Wall clock time and date at job start Wed Apr 1 2020 00:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47469 * 2 1 4 4 C 1.34777 * 120.00093 * 82.64838 * 3 2 1 5 5 O 1.21511 * 119.99837 * 183.30048 * 4 3 2 6 6 C 1.48177 * 119.99788 * 3.30237 * 4 3 2 7 7 C 1.39131 * 119.69117 * 172.82964 * 6 4 3 8 8 C 1.39275 * 118.97284 * 180.29104 * 7 6 4 9 9 N 1.39968 * 120.81727 * 179.75454 * 8 7 6 10 10 C 1.37156 * 126.48151 * 179.71966 * 9 8 7 11 11 C 1.34621 * 106.82997 * 180.02562 * 10 9 8 12 12 N 1.34151 * 108.21303 * 0.02562 * 11 10 9 13 13 C 1.30492 * 109.36506 * 359.97438 * 12 11 10 14 14 C 1.39263 * 118.35958 * 359.48375 * 8 7 6 15 15 C 1.38344 * 119.27939 * 0.24683 * 14 8 7 16 16 N 1.31598 * 120.97461 * 0.02562 * 15 14 8 17 17 C 1.46503 * 119.99573 * 262.65188 * 3 2 1 18 18 C 1.53947 * 113.73867 * 223.23298 * 17 3 2 19 19 N 1.47816 * 86.03567 * 222.08729 * 18 17 3 20 20 C 1.36938 * 134.45688 * 204.64891 * 19 18 17 21 21 H 1.07997 * 119.99820 * 179.86388 * 20 19 18 22 22 C 1.38817 * 119.99860 * 359.85870 * 20 19 18 23 23 N 1.31614 * 119.99802 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99703 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47156 * 90.00371 * 24 22 20 26 26 H 1.48506 * 109.46872 * 210.00066 * 24 22 20 27 27 H 1.48501 * 109.47290 * 329.99789 * 24 22 20 28 28 C 1.47580 * 91.04930 * 24.54699 * 19 18 17 29 29 H 1.08994 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47005 * 300.00613 * 1 2 3 31 31 H 1.09007 * 109.46870 * 60.00111 * 1 2 3 32 32 H 1.09001 * 109.47395 * 239.99585 * 2 1 3 33 33 H 1.08997 * 109.47067 * 119.99850 * 2 1 3 34 34 H 1.08005 * 120.51140 * 0.04845 * 7 6 4 35 35 H 1.07995 * 126.58359 * 359.76943 * 10 9 8 36 36 H 1.07997 * 125.89367 * 179.97438 * 11 10 9 37 37 H 1.07995 * 125.72058 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.36162 * 180.27517 * 14 8 7 39 39 H 1.07997 * 119.51319 * 180.02562 * 15 14 8 40 40 H 1.09000 * 112.94842 * 354.82079 * 17 3 2 41 41 H 1.09001 * 113.76723 * 336.34352 * 18 17 3 42 42 H 1.08998 * 113.77523 * 107.74869 * 18 17 3 43 43 H 0.97004 * 119.99519 * 180.02562 * 23 22 20 44 44 H 1.09004 * 113.76914 * 221.14906 * 28 19 18 45 45 H 1.09002 * 113.77098 * 89.75871 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1022 2.0664 1.1576 5 8 2.4501 3.2306 1.1507 6 6 1.7703 1.3998 2.4387 7 6 2.0010 2.0623 3.6402 8 6 1.6892 1.4194 4.8357 9 7 1.9103 2.0478 6.0667 10 6 1.6427 1.5280 7.3074 11 6 2.0051 2.4611 8.2074 12 7 2.4810 3.5238 7.5412 13 6 2.4298 3.2888 6.2586 14 6 1.1467 0.1382 4.7759 15 6 0.9412 -0.4526 3.5419 16 7 1.2510 0.1779 2.4291 17 6 2.4156 2.0176 -1.2584 18 6 3.7207 2.8279 -1.1582 19 7 3.0315 3.8455 -1.9795 20 6 3.4484 4.8367 -2.8273 21 1 2.7223 5.4639 -3.3232 22 6 4.8042 5.0354 -3.0494 23 7 5.6889 4.2708 -2.4454 24 14 5.3728 6.3880 -4.2054 25 1 5.5676 7.6449 -3.4389 26 1 6.6558 5.9907 -4.8389 27 1 4.3472 6.6037 -5.2575 28 6 1.7144 3.3627 -1.5210 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.4192 3.0581 3.6459 35 1 1.2184 0.5581 7.5210 36 1 1.9256 2.3703 9.2807 37 1 2.7464 3.9671 5.4802 38 1 0.8887 -0.3884 5.6829 39 1 0.5203 -1.4459 3.4911 40 1 2.3871 1.3348 -2.1075 41 1 3.9531 3.1631 -0.1474 42 1 4.5685 2.3591 -1.6577 43 1 6.6363 4.4099 -2.6003 44 1 0.9632 3.3200 -2.3097 45 1 1.3562 3.8553 -0.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957089801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:07 Heat of formation + Delta-G solvation = 168.495746 kcal Electronic energy + Delta-G solvation = -29442.050839 eV Core-core repulsion = 25464.737769 eV Total energy + Delta-G solvation = -3977.313070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.75988 -40.98344 -39.46942 -36.87362 -35.78272 -34.81651 -32.19552 -31.79852 -30.89626 -30.02026 -29.77250 -27.42198 -25.29692 -24.66011 -24.61270 -23.24506 -23.11431 -21.75393 -21.29084 -20.38270 -19.48792 -18.07963 -16.89483 -16.78528 -16.48310 -16.37253 -16.01470 -15.39072 -15.20800 -14.98101 -14.69364 -14.58990 -14.26660 -14.08047 -13.92577 -13.80105 -13.61386 -13.46709 -12.78834 -12.40080 -12.31586 -12.20367 -11.73619 -11.60038 -11.34337 -11.23639 -10.94838 -10.81959 -10.63881 -10.49098 -10.13928 -9.95015 -9.92069 -9.65081 -9.46552 -9.41554 -9.23009 -8.93613 -8.61802 -8.07121 -6.73341 -5.67224 -2.97882 0.14855 0.42783 1.82456 2.09768 2.70810 2.80090 3.09772 3.45325 3.49813 3.51546 3.60588 3.83909 4.03932 4.12882 4.28166 4.43032 4.55978 4.56368 4.76607 4.97794 5.02001 5.15339 5.24310 5.28840 5.31324 5.33633 5.46663 5.59823 5.65770 5.75805 5.78378 5.86902 5.91237 5.98418 6.15353 6.27051 6.39346 6.47466 6.62834 6.67983 6.72967 6.96334 7.31248 7.35843 7.58100 7.61420 7.64804 7.76266 8.06860 8.41704 9.14048 9.80197 10.71041 11.50152 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002904 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.230325 B = 9641.066560 C =11339.887913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.098 3.902 3 N -0.577 5.577 4 C 0.557 3.443 5 O -0.502 6.502 6 C 0.123 3.877 7 C -0.131 4.131 8 C 0.175 3.825 9 N -0.416 5.416 10 C -0.055 4.055 11 C -0.018 4.018 12 N -0.482 5.482 13 C 0.202 3.798 14 C -0.175 4.175 15 C 0.119 3.881 16 N -0.450 5.450 17 C 0.087 3.913 18 C 0.156 3.844 19 N -0.603 5.603 20 C -0.216 4.216 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.113 3.887 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.215 0.785 38 H 0.144 0.856 39 H 0.172 0.828 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.015 -15.719 17.463 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 N -0.309 5.309 4 C 0.341 3.659 5 O -0.377 6.377 6 C -0.016 4.016 7 C -0.154 4.154 8 C 0.074 3.926 9 N -0.096 5.096 10 C -0.184 4.184 11 C -0.164 4.164 12 N -0.198 5.198 13 C -0.079 4.079 14 C -0.197 4.197 15 C -0.039 4.039 16 N -0.163 5.163 17 C -0.016 4.016 18 C 0.030 3.970 19 N -0.330 5.330 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.014 4.014 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.175 0.825 35 H 0.197 0.803 36 H 0.194 0.806 37 H 0.231 0.769 38 H 0.162 0.838 39 H 0.189 0.811 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.429 -14.580 16.757 24.980 hybrid contribution 0.108 0.327 0.027 0.345 sum -11.321 -14.253 16.785 24.760 Atomic orbital electron populations 1.22022 0.96175 1.01278 1.01477 1.22068 0.94562 0.82299 1.03541 1.48012 1.62126 1.14062 1.06669 1.17718 0.79527 0.86061 0.82544 1.90899 1.45710 1.15231 1.85834 1.21416 0.95595 0.90481 0.94083 1.21805 1.01178 1.02497 0.89909 1.17958 0.97659 0.92892 0.84085 1.43233 1.46862 1.14916 1.04562 1.22790 1.10133 1.02516 0.82992 1.22439 1.03458 0.90424 1.00039 1.70400 1.19662 1.26982 1.02794 1.25581 1.00662 0.85815 0.95860 1.22034 1.02466 0.93999 1.01205 1.22901 0.94585 0.99968 0.86466 1.68339 1.10369 1.07718 1.29863 1.24208 1.00181 0.93632 0.83613 1.22728 0.92220 0.86488 0.95568 1.45679 1.00557 1.37848 1.48875 1.18987 0.91100 1.07794 1.16514 0.90315 1.24774 0.95572 0.99676 1.00556 1.69829 1.00442 1.40516 1.45971 0.86124 0.77961 0.81500 0.80210 1.21672 1.21709 1.20683 1.22910 0.90558 0.91122 0.96848 0.92316 0.92634 0.93286 0.91476 0.87374 0.82485 0.80278 0.80611 0.76879 0.83777 0.81089 0.87536 0.92869 0.91415 0.93778 0.94456 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.56 37.16 0.36 -1.23 16 2 C 0.10 1.17 5.74 -4.04 -0.02 1.14 16 3 N -0.58 -9.25 2.75 -168.89 -0.46 -9.72 16 4 C 0.56 9.39 7.02 -12.18 -0.09 9.31 16 5 O -0.50 -10.51 12.05 5.36 0.06 -10.44 16 6 C 0.12 1.57 6.51 -83.04 -0.54 1.03 16 7 C -0.13 -1.52 9.06 -38.86 -0.35 -1.87 16 8 C 0.18 1.65 6.67 -83.38 -0.56 1.09 16 9 N -0.42 -3.98 2.99 -61.91 -0.18 -4.17 16 10 C -0.06 -0.44 10.89 -16.45 -0.18 -0.61 16 11 C -0.02 -0.17 11.85 -17.82 -0.21 -0.38 16 12 N -0.48 -5.78 11.24 -14.47 -0.16 -5.95 16 13 C 0.20 2.18 11.95 -89.60 -1.07 1.11 16 14 C -0.17 -1.18 9.55 -39.16 -0.37 -1.55 16 15 C 0.12 0.81 11.17 -17.61 -0.20 0.62 16 16 N -0.45 -4.52 4.31 -9.87 -0.04 -4.57 16 17 C 0.09 1.69 4.60 -70.14 -0.32 1.37 16 18 C 0.16 3.89 6.79 -2.84 -0.02 3.87 16 19 N -0.60 -16.39 3.70 -177.87 -0.66 -17.04 16 20 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.81 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -28.26 11.39 55.49 0.63 -27.63 16 24 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.11 2.50 8.27 -2.97 -0.02 2.48 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.62 6.72 -51.92 -0.35 0.28 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 33 H 0.11 1.19 5.27 -52.09 -0.27 0.92 16 34 H 0.16 1.87 6.51 -52.48 -0.34 1.53 16 35 H 0.18 0.74 7.22 -52.49 -0.38 0.36 16 36 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.21 1.90 7.15 -52.49 -0.38 1.52 16 38 H 0.14 0.54 6.94 -52.48 -0.36 0.18 16 39 H 0.17 0.55 8.06 -52.49 -0.42 0.12 16 40 H 0.11 1.92 7.89 -51.93 -0.41 1.51 16 41 H 0.05 1.44 5.68 -51.93 -0.29 1.14 16 42 H 0.07 1.84 7.16 -51.93 -0.37 1.47 16 43 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 1.12 6.33 -51.93 -0.33 0.80 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -36.74 366.53 -9.73 -46.47 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.56 Total: 0.17 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -3.86 Total: 9.50 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -0.88 Total: -69.07 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.06 Total: -10.44 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.74 -9.73 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957089801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.966 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds