Wall clock time and date at job start Wed Apr 1 2020 00:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47280 * 2 1 4 4 C 1.34774 * 120.00113 * 84.92614 * 3 2 1 5 5 O 1.21609 * 120.00132 * 184.25050 * 4 3 2 6 6 C 1.47419 * 120.00248 * 4.24556 * 4 3 2 7 7 C 1.41369 * 126.40482 * 345.09855 * 6 4 3 8 8 N 1.30457 * 108.07660 * 180.02562 * 7 6 4 9 9 N 1.39939 * 108.91062 * 359.97438 * 8 7 6 10 10 C 1.39918 * 125.77093 * 179.97438 * 9 8 7 11 11 C 1.39326 * 120.85308 * 179.74516 * 10 9 8 12 12 C 1.38013 * 119.07668 * 179.75771 * 11 10 9 13 13 N 1.31933 * 120.83349 * 0.52983 * 12 11 10 14 14 C 1.31943 * 121.88452 * 359.74074 * 13 12 11 15 15 C 1.38003 * 120.83267 * 359.97438 * 14 13 12 16 16 C 1.34596 * 108.45391 * 0.02562 * 9 8 7 17 17 C 1.46493 * 119.99847 * 264.92755 * 3 2 1 18 18 C 1.53945 * 113.74324 * 222.89781 * 17 3 2 19 19 N 1.47813 * 86.03660 * 222.08247 * 18 17 3 20 20 C 1.36942 * 134.45750 * 204.63840 * 19 18 17 21 21 H 1.07989 * 119.99989 * 184.81482 * 20 19 18 22 22 C 1.38819 * 119.99664 * 4.81802 * 20 19 18 23 23 N 1.31615 * 120.00041 * 5.07668 * 22 20 19 24 24 Si 1.86798 * 119.99657 * 185.07197 * 22 20 19 25 25 H 1.48499 * 109.46925 * 95.00068 * 24 22 20 26 26 H 1.48497 * 109.47207 * 214.99764 * 24 22 20 27 27 H 1.48500 * 109.47444 * 335.00159 * 24 22 20 28 28 C 1.47582 * 91.05203 * 24.54658 * 19 18 17 29 29 H 1.08998 * 109.47140 * 300.00757 * 1 2 3 30 30 H 1.08999 * 109.47031 * 60.00040 * 1 2 3 31 31 H 1.08993 * 109.47161 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47477 * 239.99627 * 2 1 3 33 33 H 1.09007 * 109.47245 * 119.99347 * 2 1 3 34 34 H 1.07997 * 125.96394 * 0.02562 * 7 6 4 35 35 H 1.07997 * 120.46133 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.58185 * 180.25007 * 12 11 10 37 37 H 1.08003 * 119.58107 * 179.97438 * 14 13 12 38 38 H 1.08005 * 120.45849 * 180.02562 * 15 14 13 39 39 H 1.08002 * 126.31936 * 180.02562 * 16 9 8 40 40 H 1.09000 * 112.94563 * 354.48443 * 17 3 2 41 41 H 1.09003 * 113.76770 * 336.34402 * 18 17 3 42 42 H 1.09001 * 113.77381 * 107.74605 * 18 17 3 43 43 H 0.97000 * 119.99887 * 179.97438 * 23 22 20 44 44 H 1.08995 * 113.76678 * 221.14937 * 28 19 18 45 45 H 1.09001 * 113.76699 * 89.75484 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1457 2.0510 1.1626 5 8 2.4768 3.2211 1.1571 6 6 1.8835 1.3652 2.4409 7 6 1.2201 0.1281 2.6088 8 7 1.1847 -0.1424 3.8845 9 7 1.8146 0.8923 4.5852 10 6 1.9747 0.9609 5.9735 11 6 2.6260 2.0411 6.5651 12 6 2.7590 2.0738 7.9384 13 7 2.2880 1.0947 8.6869 14 6 1.6703 0.0528 8.1638 15 6 1.4918 -0.0520 6.7994 16 6 2.2394 1.8108 3.6978 17 6 2.3683 2.0344 -1.2637 18 6 3.6721 2.8503 -1.1995 19 7 2.9497 3.8737 -1.9842 20 6 3.3319 4.8770 -2.8343 21 1 2.5938 5.5562 -3.2343 22 6 4.6682 5.0209 -3.1817 23 7 5.5529 4.1351 -2.7754 24 14 5.2107 6.4716 -4.2259 25 1 5.6894 7.5655 -3.3429 26 1 6.3104 6.0476 -5.1292 27 1 4.0637 6.9552 -5.0356 28 6 1.6518 3.3787 -1.4859 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.8137 -0.4859 1.8188 35 1 3.0183 2.8434 5.9578 36 1 3.2589 2.9093 8.4060 37 1 1.2997 -0.7280 8.8116 38 1 0.9850 -0.9074 6.3776 39 1 2.7629 2.7273 3.9268 40 1 2.3136 1.3613 -2.1193 41 1 3.9381 3.1750 -0.1935 42 1 4.5042 2.3918 -1.7338 43 1 6.4865 4.2354 -3.0185 44 1 0.8738 3.3413 -2.2484 45 1 1.3230 3.8589 -0.5642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957046803.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:58 Heat of formation + Delta-G solvation = 160.005782 kcal Electronic energy + Delta-G solvation = -29109.699893 eV Core-core repulsion = 25132.018671 eV Total energy + Delta-G solvation = -3977.681222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05996 -41.40994 -40.76646 -38.46711 -37.02191 -35.37833 -34.14868 -32.60528 -31.80856 -31.42120 -31.00166 -29.21844 -26.52880 -26.33447 -24.97412 -24.78928 -24.34803 -22.76620 -22.46082 -21.43778 -20.40206 -19.02329 -18.75445 -17.86366 -17.43733 -17.07098 -16.91858 -16.79363 -16.59628 -16.40803 -16.00230 -15.70833 -15.49991 -15.10772 -14.82254 -14.80000 -14.40654 -14.29587 -14.10558 -13.70358 -13.42793 -13.21273 -12.97337 -12.92816 -12.81426 -12.69437 -12.52497 -12.27592 -12.20551 -11.98897 -11.84865 -11.65454 -11.46411 -11.00065 -10.72148 -10.55126 -10.49275 -10.32406 -9.68576 -9.43521 -8.84393 -7.87724 -5.22478 -0.55669 0.00418 0.72052 0.95329 1.07832 1.43634 1.47135 1.55779 1.98757 2.32742 2.50172 2.72203 3.11991 3.29437 3.43380 3.47853 3.53985 3.69242 3.73435 3.80624 3.89186 3.99715 4.06904 4.15674 4.27224 4.38756 4.39166 4.42083 4.60604 4.62933 4.66329 4.75543 4.85604 4.87247 4.93921 5.00986 5.06860 5.22628 5.28216 5.33471 5.42305 5.46160 5.53484 5.74833 5.92166 5.96492 6.24166 6.55348 6.86623 6.92788 7.30608 7.61635 8.59809 9.27797 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.002519 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.388940 B =11112.641326 C =12432.557387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 N -0.592 5.592 4 C 0.582 3.418 5 O -0.571 6.571 6 C -0.283 4.283 7 C 0.083 3.917 8 N -0.301 5.301 9 N -0.319 5.319 10 C 0.178 3.822 11 C -0.197 4.197 12 C 0.128 3.872 13 N -0.512 5.512 14 C 0.125 3.875 15 C -0.175 4.175 16 C 0.125 3.875 17 C 0.130 3.870 18 C 0.145 3.855 19 N -0.633 5.633 20 C -0.232 4.232 21 H 0.080 0.920 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.981 3.019 25 H -0.292 1.292 26 H -0.289 1.289 27 H -0.265 1.265 28 C 0.114 3.886 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.248 0.752 35 H 0.158 0.842 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.156 0.844 39 H 0.202 0.798 40 H 0.129 0.871 41 H 0.026 0.974 42 H 0.044 0.956 43 H 0.248 0.752 44 H 0.055 0.945 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 -15.064 18.940 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.045 4.045 3 N -0.323 5.323 4 C 0.372 3.628 5 O -0.451 6.451 6 C -0.297 4.297 7 C -0.105 4.105 8 N -0.117 5.117 9 N -0.092 5.092 10 C 0.078 3.922 11 C -0.220 4.220 12 C -0.029 4.029 13 N -0.221 5.221 14 C -0.032 4.032 15 C -0.196 4.196 16 C -0.022 4.022 17 C 0.026 3.974 18 C 0.019 3.981 19 N -0.360 5.360 20 C -0.361 4.361 21 H 0.098 0.902 22 C -0.262 4.262 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.220 1.220 26 H -0.216 1.216 27 H -0.189 1.189 28 C -0.012 4.012 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.263 0.737 35 H 0.175 0.825 36 H 0.210 0.790 37 H 0.211 0.789 38 H 0.173 0.827 39 H 0.219 0.781 40 H 0.147 0.853 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.225 -15.087 20.596 27.890 hybrid contribution 0.878 1.779 -2.220 2.977 sum -10.347 -13.308 18.376 24.937 Atomic orbital electron populations 1.22418 0.94286 1.04471 1.02757 1.22485 0.95610 0.80925 1.05517 1.47847 1.64501 1.15041 1.04925 1.17564 0.76594 0.85292 0.83355 1.90838 1.48943 1.17776 1.87586 1.20319 1.15585 1.00706 0.93058 1.25912 0.95522 0.94566 0.94498 1.77244 1.18786 1.09787 1.05930 1.45690 1.42661 1.16216 1.04606 1.18209 0.98082 0.97115 0.78778 1.22216 1.02853 0.98906 0.97980 1.23148 0.94033 0.96843 0.88875 1.67794 1.10552 1.02517 1.41277 1.23220 0.92470 0.95554 0.91930 1.22093 1.03030 0.99761 0.94760 1.23263 0.95672 0.95117 0.88111 1.23411 0.95615 0.92695 0.85714 1.22663 0.94380 0.87597 0.93480 1.46037 1.03407 1.37271 1.49281 1.19397 0.92958 1.05645 1.18096 0.90186 1.25668 0.95894 1.01849 1.02808 1.70033 1.01559 1.37079 1.51288 0.85021 0.77881 0.78386 0.77819 1.21962 1.21570 1.18894 1.22992 0.89559 0.92305 0.96331 0.92570 0.92102 0.87595 0.87922 0.87961 0.73650 0.82477 0.79004 0.78908 0.82666 0.78090 0.85294 0.95676 0.93757 0.94327 0.92722 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.78 71.98 0.63 -1.87 16 2 C 0.08 1.36 5.65 86.38 0.49 1.85 16 3 N -0.59 -17.83 2.74 -807.39 -2.21 -20.05 16 4 C 0.58 19.95 7.05 86.66 0.61 20.56 16 5 O -0.57 -25.55 12.64 -4.06 -0.05 -25.60 16 6 C -0.28 -7.47 5.92 -20.14 -0.12 -7.59 16 7 C 0.08 1.66 8.66 85.67 0.74 2.41 16 8 N -0.30 -6.51 11.87 -56.22 -0.67 -7.18 16 9 N -0.32 -7.00 3.76 -185.65 -0.70 -7.69 16 10 C 0.18 3.33 6.73 38.37 0.26 3.59 16 11 C -0.20 -3.01 9.52 22.48 0.21 -2.79 16 12 C 0.13 1.74 11.17 84.62 0.95 2.69 16 13 N -0.51 -8.21 10.36 -196.05 -2.03 -10.24 16 14 C 0.12 1.65 11.17 84.62 0.95 2.59 16 15 C -0.17 -2.72 9.73 22.48 0.22 -2.50 16 16 C 0.13 3.02 10.67 84.22 0.90 3.92 16 17 C 0.13 4.99 4.60 46.75 0.21 5.21 16 18 C 0.14 7.53 6.99 86.44 0.60 8.14 16 19 N -0.63 -35.36 3.70 -716.68 -2.65 -38.01 16 20 C -0.23 -13.93 10.70 84.03 0.90 -13.03 16 21 H 0.08 4.60 7.83 -2.92 -0.02 4.57 16 22 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 23 N -0.95 -60.01 11.29 21.65 0.24 -59.76 16 24 Si 0.98 47.78 29.56 68.60 2.03 49.81 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.11 5.10 8.27 86.49 0.72 5.82 16 29 H 0.06 0.88 6.50 -2.39 -0.02 0.86 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 1.54 7.88 -2.39 -0.02 1.52 16 33 H 0.10 1.52 4.59 -2.38 -0.01 1.51 16 34 H 0.25 3.31 3.40 -2.91 -0.01 3.30 16 35 H 0.16 1.93 6.85 -2.91 -0.02 1.91 16 36 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.16 2.19 7.78 -2.91 -0.02 2.16 16 39 H 0.20 4.28 7.09 -2.91 -0.02 4.26 16 40 H 0.13 4.35 7.91 -2.39 -0.02 4.33 16 41 H 0.03 1.45 5.69 -2.39 -0.01 1.44 16 42 H 0.04 2.53 6.87 -2.39 -0.02 2.52 16 43 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.74 6.32 -2.39 -0.02 1.73 16 Total: -1.00 -84.21 365.90 3.73 -80.48 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.04 Total: 12.96 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 8.73 Total: 25.29 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -8.02 Total: -142.94 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -84.21 3.73 -80.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957046803.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.486 kcal (2) G-P(sol) polarization free energy of solvation -84.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds