Wall clock time and date at job start Wed Apr 1 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46771 * 2 1 4 4 C 1.34768 * 120.00365 * 253.76868 * 3 2 1 5 5 O 1.21568 * 120.00565 * 181.19814 * 4 3 2 6 6 C 1.47725 * 120.00024 * 1.19827 * 4 3 2 7 7 C 1.39714 * 120.01958 * 28.54708 * 6 4 3 8 8 C 1.37670 * 119.96868 * 179.80966 * 7 6 4 9 9 C 1.39494 * 120.02492 * 0.44429 * 8 7 6 10 10 C 1.48297 * 119.97456 * 179.76691 * 9 8 7 11 11 N 1.34020 * 125.65164 * 0.02562 * 10 9 8 12 12 C 1.30644 * 109.78327 * 179.97438 * 11 10 9 13 13 N 1.34570 * 108.30469 * 0.02562 * 12 11 10 14 14 H 0.97000 * 126.73746 * 179.97438 * 13 12 11 15 15 N 1.31549 * 125.65413 * 179.71406 * 10 9 8 16 16 C 1.39504 * 120.05491 * 359.78472 * 9 8 7 17 17 C 1.37664 * 120.02098 * 0.02562 * 16 9 8 18 18 C 1.46506 * 119.99628 * 73.77368 * 3 2 1 19 19 C 1.53496 * 114.20422 * 232.87010 * 18 3 2 20 20 N 1.47067 * 87.98475 * 220.15023 * 19 18 3 21 21 C 1.36931 * 136.05455 * 207.08777 * 20 19 18 22 22 H 1.07999 * 120.00548 * 5.50272 * 21 20 19 23 23 C 1.38808 * 120.00103 * 185.50210 * 21 20 19 24 24 N 1.31616 * 120.00297 * 207.27037 * 23 21 20 25 25 Si 1.86806 * 119.99790 * 27.26704 * 23 21 20 26 26 H 1.48500 * 109.46963 * 270.00132 * 25 23 21 27 27 H 1.48501 * 109.46826 * 30.00216 * 25 23 21 28 28 H 1.48503 * 109.46786 * 150.00184 * 25 23 21 29 29 C 1.47069 * 87.88398 * 27.34105 * 20 19 18 30 30 H 1.08997 * 109.47521 * 59.99791 * 1 2 3 31 31 H 1.08998 * 109.46465 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46856 * 299.99074 * 1 2 3 33 33 H 1.09006 * 109.46969 * 240.00652 * 2 1 3 34 34 H 1.08997 * 109.47521 * 120.00209 * 2 1 3 35 35 H 1.07991 * 120.01399 * 0.02562 * 7 6 4 36 36 H 1.07995 * 119.98417 * 180.20939 * 8 7 6 37 37 H 1.07999 * 125.84475 * 179.97438 * 12 11 10 38 38 H 1.07997 * 119.98954 * 179.97438 * 16 9 8 39 39 H 1.07997 * 120.01143 * 179.97438 * 17 16 9 40 40 H 1.09001 * 113.28356 * 5.93677 * 18 3 2 41 41 H 1.09005 * 113.46820 * 105.36727 * 19 18 3 42 42 H 1.09002 * 113.52072 * 334.93858 * 19 18 3 43 43 H 0.97001 * 119.99858 * 354.97408 * 24 23 21 44 44 H 1.08997 * 113.46317 * 87.44273 * 29 20 19 45 45 H 1.08997 * 113.46167 * 217.87649 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.5505 1.9079 -1.1206 5 8 2.9755 3.0469 -1.1146 6 6 2.6173 1.1012 -2.3563 7 6 1.6709 0.1004 -2.5897 8 6 1.7318 -0.6482 -3.7435 9 6 2.7435 -0.4138 -4.6749 10 6 2.8112 -1.2243 -5.9150 11 7 1.9634 -2.2053 -6.2542 12 6 2.3102 -2.7100 -7.4083 13 7 3.4035 -2.0572 -7.8437 14 1 3.8835 -2.2170 -8.6713 15 7 3.7098 -1.0956 -6.8671 16 6 3.6919 0.5821 -4.4407 17 6 3.6306 1.3344 -3.2894 18 6 1.9281 2.1900 1.2183 19 6 1.2342 3.5453 1.0240 20 7 2.2455 4.1324 1.9159 21 6 2.3075 5.2043 2.7657 22 1 1.4239 5.7960 2.9541 23 6 3.5061 5.5304 3.3852 24 7 3.4996 6.1524 4.5451 25 14 5.1285 5.0865 2.5726 26 1 5.5522 3.7350 3.0189 27 1 4.9605 5.0905 1.0971 28 1 6.1625 6.0811 2.9558 29 6 3.1629 3.0654 1.4884 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.8898 -0.0836 -1.8670 36 1 0.9984 -1.4196 -3.9258 37 1 1.8062 -3.5139 -7.9241 38 1 4.4749 0.7623 -5.1623 39 1 4.3651 2.1051 -3.1080 40 1 1.5768 1.6279 2.0836 41 1 0.2239 3.5781 1.4321 42 1 1.2878 3.9189 0.0014 43 1 2.6607 6.4478 4.9323 44 1 3.7257 3.3118 0.5881 45 1 3.7959 2.6895 2.2922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957089784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:37 Heat of formation + Delta-G solvation = 186.830965 kcal Electronic energy + Delta-G solvation = -29067.571546 eV Core-core repulsion = 25091.053551 eV Total energy + Delta-G solvation = -3976.517995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51429 -40.83727 -38.95741 -37.06092 -35.93276 -33.53371 -32.45351 -32.12191 -31.27546 -30.41733 -30.32507 -27.61160 -25.14841 -24.90970 -23.84777 -23.31121 -22.73437 -22.21476 -20.93039 -20.10612 -19.09293 -18.91006 -17.44433 -17.01007 -16.77145 -15.97049 -15.93656 -15.61611 -15.31533 -15.04421 -14.73341 -14.46645 -14.21348 -13.78689 -13.50733 -13.31516 -13.19062 -12.94589 -12.84870 -12.63231 -12.44206 -12.11627 -11.88788 -11.59680 -11.46666 -11.28059 -11.07152 -11.03809 -10.74278 -10.54949 -10.54403 -10.42381 -10.03045 -9.70283 -9.44643 -9.18463 -9.13705 -8.76769 -8.32237 -8.23539 -7.00435 -6.23545 -3.04326 0.29607 1.15475 1.27445 2.13232 2.37499 3.01233 3.08406 3.49613 3.54858 3.66689 3.71332 3.83477 4.10750 4.38603 4.48439 4.64744 4.72678 4.77702 4.85145 5.01182 5.07579 5.11567 5.24718 5.32118 5.37494 5.43249 5.45937 5.54798 5.64107 5.67865 5.71776 5.73529 5.81829 6.05229 6.11013 6.13891 6.16874 6.24351 6.42794 6.50525 6.51272 6.58418 6.59932 6.71051 7.29884 7.31348 7.52963 7.60634 8.35817 8.38251 9.08553 9.64723 10.55056 11.26573 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002489 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.760960 B =11247.278948 C =12158.963989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 N -0.592 5.592 4 C 0.548 3.452 5 O -0.508 6.508 6 C -0.106 4.106 7 C -0.120 4.120 8 C -0.084 4.084 9 C -0.004 4.004 10 C 0.270 3.730 11 N -0.534 5.534 12 C 0.265 3.735 13 N -0.484 5.484 14 H 0.444 0.556 15 N -0.302 5.302 16 C -0.090 4.090 17 C -0.067 4.067 18 C 0.101 3.899 19 C 0.111 3.889 20 N -0.614 5.614 21 C -0.305 4.305 22 H 0.081 0.919 23 C -0.019 4.019 24 N -0.922 5.922 25 Si 1.050 2.950 26 H -0.294 1.294 27 H -0.281 1.281 28 H -0.295 1.295 29 C 0.087 3.913 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.141 0.859 37 H 0.226 0.774 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.039 0.961 42 H 0.048 0.952 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 -24.540 -25.012 35.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.050 4.050 3 N -0.325 5.325 4 C 0.336 3.664 5 O -0.384 6.384 6 C -0.110 4.110 7 C -0.138 4.138 8 C -0.104 4.104 9 C -0.007 4.007 10 C -0.009 4.009 11 N -0.261 5.261 12 C -0.034 4.034 13 N -0.203 5.203 14 H 0.290 0.710 15 N -0.131 5.131 16 C -0.110 4.110 17 C -0.086 4.086 18 C -0.003 4.003 19 C -0.017 4.017 20 N -0.341 5.341 21 C -0.432 4.432 22 H 0.099 0.901 23 C -0.219 4.219 24 N -0.564 5.564 25 Si 0.881 3.119 26 H -0.222 1.222 27 H -0.207 1.207 28 H -0.222 1.222 29 C -0.040 4.040 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.178 0.822 36 H 0.158 0.842 37 H 0.242 0.758 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.354 -23.249 -24.385 33.774 hybrid contribution -1.487 -0.383 -1.159 1.924 sum -3.842 -23.632 -25.544 35.010 Atomic orbital electron populations 1.22290 0.95668 1.02449 1.03266 1.22380 0.94722 0.83353 1.04550 1.47889 1.60185 1.13281 1.11116 1.18310 0.78424 0.86715 0.82986 1.90833 1.46215 1.17780 1.83603 1.20252 0.97544 0.97287 0.95958 1.22205 0.99760 0.94231 0.97586 1.21139 0.97321 0.99634 0.92266 1.17614 0.97383 0.95493 0.90235 1.22368 0.89978 0.93993 0.94562 1.70527 1.29232 1.12623 1.13725 1.26135 0.87691 0.97539 0.92036 1.48153 1.24447 1.27400 1.20269 0.71050 1.78283 1.23522 1.11109 1.00220 1.21127 0.98234 0.94298 0.97347 1.21188 0.97338 0.98142 0.91962 1.23583 1.00838 0.90565 0.85317 1.22702 0.93819 0.89988 0.95181 1.46031 1.11401 1.30294 1.46381 1.19992 0.97596 1.07424 1.18142 0.90133 1.25680 1.00761 0.99649 0.95856 1.70946 1.29618 1.43055 1.12754 0.83867 0.76258 0.75505 0.76294 1.22191 1.20697 1.22179 1.23227 0.93904 0.87998 0.98842 0.91811 0.91201 0.91270 0.87757 0.90570 0.82198 0.84162 0.75812 0.84626 0.84135 0.86724 0.94273 0.93395 0.92854 0.90423 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.13 37.16 0.34 -1.17 16 2 C 0.07 0.73 5.60 -4.04 -0.02 0.71 16 3 N -0.59 -8.85 2.80 -166.88 -0.47 -9.32 16 4 C 0.55 9.04 6.95 -12.39 -0.09 8.96 16 5 O -0.51 -10.70 12.20 5.31 0.06 -10.63 16 6 C -0.11 -1.39 5.52 -104.92 -0.58 -1.97 16 7 C -0.12 -1.23 7.40 -39.24 -0.29 -1.52 16 8 C -0.08 -0.81 9.67 -39.32 -0.38 -1.19 16 9 C 0.00 -0.05 5.88 -104.82 -0.62 -0.66 16 10 C 0.27 2.86 7.77 -156.59 -1.22 1.65 16 11 N -0.53 -4.85 10.81 -12.39 -0.13 -4.98 16 12 C 0.27 1.29 13.11 -90.68 -1.19 0.10 16 13 N -0.48 -2.58 7.44 29.52 0.22 -2.36 16 14 H 0.44 0.62 8.96 -182.34 -1.63 -1.01 16 15 N -0.30 -2.98 12.42 32.09 0.40 -2.58 16 16 C -0.09 -0.99 9.66 -39.32 -0.38 -1.37 16 17 C -0.07 -0.84 9.58 -39.24 -0.38 -1.21 16 18 C 0.10 1.86 4.59 -67.68 -0.31 1.55 16 19 C 0.11 2.43 8.10 -8.51 -0.07 2.36 16 20 N -0.61 -16.43 3.60 -184.62 -0.67 -17.10 16 21 C -0.31 -9.32 10.91 -15.06 -0.16 -9.49 16 22 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 23 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 24 N -0.92 -30.03 13.70 55.49 0.76 -29.26 16 25 Si 1.05 28.67 25.72 -169.99 -4.37 24.30 16 26 H -0.29 -7.64 6.81 56.52 0.39 -7.25 16 27 H -0.28 -7.64 6.70 56.52 0.38 -7.26 16 28 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16 29 C 0.09 2.04 5.13 -8.37 -0.04 2.00 16 30 H 0.06 0.55 6.93 -51.93 -0.36 0.19 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 33 H 0.10 0.92 4.04 -51.93 -0.21 0.71 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.16 1.37 2.83 -52.49 -0.15 1.22 16 36 H 0.14 1.16 7.82 -52.49 -0.41 0.75 16 37 H 0.23 -0.12 8.06 -52.49 -0.42 -0.55 16 38 H 0.14 1.34 7.82 -52.49 -0.41 0.93 16 39 H 0.14 1.77 7.90 -52.49 -0.41 1.36 16 40 H 0.11 1.92 8.08 -51.93 -0.42 1.50 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 1.12 6.39 -51.93 -0.33 0.79 16 43 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16 44 H 0.08 1.95 4.71 -51.93 -0.24 1.71 16 45 H 0.04 1.08 6.70 -51.93 -0.35 0.73 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -40.27 363.31 -10.86 -51.13 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.66 Total: -2.71 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -5.48 Total: -1.95 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: 0.11 Total: -65.60 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.06 Total: -10.63 kcal Atomic # 14 Polarization: 28.67 SS G_CDS: -4.37 Total: 24.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -40.27 -10.86 -51.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957089784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.958 kcal (2) G-P(sol) polarization free energy of solvation -40.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds