Wall clock time and date at job start Wed Apr 1 2020 00:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47230 * 2 1 4 4 C 1.34776 * 119.99924 * 270.68983 * 3 2 1 5 5 O 1.21628 * 119.99927 * 185.49419 * 4 3 2 6 6 C 1.47281 * 120.00116 * 5.50118 * 4 3 2 7 7 C 1.37959 * 126.80915 * 7.27612 * 6 4 3 8 8 N 1.34158 * 107.88949 * 179.97438 * 7 6 4 9 9 H 0.96996 * 125.16239 * 180.02562 * 8 7 6 10 10 N 1.39763 * 109.67207 * 0.02562 * 8 7 6 11 11 C 1.31358 * 109.08366 * 359.74442 * 10 8 7 12 12 C 1.48295 * 126.51777 * 180.26322 * 11 10 8 13 13 C 1.39811 * 120.54187 * 325.14480 * 12 11 10 14 14 C 1.38396 * 118.30995 * 180.02562 * 13 12 11 15 15 C 1.38327 * 119.28912 * 359.97438 * 14 13 12 16 16 N 1.31892 * 121.03634 * 0.02562 * 15 14 13 17 17 C 1.31740 * 121.85438 * 359.65244 * 16 15 14 18 18 C 1.46505 * 120.00132 * 90.96995 * 3 2 1 19 19 C 1.53942 * 113.74018 * 222.68046 * 18 3 2 20 20 N 1.47820 * 86.03550 * 222.08156 * 19 18 3 21 21 C 1.36936 * 134.45768 * 204.64390 * 20 19 18 22 22 H 1.08007 * 119.99734 * 179.86725 * 21 20 19 23 23 C 1.38808 * 120.00330 * 359.87141 * 21 20 19 24 24 N 1.31624 * 119.99650 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00336 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47290 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47019 * 119.99864 * 25 23 21 28 28 H 1.48497 * 109.47289 * 239.99563 * 25 23 21 29 29 C 1.47579 * 91.04909 * 24.55013 * 20 19 18 30 30 H 1.08996 * 109.47108 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47038 * 300.00382 * 1 2 3 32 32 H 1.09000 * 109.46728 * 60.00043 * 1 2 3 33 33 H 1.09002 * 109.47038 * 239.99617 * 2 1 3 34 34 H 1.09000 * 109.46728 * 119.99957 * 2 1 3 35 35 H 1.08005 * 126.05707 * 0.02562 * 7 6 4 36 36 H 1.08001 * 120.84055 * 359.97438 * 13 12 11 37 37 H 1.08002 * 120.35672 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.48214 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.70388 * 180.33512 * 17 16 15 40 40 H 1.09004 * 112.93994 * 354.27242 * 18 3 2 41 41 H 1.08995 * 113.77167 * 336.34338 * 19 18 3 42 42 H 1.09001 * 113.77019 * 107.74704 * 19 18 3 43 43 H 0.97004 * 119.99868 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.77275 * 221.15337 * 29 20 19 45 45 H 1.08998 * 113.77306 * 89.75407 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2298 2.0211 -1.1671 5 8 2.7289 3.1303 -1.1708 6 6 1.8563 1.3775 -2.4381 7 6 1.1605 0.1964 -2.5934 8 7 1.0296 -0.0350 -3.9084 9 1 0.5795 -0.8004 -4.2988 10 7 1.6403 0.9942 -4.6303 11 6 2.1456 1.8675 -3.7892 12 6 2.8728 3.1115 -4.1396 13 6 3.7014 3.1572 -5.2648 14 6 4.3584 4.3418 -5.5484 15 6 4.1757 5.4327 -4.7177 16 7 3.3874 5.3596 -3.6628 17 6 2.7366 4.2559 -3.3563 18 6 2.2828 2.0646 1.2686 19 6 1.7850 3.5209 1.3035 20 7 3.0625 3.8334 1.9783 21 6 3.4821 4.8233 2.8264 22 1 4.4983 4.8260 3.1923 23 6 2.6015 5.8232 3.2158 24 7 1.3633 5.8200 2.7694 25 14 3.1737 7.1730 4.3732 26 1 4.5987 6.9508 4.7268 27 1 3.0297 8.4916 3.7053 28 1 2.3476 7.1503 5.6069 29 6 3.7030 2.6495 1.3732 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7865 -0.4305 -1.7973 36 1 3.8261 2.2899 -5.8961 37 1 5.0062 4.4140 -6.4095 38 1 4.6866 6.3587 -4.9363 39 1 2.0958 4.2364 -2.4871 40 1 1.9847 1.4779 2.1375 41 1 1.6863 3.9752 0.3176 42 1 0.9069 3.6701 1.9319 43 1 0.7477 6.5185 3.0418 44 1 4.3534 2.1042 2.0571 45 1 4.1689 2.8472 0.4079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000956960605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:33 Heat of formation + Delta-G solvation = 151.723561 kcal Electronic energy + Delta-G solvation = -30309.024657 eV Core-core repulsion = 26330.984291 eV Total energy + Delta-G solvation = -3978.040366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.50816 -40.99969 -40.75241 -38.38380 -36.93451 -34.41592 -34.20366 -32.87037 -31.87018 -31.09619 -30.87510 -29.14986 -26.50958 -25.65597 -25.07952 -24.56352 -24.44122 -23.00429 -22.16676 -21.15921 -20.12216 -18.80053 -18.70064 -17.94104 -17.58034 -17.13595 -16.99405 -16.73826 -16.37015 -16.17796 -15.68038 -15.55419 -15.43151 -15.16629 -14.71038 -14.36078 -14.30603 -14.07745 -13.84406 -13.66003 -13.37990 -13.27003 -12.95605 -12.85013 -12.75527 -12.57260 -12.41152 -12.19486 -11.98976 -11.89709 -11.68338 -11.42580 -11.39911 -10.97198 -10.65347 -10.37136 -10.34132 -9.91386 -9.55386 -9.34436 -8.81799 -7.87109 -5.19246 -0.18584 0.37908 0.52651 1.19312 1.42952 1.46663 1.56093 1.69457 2.11072 2.41765 2.51828 2.93200 3.18836 3.32701 3.53390 3.57317 3.74966 3.89740 3.92597 3.96754 4.02730 4.07647 4.12303 4.24760 4.36993 4.40792 4.41842 4.59776 4.65222 4.66552 4.88540 4.93707 4.95855 4.99661 5.03578 5.11564 5.22339 5.25670 5.29324 5.39717 5.49448 5.56089 5.80097 5.95283 5.99924 6.21025 6.40282 6.65936 6.95358 7.11980 7.45438 7.63950 8.62410 9.30438 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.004206 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.092375 B = 6656.248021 C = 8823.734050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.076 3.924 3 N -0.595 5.595 4 C 0.574 3.426 5 O -0.557 6.557 6 C -0.306 4.306 7 C 0.118 3.882 8 N -0.442 5.442 9 H 0.464 0.536 10 N -0.294 5.294 11 C 0.157 3.843 12 C -0.096 4.096 13 C -0.049 4.049 14 C -0.174 4.174 15 C 0.093 3.907 16 N -0.530 5.530 17 C 0.141 3.859 18 C 0.133 3.867 19 C 0.158 3.842 20 N -0.632 5.632 21 C -0.231 4.231 22 H 0.080 0.920 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.979 3.021 26 H -0.265 1.265 27 H -0.297 1.297 28 H -0.284 1.284 29 C 0.112 3.888 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.159 0.841 37 H 0.179 0.821 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.024 0.976 42 H 0.034 0.966 43 H 0.247 0.753 44 H 0.054 0.946 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 -20.971 -16.635 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.045 4.045 3 N -0.326 5.326 4 C 0.365 3.635 5 O -0.437 6.437 6 C -0.321 4.321 7 C -0.033 4.033 8 N -0.150 5.150 9 H 0.314 0.686 10 N -0.116 5.116 11 C -0.012 4.012 12 C -0.100 4.100 13 C -0.076 4.076 14 C -0.193 4.193 15 C -0.064 4.064 16 N -0.239 5.239 17 C -0.016 4.016 18 C 0.028 3.972 19 C 0.032 3.968 20 N -0.358 5.358 21 C -0.360 4.360 22 H 0.098 0.902 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.224 1.224 28 H -0.211 1.211 29 C -0.014 4.014 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.268 0.732 36 H 0.176 0.824 37 H 0.196 0.804 38 H 0.196 0.804 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.595 -19.759 -17.127 26.197 hybrid contribution 0.146 0.660 0.922 1.143 sum -1.450 -19.099 -16.205 25.089 Atomic orbital electron populations 1.22503 0.94739 1.04642 1.02779 1.22481 0.95337 0.80939 1.05786 1.47863 1.65446 1.15117 1.04215 1.17689 0.77796 0.84667 0.83300 1.90797 1.45091 1.21173 1.86650 1.21278 1.16843 1.01570 0.92403 1.24929 0.94150 0.95702 0.88516 1.46062 1.43831 1.20942 1.04150 0.68634 1.77207 1.16162 0.99320 1.18878 1.21547 0.96200 0.93289 0.90155 1.18830 1.00994 0.91761 0.98391 1.21913 0.92421 0.99426 0.93802 1.22409 1.01754 0.92648 1.02473 1.23497 0.93449 1.00216 0.89260 1.67790 1.09073 1.28471 1.18594 1.23387 0.95053 0.87242 0.95948 1.23332 0.95410 0.92557 0.85854 1.22481 0.89712 0.90462 0.94163 1.46105 1.10660 1.28257 1.50810 1.19433 0.96320 1.02479 1.17777 0.90235 1.25632 0.96256 1.01232 1.02946 1.70053 1.05313 1.35498 1.49328 0.85001 0.77963 0.78401 0.77924 1.18934 1.22450 1.21096 1.23000 0.95610 0.87237 0.95598 0.86893 0.92900 0.92326 0.87275 0.87745 0.73169 0.82374 0.80411 0.80365 0.83384 0.85221 0.95862 0.94753 0.94446 0.92837 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 8.81 71.98 0.63 -1.64 16 2 C 0.08 1.15 5.59 86.38 0.48 1.63 16 3 N -0.59 -17.49 2.73 -807.52 -2.21 -19.70 16 4 C 0.57 20.10 7.05 86.62 0.61 20.71 16 5 O -0.56 -25.58 7.95 -4.12 -0.03 -25.62 16 6 C -0.31 -8.28 6.10 -18.78 -0.11 -8.39 16 7 C 0.12 1.75 8.61 84.27 0.73 2.47 16 8 N -0.44 -5.89 7.20 -56.43 -0.41 -6.29 16 9 H 0.46 1.82 8.96 -213.54 -1.91 -0.10 16 10 N -0.29 -6.76 12.64 -44.53 -0.56 -7.33 16 11 C 0.16 4.55 6.96 44.08 0.31 4.85 16 12 C -0.10 -3.10 5.78 -19.95 -0.12 -3.22 16 13 C -0.05 -1.23 9.92 22.69 0.23 -1.00 16 14 C -0.17 -3.88 10.10 22.33 0.23 -3.65 16 15 C 0.09 2.65 11.17 84.70 0.95 3.60 16 16 N -0.53 -20.94 10.35 -194.91 -2.02 -22.96 16 17 C 0.14 5.65 9.04 84.97 0.77 6.42 16 18 C 0.13 5.10 4.58 46.75 0.21 5.31 16 19 C 0.16 8.34 6.79 86.44 0.59 8.92 16 20 N -0.63 -35.98 3.70 -716.67 -2.65 -38.63 16 21 C -0.23 -14.23 10.70 84.03 0.90 -13.33 16 22 H 0.08 4.70 7.83 -2.91 -0.02 4.67 16 23 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 24 N -0.95 -62.00 11.39 21.65 0.25 -61.75 16 25 Si 0.98 49.21 29.55 68.60 2.03 51.23 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 28 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 29 C 0.11 5.11 8.27 86.49 0.72 5.83 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.79 6.28 -2.39 -0.01 0.78 16 33 H 0.11 1.07 4.79 -2.39 -0.01 1.06 16 34 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 35 H 0.25 1.61 3.21 -2.91 -0.01 1.60 16 36 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.15 6.94 5.43 -2.91 -0.02 6.93 16 40 H 0.13 4.29 8.03 -2.38 -0.02 4.27 16 41 H 0.02 1.39 5.73 -2.39 -0.01 1.38 16 42 H 0.03 1.98 7.17 -2.39 -0.02 1.97 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.05 2.21 8.14 -2.38 -0.02 2.20 16 45 H 0.03 1.64 6.28 -2.39 -0.02 1.63 16 Total: -1.00 -93.94 360.45 1.12 -92.82 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.85 Total: 13.43 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.58 Total: 24.80 kcal Atomic # 7 Polarization: -149.07 SS G_CDS: -7.60 Total: -156.67 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.03 Total: -25.62 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.23 kcal Total: -93.94 1.12 -92.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000956960605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.539 kcal (2) G-P(sol) polarization free energy of solvation -93.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds