Wall clock time and date at job start Wed Apr 1 2020 00:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46771 * 2 1 4 4 C 1.34768 * 120.00365 * 253.76868 * 3 2 1 5 5 O 1.21568 * 120.00565 * 181.19814 * 4 3 2 6 6 C 1.47725 * 120.00024 * 1.19827 * 4 3 2 7 7 C 1.39714 * 120.01958 * 28.54708 * 6 4 3 8 8 C 1.37670 * 119.96868 * 179.80966 * 7 6 4 9 9 C 1.39494 * 120.02492 * 0.44429 * 8 7 6 10 10 C 1.48297 * 119.97456 * 179.76691 * 9 8 7 11 11 N 1.34020 * 125.65164 * 0.02562 * 10 9 8 12 12 C 1.30644 * 109.78327 * 179.97438 * 11 10 9 13 13 N 1.34570 * 108.30469 * 0.02562 * 12 11 10 14 14 H 0.97000 * 126.73746 * 179.97438 * 13 12 11 15 15 N 1.31549 * 125.65413 * 179.71406 * 10 9 8 16 16 C 1.39504 * 120.05491 * 359.78472 * 9 8 7 17 17 C 1.37664 * 120.02098 * 0.02562 * 16 9 8 18 18 C 1.46506 * 119.99628 * 73.77368 * 3 2 1 19 19 C 1.53496 * 114.20422 * 232.87010 * 18 3 2 20 20 N 1.47067 * 87.98475 * 220.15023 * 19 18 3 21 21 C 1.36931 * 136.05455 * 207.08777 * 20 19 18 22 22 H 1.07999 * 120.00548 * 5.50272 * 21 20 19 23 23 C 1.38808 * 120.00103 * 185.50210 * 21 20 19 24 24 N 1.31616 * 120.00297 * 207.27037 * 23 21 20 25 25 Si 1.86806 * 119.99790 * 27.26704 * 23 21 20 26 26 H 1.48500 * 109.46963 * 270.00132 * 25 23 21 27 27 H 1.48501 * 109.46826 * 30.00216 * 25 23 21 28 28 H 1.48503 * 109.46786 * 150.00184 * 25 23 21 29 29 C 1.47069 * 87.88398 * 27.34105 * 20 19 18 30 30 H 1.08997 * 109.47521 * 59.99791 * 1 2 3 31 31 H 1.08998 * 109.46465 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46856 * 299.99074 * 1 2 3 33 33 H 1.09006 * 109.46969 * 240.00652 * 2 1 3 34 34 H 1.08997 * 109.47521 * 120.00209 * 2 1 3 35 35 H 1.07991 * 120.01399 * 0.02562 * 7 6 4 36 36 H 1.07995 * 119.98417 * 180.20939 * 8 7 6 37 37 H 1.07999 * 125.84475 * 179.97438 * 12 11 10 38 38 H 1.07997 * 119.98954 * 179.97438 * 16 9 8 39 39 H 1.07997 * 120.01143 * 179.97438 * 17 16 9 40 40 H 1.09001 * 113.28356 * 5.93677 * 18 3 2 41 41 H 1.09005 * 113.46820 * 105.36727 * 19 18 3 42 42 H 1.09002 * 113.52072 * 334.93858 * 19 18 3 43 43 H 0.97001 * 119.99858 * 354.97408 * 24 23 21 44 44 H 1.08997 * 113.46317 * 87.44273 * 29 20 19 45 45 H 1.08997 * 113.46167 * 217.87649 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.5505 1.9079 -1.1206 5 8 2.9755 3.0469 -1.1146 6 6 2.6173 1.1012 -2.3563 7 6 1.6709 0.1004 -2.5897 8 6 1.7318 -0.6482 -3.7435 9 6 2.7435 -0.4138 -4.6749 10 6 2.8112 -1.2243 -5.9150 11 7 1.9634 -2.2053 -6.2542 12 6 2.3102 -2.7100 -7.4083 13 7 3.4035 -2.0572 -7.8437 14 1 3.8835 -2.2170 -8.6713 15 7 3.7098 -1.0956 -6.8671 16 6 3.6919 0.5821 -4.4407 17 6 3.6306 1.3344 -3.2894 18 6 1.9281 2.1900 1.2183 19 6 1.2342 3.5453 1.0240 20 7 2.2455 4.1324 1.9159 21 6 2.3075 5.2043 2.7657 22 1 1.4239 5.7960 2.9541 23 6 3.5061 5.5304 3.3852 24 7 3.4996 6.1524 4.5451 25 14 5.1285 5.0865 2.5726 26 1 5.5522 3.7350 3.0189 27 1 4.9605 5.0905 1.0971 28 1 6.1625 6.0811 2.9558 29 6 3.1629 3.0654 1.4884 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.8898 -0.0836 -1.8670 36 1 0.9984 -1.4196 -3.9258 37 1 1.8062 -3.5139 -7.9241 38 1 4.4749 0.7623 -5.1623 39 1 4.3651 2.1051 -3.1080 40 1 1.5768 1.6279 2.0836 41 1 0.2239 3.5781 1.4321 42 1 1.2878 3.9189 0.0014 43 1 2.6607 6.4478 4.9323 44 1 3.7257 3.3118 0.5881 45 1 3.7959 2.6895 2.2922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957089784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:36 Heat of formation + Delta-G solvation = 158.793309 kcal Electronic energy + Delta-G solvation = -29068.787350 eV Core-core repulsion = 25091.053551 eV Total energy + Delta-G solvation = -3977.733799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.05042 -42.08652 -40.14242 -38.58449 -37.08704 -34.67079 -34.09783 -32.93893 -32.20440 -31.42191 -31.14182 -29.46967 -26.87813 -26.15026 -24.86742 -24.20742 -23.86282 -22.98751 -21.93263 -21.59274 -20.39333 -19.57523 -19.39359 -18.21556 -17.69853 -17.23533 -16.75321 -16.65487 -16.47620 -16.32369 -15.85296 -15.56113 -15.45271 -15.31452 -15.13157 -14.69096 -14.30139 -14.04611 -13.84646 -13.72812 -13.32658 -13.19293 -13.15746 -13.06860 -12.93233 -12.62882 -12.47809 -12.16457 -12.00343 -11.85489 -11.84072 -11.45989 -11.36545 -11.14510 -11.03148 -10.77432 -10.57169 -9.97282 -9.71093 -9.52072 -9.20226 -8.67336 -5.41748 -0.55990 0.32395 0.72952 1.33259 1.45762 1.55835 1.66388 1.74877 1.82585 2.07559 2.45429 2.81721 2.95676 3.04656 3.18046 3.42233 3.53848 3.58360 3.85579 3.95242 4.07244 4.15347 4.16824 4.29442 4.35018 4.41476 4.48956 4.60209 4.64489 4.68358 4.72496 4.84339 4.87874 4.94173 4.99229 5.00268 5.12691 5.16640 5.19781 5.28993 5.35840 5.38686 5.48094 5.70721 5.76898 5.94584 6.23525 6.39988 6.68791 7.00340 7.12953 7.32195 8.30912 8.84103 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.002489 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.760960 B =11247.278948 C =12158.963989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 N -0.588 5.588 4 C 0.545 3.455 5 O -0.564 6.564 6 C -0.125 4.125 7 C -0.103 4.103 8 C -0.075 4.075 9 C -0.004 4.004 10 C 0.250 3.750 11 N -0.564 5.564 12 C 0.282 3.718 13 N -0.473 5.473 14 H 0.460 0.540 15 N -0.334 5.334 16 C -0.091 4.091 17 C -0.077 4.077 18 C 0.138 3.862 19 C 0.110 3.890 20 N -0.644 5.644 21 C -0.298 4.298 22 H 0.055 0.945 23 C -0.071 4.071 24 N -0.951 5.951 25 Si 1.092 2.908 26 H -0.272 1.272 27 H -0.287 1.287 28 H -0.291 1.291 29 C 0.077 3.923 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.279 0.721 38 H 0.140 0.860 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.251 0.749 44 H 0.065 0.935 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -29.077 -27.419 40.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.055 4.055 3 N -0.319 5.319 4 C 0.335 3.665 5 O -0.445 6.445 6 C -0.129 4.129 7 C -0.121 4.121 8 C -0.095 4.095 9 C -0.007 4.007 10 C -0.029 4.029 11 N -0.292 5.292 12 C -0.015 4.015 13 N -0.193 5.193 14 H 0.310 0.690 15 N -0.165 5.165 16 C -0.111 4.111 17 C -0.096 4.096 18 C 0.033 3.967 19 C -0.017 4.017 20 N -0.372 5.372 21 C -0.426 4.426 22 H 0.073 0.927 23 C -0.266 4.266 24 N -0.595 5.595 25 Si 0.919 3.081 26 H -0.198 1.198 27 H -0.214 1.214 28 H -0.218 1.218 29 C -0.048 4.048 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.198 0.802 36 H 0.179 0.821 37 H 0.294 0.706 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.476 -27.877 -26.844 38.856 hybrid contribution -1.248 0.902 -0.661 1.676 sum -4.724 -26.975 -27.505 38.814 Atomic orbital electron populations 1.22295 0.93938 1.04523 1.02692 1.22775 0.96054 0.80311 1.06337 1.47913 1.59791 1.14834 1.09350 1.18875 0.77246 0.86254 0.84133 1.90801 1.48669 1.20329 1.84657 1.20015 0.99350 0.98648 0.94860 1.22332 0.98961 0.92748 0.98035 1.21337 0.97153 0.99587 0.91447 1.17850 0.97050 0.94951 0.90808 1.22331 0.90943 0.94930 0.94711 1.70494 1.29882 1.13016 1.15802 1.27138 0.86585 0.97102 0.90710 1.48109 1.24711 1.26310 1.20162 0.69035 1.78179 1.24224 1.12886 1.01168 1.21118 0.98774 0.94408 0.96847 1.21133 0.97410 0.98348 0.92662 1.22999 0.96256 0.89867 0.87551 1.22799 0.93750 0.91606 0.93505 1.46161 1.14043 1.29900 1.47046 1.19909 0.96581 1.07795 1.18294 0.92707 1.26695 1.03633 1.00225 0.96010 1.71020 1.29052 1.45297 1.14177 0.83259 0.73408 0.76493 0.74964 1.19814 1.21367 1.21833 1.23330 0.95402 0.88298 0.97802 0.91974 0.87786 0.92322 0.86095 0.88789 0.80159 0.82057 0.70608 0.84182 0.85527 0.83886 0.92961 0.94741 0.93947 0.91798 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.13 71.98 0.66 -1.60 16 2 C 0.07 1.09 5.60 86.38 0.48 1.57 16 3 N -0.59 -16.55 2.80 -800.15 -2.24 -18.80 16 4 C 0.54 17.88 6.95 86.75 0.60 18.48 16 5 O -0.56 -24.59 12.20 -3.93 -0.05 -24.64 16 6 C -0.12 -3.16 5.52 -20.06 -0.11 -3.27 16 7 C -0.10 -1.84 7.40 22.49 0.17 -1.68 16 8 C -0.08 -1.26 9.67 22.44 0.22 -1.04 16 9 C 0.00 -0.08 5.88 -19.99 -0.12 -0.19 16 10 C 0.25 4.83 7.77 137.41 1.07 5.89 16 11 N -0.56 -8.53 10.81 -193.12 -2.09 -10.62 16 12 C 0.28 1.66 13.11 180.37 2.36 4.02 16 13 N -0.47 -3.67 7.44 -60.51 -0.45 -4.12 16 14 H 0.46 -0.07 8.96 -213.10 -1.91 -1.98 16 15 N -0.33 -6.05 12.42 -52.39 -0.65 -6.70 16 16 C -0.09 -1.98 9.66 22.44 0.22 -1.76 16 17 C -0.08 -1.93 9.58 22.49 0.22 -1.72 16 18 C 0.14 4.92 4.59 45.55 0.21 5.13 16 19 C 0.11 4.83 8.10 83.18 0.67 5.51 16 20 N -0.64 -35.01 3.60 -738.01 -2.66 -37.67 16 21 C -0.30 -18.76 10.91 84.03 0.92 -17.85 16 22 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 23 C -0.07 -4.54 5.50 84.86 0.47 -4.08 16 24 N -0.95 -63.68 13.70 21.65 0.30 -63.39 16 25 Si 1.09 59.59 25.72 68.60 1.76 61.35 16 26 H -0.27 -13.71 6.81 99.48 0.68 -13.03 16 27 H -0.29 -15.81 6.70 99.48 0.67 -15.15 16 28 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 29 C 0.08 3.66 5.13 83.26 0.43 4.08 16 30 H 0.06 0.84 6.93 -2.39 -0.02 0.82 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.92 8.05 -2.39 -0.02 0.90 16 33 H 0.12 1.66 4.04 -2.39 -0.01 1.65 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.18 2.41 2.83 -2.92 -0.01 2.40 16 36 H 0.16 2.06 7.82 -2.91 -0.02 2.03 16 37 H 0.28 -1.84 8.06 -2.91 -0.02 -1.87 16 38 H 0.14 2.82 7.82 -2.91 -0.02 2.79 16 39 H 0.13 3.46 7.90 -2.91 -0.02 3.43 16 40 H 0.14 4.35 8.08 -2.39 -0.02 4.33 16 41 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.03 1.64 6.39 -2.39 -0.02 1.63 16 43 H 0.25 16.71 8.73 -92.71 -0.81 15.90 16 44 H 0.06 3.29 4.71 -2.39 -0.01 3.28 16 45 H 0.04 1.87 6.70 -2.39 -0.02 1.85 16 Total: -1.00 -92.70 363.31 1.42 -91.28 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -0.96 Total: 1.80 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 8.46 Total: 11.50 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -7.79 Total: -141.28 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 59.59 SS G_CDS: 1.76 Total: 61.35 kcal Total: -92.70 1.42 -91.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957089784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.073 kcal (2) G-P(sol) polarization free energy of solvation -92.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds