Wall clock time and date at job start Wed Apr 1 2020 00:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47280 * 2 1 4 4 C 1.34774 * 120.00113 * 84.92614 * 3 2 1 5 5 O 1.21609 * 120.00132 * 184.25050 * 4 3 2 6 6 C 1.47419 * 120.00248 * 4.24556 * 4 3 2 7 7 C 1.41369 * 126.40482 * 345.09855 * 6 4 3 8 8 N 1.30457 * 108.07660 * 180.02562 * 7 6 4 9 9 N 1.39939 * 108.91062 * 359.97438 * 8 7 6 10 10 C 1.39918 * 125.77093 * 179.97438 * 9 8 7 11 11 C 1.39326 * 120.85308 * 179.74516 * 10 9 8 12 12 C 1.38013 * 119.07668 * 179.75771 * 11 10 9 13 13 N 1.31933 * 120.83349 * 0.52983 * 12 11 10 14 14 C 1.31943 * 121.88452 * 359.74074 * 13 12 11 15 15 C 1.38003 * 120.83267 * 359.97438 * 14 13 12 16 16 C 1.34596 * 108.45391 * 0.02562 * 9 8 7 17 17 C 1.46493 * 119.99847 * 264.92755 * 3 2 1 18 18 C 1.53945 * 113.74324 * 222.89781 * 17 3 2 19 19 N 1.47813 * 86.03660 * 222.08247 * 18 17 3 20 20 C 1.36942 * 134.45750 * 204.63840 * 19 18 17 21 21 H 1.07989 * 119.99989 * 184.81482 * 20 19 18 22 22 C 1.38819 * 119.99664 * 4.81802 * 20 19 18 23 23 N 1.31615 * 120.00041 * 5.07668 * 22 20 19 24 24 Si 1.86798 * 119.99657 * 185.07197 * 22 20 19 25 25 H 1.48499 * 109.46925 * 95.00068 * 24 22 20 26 26 H 1.48497 * 109.47207 * 214.99764 * 24 22 20 27 27 H 1.48500 * 109.47444 * 335.00159 * 24 22 20 28 28 C 1.47582 * 91.05203 * 24.54658 * 19 18 17 29 29 H 1.08998 * 109.47140 * 300.00757 * 1 2 3 30 30 H 1.08999 * 109.47031 * 60.00040 * 1 2 3 31 31 H 1.08993 * 109.47161 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47477 * 239.99627 * 2 1 3 33 33 H 1.09007 * 109.47245 * 119.99347 * 2 1 3 34 34 H 1.07997 * 125.96394 * 0.02562 * 7 6 4 35 35 H 1.07997 * 120.46133 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.58185 * 180.25007 * 12 11 10 37 37 H 1.08003 * 119.58107 * 179.97438 * 14 13 12 38 38 H 1.08005 * 120.45849 * 180.02562 * 15 14 13 39 39 H 1.08002 * 126.31936 * 180.02562 * 16 9 8 40 40 H 1.09000 * 112.94563 * 354.48443 * 17 3 2 41 41 H 1.09003 * 113.76770 * 336.34402 * 18 17 3 42 42 H 1.09001 * 113.77381 * 107.74605 * 18 17 3 43 43 H 0.97000 * 119.99887 * 179.97438 * 23 22 20 44 44 H 1.08995 * 113.76678 * 221.14937 * 28 19 18 45 45 H 1.09001 * 113.76699 * 89.75484 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1457 2.0510 1.1626 5 8 2.4768 3.2211 1.1571 6 6 1.8835 1.3652 2.4409 7 6 1.2201 0.1281 2.6088 8 7 1.1847 -0.1424 3.8845 9 7 1.8146 0.8923 4.5852 10 6 1.9747 0.9609 5.9735 11 6 2.6260 2.0411 6.5651 12 6 2.7590 2.0738 7.9384 13 7 2.2880 1.0947 8.6869 14 6 1.6703 0.0528 8.1638 15 6 1.4918 -0.0520 6.7994 16 6 2.2394 1.8108 3.6978 17 6 2.3683 2.0344 -1.2637 18 6 3.6721 2.8503 -1.1995 19 7 2.9497 3.8737 -1.9842 20 6 3.3319 4.8770 -2.8343 21 1 2.5938 5.5562 -3.2343 22 6 4.6682 5.0209 -3.1817 23 7 5.5529 4.1351 -2.7754 24 14 5.2107 6.4716 -4.2259 25 1 5.6894 7.5655 -3.3429 26 1 6.3104 6.0476 -5.1292 27 1 4.0637 6.9552 -5.0356 28 6 1.6518 3.3787 -1.4859 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.8137 -0.4859 1.8188 35 1 3.0183 2.8434 5.9578 36 1 3.2589 2.9093 8.4060 37 1 1.2997 -0.7280 8.8116 38 1 0.9850 -0.9074 6.3776 39 1 2.7629 2.7273 3.9268 40 1 2.3136 1.3613 -2.1193 41 1 3.9381 3.1750 -0.1935 42 1 4.5042 2.3918 -1.7338 43 1 6.4865 4.2354 -3.0185 44 1 0.8738 3.3413 -2.2484 45 1 1.3230 3.8589 -0.5642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957046803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:59 Heat of formation + Delta-G solvation = 184.953914 kcal Electronic energy + Delta-G solvation = -29108.618061 eV Core-core repulsion = 25132.018671 eV Total energy + Delta-G solvation = -3976.599390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15652 -40.45222 -39.64554 -36.77627 -35.87356 -34.49988 -32.11306 -31.94780 -30.86769 -30.28145 -30.13502 -27.33770 -25.17526 -24.62789 -24.27151 -23.53527 -23.25212 -21.72328 -21.51587 -19.98250 -19.31104 -17.94153 -16.98922 -16.67275 -16.36941 -16.29744 -15.97048 -15.75965 -15.32232 -14.94556 -14.66199 -14.57954 -14.22178 -14.06423 -13.92600 -13.69384 -13.49651 -12.91021 -12.47645 -12.39619 -12.37872 -12.22359 -11.65287 -11.60965 -11.36609 -11.30133 -11.21707 -10.99167 -10.80654 -10.55457 -10.09239 -10.05362 -9.90008 -9.73364 -9.61437 -9.47408 -9.31165 -8.76301 -8.59961 -8.06853 -6.70441 -5.66044 -2.98025 0.21869 0.59708 1.65541 1.78725 1.97421 3.21654 3.33873 3.45059 3.49945 3.51591 3.54563 3.91382 3.97628 4.22207 4.43613 4.50095 4.56192 4.64381 4.72932 4.84411 4.97503 5.03121 5.10063 5.18619 5.28274 5.29811 5.33233 5.38244 5.56220 5.58672 5.66212 5.72257 5.73484 5.90771 6.02497 6.08190 6.13606 6.41313 6.55801 6.66398 6.67696 6.99585 7.12892 7.40242 7.46971 7.65998 7.66699 7.81698 8.09140 8.59901 9.14370 9.80959 10.72541 11.49832 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.002519 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.388940 B =11112.641326 C =12432.557387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.084 3.916 3 N -0.594 5.594 4 C 0.585 3.415 5 O -0.515 6.515 6 C -0.261 4.261 7 C 0.069 3.931 8 N -0.292 5.292 9 N -0.323 5.323 10 C 0.207 3.793 11 C -0.196 4.196 12 C 0.129 3.871 13 N -0.494 5.494 14 C 0.123 3.877 15 C -0.174 4.174 16 C 0.123 3.877 17 C 0.093 3.907 18 C 0.148 3.852 19 N -0.604 5.604 20 C -0.214 4.214 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.113 3.887 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.223 0.777 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.150 0.850 39 H 0.194 0.806 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.252 0.748 44 H 0.035 0.965 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 -13.455 18.219 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.040 4.040 3 N -0.327 5.327 4 C 0.372 3.628 5 O -0.392 6.392 6 C -0.275 4.275 7 C -0.119 4.119 8 N -0.109 5.109 9 N -0.096 5.096 10 C 0.106 3.894 11 C -0.219 4.219 12 C -0.028 4.028 13 N -0.204 5.204 14 C -0.034 4.034 15 C -0.196 4.196 16 C -0.022 4.022 17 C -0.010 4.010 18 C 0.022 3.978 19 N -0.330 5.330 20 C -0.342 4.342 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.238 0.762 35 H 0.164 0.836 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.168 0.832 39 H 0.210 0.790 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.729 -13.412 19.837 25.846 hybrid contribution 0.459 1.305 -2.172 2.575 sum -9.270 -12.108 17.664 23.336 Atomic orbital electron populations 1.22451 0.96150 1.02317 1.03534 1.22094 0.94170 0.84043 1.03713 1.47886 1.64904 1.13182 1.06721 1.17089 0.77819 0.85831 0.82063 1.90869 1.46330 1.15238 1.86716 1.20615 1.13181 0.99304 0.94366 1.25615 0.96562 0.95584 0.94177 1.77267 1.18413 1.09460 1.05790 1.45591 1.43295 1.16675 1.04040 1.17838 0.96467 0.95737 0.79374 1.21999 1.03331 0.99030 0.97499 1.22702 0.94536 0.96440 0.89103 1.67725 1.10096 1.01880 1.40686 1.22760 0.93319 0.95331 0.91948 1.21950 1.03223 0.99954 0.94438 1.23067 0.96277 0.94798 0.88061 1.24103 1.00428 0.93187 0.83295 1.22843 0.92669 0.86617 0.95682 1.45616 1.00926 1.37176 1.49287 1.18990 0.92452 1.04872 1.17852 0.90422 1.24765 0.95838 0.99027 1.01046 1.69828 1.01640 1.35371 1.49843 0.86108 0.78110 0.82069 0.79552 1.21758 1.21783 1.20623 1.22947 0.90612 0.91116 0.96775 0.91920 0.91140 0.91283 0.89708 0.89713 0.76160 0.83597 0.81513 0.81721 0.83188 0.78956 0.87732 0.93062 0.90778 0.93837 0.94647 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.78 37.16 0.33 -1.26 16 2 C 0.08 0.86 5.65 -4.04 -0.02 0.84 16 3 N -0.59 -9.16 2.74 -169.17 -0.46 -9.62 16 4 C 0.58 9.87 7.05 -12.52 -0.09 9.78 16 5 O -0.52 -10.98 12.64 5.27 0.07 -10.91 16 6 C -0.26 -3.50 5.92 -105.05 -0.62 -4.13 16 7 C 0.07 0.76 8.66 -16.95 -0.15 0.61 16 8 N -0.29 -3.42 11.87 30.88 0.37 -3.05 16 9 N -0.32 -3.69 3.76 -10.03 -0.04 -3.73 16 10 C 0.21 2.04 6.73 -83.36 -0.56 1.48 16 11 C -0.20 -1.60 9.52 -39.26 -0.37 -1.97 16 12 C 0.13 0.98 11.17 -17.59 -0.20 0.78 16 13 N -0.49 -4.40 10.36 -13.32 -0.14 -4.54 16 14 C 0.12 0.93 11.17 -17.59 -0.20 0.74 16 15 C -0.17 -1.48 9.73 -39.26 -0.38 -1.86 16 16 C 0.12 1.49 10.67 -16.42 -0.18 1.32 16 17 C 0.09 1.79 4.60 -70.15 -0.32 1.47 16 18 C 0.15 3.68 6.99 -2.84 -0.02 3.66 16 19 N -0.60 -16.39 3.70 -177.88 -0.66 -17.05 16 20 C -0.21 -6.27 10.70 -15.05 -0.16 -6.43 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.92 -28.09 11.29 55.49 0.63 -27.46 16 24 Si 0.91 22.84 29.56 -169.99 -5.02 17.82 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.11 2.49 8.27 -2.97 -0.02 2.46 16 29 H 0.06 0.57 6.50 -51.93 -0.34 0.24 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 33 H 0.09 0.76 4.59 -51.93 -0.24 0.52 16 34 H 0.22 1.84 3.40 -52.49 -0.18 1.66 16 35 H 0.15 0.95 6.85 -52.49 -0.36 0.59 16 36 H 0.17 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.15 1.18 7.78 -52.48 -0.41 0.77 16 39 H 0.19 1.99 7.09 -52.49 -0.37 1.62 16 40 H 0.10 1.85 7.91 -51.93 -0.41 1.44 16 41 H 0.05 1.38 5.69 -51.93 -0.30 1.09 16 42 H 0.07 2.02 6.87 -51.93 -0.36 1.66 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 1.17 6.32 -51.93 -0.33 0.84 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -37.04 365.90 -8.16 -45.20 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.35 Total: 0.74 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.06 Total: 7.09 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.30 Total: -65.45 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.04 -8.16 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957046803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.158 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds