Wall clock time and date at job start Wed Apr 1 2020 00:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47469 * 2 1 4 4 C 1.34777 * 120.00093 * 82.64838 * 3 2 1 5 5 O 1.21511 * 119.99837 * 183.30048 * 4 3 2 6 6 C 1.48177 * 119.99788 * 3.30237 * 4 3 2 7 7 C 1.39131 * 119.69117 * 172.82964 * 6 4 3 8 8 C 1.39275 * 118.97284 * 180.29104 * 7 6 4 9 9 N 1.39968 * 120.81727 * 179.75454 * 8 7 6 10 10 C 1.37156 * 126.48151 * 179.71966 * 9 8 7 11 11 C 1.34621 * 106.82997 * 180.02562 * 10 9 8 12 12 N 1.34151 * 108.21303 * 0.02562 * 11 10 9 13 13 C 1.30492 * 109.36506 * 359.97438 * 12 11 10 14 14 C 1.39263 * 118.35958 * 359.48375 * 8 7 6 15 15 C 1.38344 * 119.27939 * 0.24683 * 14 8 7 16 16 N 1.31598 * 120.97461 * 0.02562 * 15 14 8 17 17 C 1.46503 * 119.99573 * 262.65188 * 3 2 1 18 18 C 1.53947 * 113.73867 * 223.23298 * 17 3 2 19 19 N 1.47816 * 86.03567 * 222.08729 * 18 17 3 20 20 C 1.36938 * 134.45688 * 204.64891 * 19 18 17 21 21 H 1.07997 * 119.99820 * 179.86388 * 20 19 18 22 22 C 1.38817 * 119.99860 * 359.85870 * 20 19 18 23 23 N 1.31614 * 119.99802 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99703 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47156 * 90.00371 * 24 22 20 26 26 H 1.48506 * 109.46872 * 210.00066 * 24 22 20 27 27 H 1.48501 * 109.47290 * 329.99789 * 24 22 20 28 28 C 1.47580 * 91.04930 * 24.54699 * 19 18 17 29 29 H 1.08994 * 109.47089 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47005 * 300.00613 * 1 2 3 31 31 H 1.09007 * 109.46870 * 60.00111 * 1 2 3 32 32 H 1.09001 * 109.47395 * 239.99585 * 2 1 3 33 33 H 1.08997 * 109.47067 * 119.99850 * 2 1 3 34 34 H 1.08005 * 120.51140 * 0.04845 * 7 6 4 35 35 H 1.07995 * 126.58359 * 359.76943 * 10 9 8 36 36 H 1.07997 * 125.89367 * 179.97438 * 11 10 9 37 37 H 1.07995 * 125.72058 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.36162 * 180.27517 * 14 8 7 39 39 H 1.07997 * 119.51319 * 180.02562 * 15 14 8 40 40 H 1.09000 * 112.94842 * 354.82079 * 17 3 2 41 41 H 1.09001 * 113.76723 * 336.34352 * 18 17 3 42 42 H 1.08998 * 113.77523 * 107.74869 * 18 17 3 43 43 H 0.97004 * 119.99519 * 180.02562 * 23 22 20 44 44 H 1.09004 * 113.76914 * 221.14906 * 28 19 18 45 45 H 1.09002 * 113.77098 * 89.75871 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1022 2.0664 1.1576 5 8 2.4501 3.2306 1.1507 6 6 1.7703 1.3998 2.4387 7 6 2.0010 2.0623 3.6402 8 6 1.6892 1.4194 4.8357 9 7 1.9103 2.0478 6.0667 10 6 1.6427 1.5280 7.3074 11 6 2.0051 2.4611 8.2074 12 7 2.4810 3.5238 7.5412 13 6 2.4298 3.2888 6.2586 14 6 1.1467 0.1382 4.7759 15 6 0.9412 -0.4526 3.5419 16 7 1.2510 0.1779 2.4291 17 6 2.4156 2.0176 -1.2584 18 6 3.7207 2.8279 -1.1582 19 7 3.0315 3.8455 -1.9795 20 6 3.4484 4.8367 -2.8273 21 1 2.7223 5.4639 -3.3232 22 6 4.8042 5.0354 -3.0494 23 7 5.6889 4.2708 -2.4454 24 14 5.3728 6.3880 -4.2054 25 1 5.5676 7.6449 -3.4389 26 1 6.6558 5.9907 -4.8389 27 1 4.3472 6.6037 -5.2575 28 6 1.7144 3.3627 -1.5210 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.4192 3.0581 3.6459 35 1 1.2184 0.5581 7.5210 36 1 1.9256 2.3703 9.2807 37 1 2.7464 3.9671 5.4802 38 1 0.8887 -0.3884 5.6829 39 1 0.5203 -1.4459 3.4911 40 1 2.3871 1.3348 -2.1075 41 1 3.9531 3.1631 -0.1474 42 1 4.5685 2.3591 -1.6577 43 1 6.6363 4.4099 -2.6003 44 1 0.9632 3.3200 -2.3097 45 1 1.3562 3.8553 -0.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957089801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:06 Heat of formation + Delta-G solvation = 145.807865 kcal Electronic energy + Delta-G solvation = -29443.034659 eV Core-core repulsion = 25464.737769 eV Total energy + Delta-G solvation = -3978.296890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.46846 -42.02703 -40.65967 -38.53550 -36.89671 -35.76895 -34.16553 -32.71872 -31.70353 -31.14205 -30.50626 -29.29880 -26.59818 -26.50084 -25.37530 -24.70587 -24.14170 -22.63681 -22.12011 -21.67518 -20.68426 -19.09025 -18.77361 -17.83500 -17.72166 -17.13927 -16.99580 -16.76293 -16.35392 -16.34063 -16.08295 -15.58605 -15.39190 -15.02377 -14.99010 -14.88974 -14.52496 -14.28544 -14.24745 -14.06149 -13.68738 -13.38633 -13.07692 -12.96479 -12.80016 -12.65936 -12.54405 -12.41116 -12.00145 -11.90467 -11.73165 -11.49669 -11.31587 -11.19230 -10.73994 -10.44002 -10.30924 -10.10234 -9.61298 -9.46967 -8.89945 -7.91155 -5.24787 -0.61429 -0.31679 1.12758 1.38740 1.42365 1.46333 1.54614 1.72963 1.90208 2.01915 2.47805 2.70805 2.96390 3.27657 3.32965 3.46901 3.50028 3.62600 3.78079 3.79391 3.84175 4.01919 4.25103 4.32761 4.36860 4.46429 4.51332 4.54634 4.60429 4.68097 4.69725 4.83312 4.83857 4.96087 5.03474 5.15231 5.21742 5.22958 5.32791 5.42086 5.48694 5.63625 5.66023 5.88723 5.92000 6.01409 6.41879 6.63602 6.87322 6.89942 7.14489 7.58632 8.56072 9.26130 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002904 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.230325 B = 9641.066560 C =11339.887913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.094 3.906 3 N -0.578 5.578 4 C 0.550 3.450 5 O -0.559 6.559 6 C 0.103 3.897 7 C -0.145 4.145 8 C 0.167 3.833 9 N -0.417 5.417 10 C -0.037 4.037 11 C -0.044 4.044 12 N -0.516 5.516 13 C 0.175 3.825 14 C -0.146 4.146 15 C 0.130 3.870 16 N -0.452 5.452 17 C 0.123 3.877 18 C 0.155 3.845 19 N -0.632 5.632 20 C -0.235 4.235 21 H 0.083 0.917 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.984 3.016 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.264 1.264 28 C 0.115 3.885 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.227 0.773 36 H 0.199 0.801 37 H 0.212 0.788 38 H 0.190 0.810 39 H 0.223 0.777 40 H 0.130 0.870 41 H 0.025 0.975 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.057 0.943 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 -19.453 18.637 30.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 N -0.308 5.308 4 C 0.337 3.663 5 O -0.437 6.437 6 C -0.034 4.034 7 C -0.168 4.168 8 C 0.065 3.935 9 N -0.097 5.097 10 C -0.165 4.165 11 C -0.188 4.188 12 N -0.234 5.234 13 C -0.106 4.106 14 C -0.168 4.168 15 C -0.029 4.029 16 N -0.165 5.165 17 C 0.018 3.982 18 C 0.029 3.971 19 N -0.359 5.359 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.811 3.189 25 H -0.218 1.218 26 H -0.216 1.216 27 H -0.188 1.188 28 C -0.012 4.012 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.243 0.757 36 H 0.216 0.784 37 H 0.228 0.772 38 H 0.207 0.793 39 H 0.239 0.761 40 H 0.148 0.852 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.932 -18.357 17.936 29.202 hybrid contribution 0.785 1.385 -0.150 1.599 sum -13.146 -16.972 17.786 27.879 Atomic orbital electron populations 1.21948 0.94634 1.02982 1.00467 1.22404 0.95717 0.79603 1.04924 1.48038 1.61958 1.15629 1.05175 1.18392 0.78177 0.85601 0.84103 1.90861 1.48093 1.17858 1.86911 1.20634 0.98769 0.92082 0.91917 1.21662 1.02041 1.02051 0.91017 1.18066 0.98345 0.93978 0.83070 1.43315 1.46569 1.14543 1.05283 1.23511 1.08011 1.03519 0.81493 1.22975 1.04089 0.90224 1.01514 1.70350 1.20652 1.28826 1.03540 1.25611 1.02191 0.87026 0.95792 1.22578 0.98997 0.92095 1.03101 1.23746 0.92792 1.01137 0.85257 1.68212 1.10168 1.06262 1.31830 1.23529 0.95561 0.93104 0.85985 1.22520 0.93867 0.87420 0.93321 1.46099 1.02970 1.37928 1.48878 1.19429 0.91662 1.08442 1.16803 0.89899 1.25706 0.95647 1.02283 1.02604 1.70046 1.00323 1.42238 1.47640 0.85005 0.77562 0.78037 0.78272 1.21756 1.21589 1.18831 1.22955 0.89407 0.92274 0.96519 0.89100 0.93421 0.94556 0.90257 0.85902 0.84725 0.75689 0.78367 0.77181 0.79312 0.76090 0.85230 0.95710 0.94376 0.94311 0.92489 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.56 71.98 0.69 -1.86 16 2 C 0.09 2.03 5.74 86.38 0.50 2.53 16 3 N -0.58 -18.66 2.75 -806.53 -2.22 -20.88 16 4 C 0.55 19.50 7.02 86.88 0.61 20.11 16 5 O -0.56 -25.58 12.05 -3.75 -0.05 -25.62 16 6 C 0.10 2.63 6.51 41.86 0.27 2.90 16 7 C -0.14 -3.47 9.06 22.73 0.21 -3.26 16 8 C 0.17 2.81 6.67 38.34 0.26 3.06 16 9 N -0.42 -7.41 2.99 -349.80 -1.04 -8.46 16 10 C -0.04 -0.46 10.89 83.03 0.90 0.45 16 11 C -0.04 -0.74 11.85 83.51 0.99 0.25 16 12 N -0.52 -12.68 11.24 -199.69 -2.25 -14.93 16 13 C 0.17 3.97 11.95 179.99 2.15 6.13 16 14 C -0.15 -1.20 9.55 22.54 0.22 -0.99 16 15 C 0.13 1.06 11.17 84.75 0.95 2.00 16 16 N -0.45 -7.74 4.31 -185.12 -0.80 -8.54 16 17 C 0.12 4.90 4.60 46.75 0.21 5.11 16 18 C 0.15 8.23 6.79 86.44 0.59 8.82 16 19 N -0.63 -35.88 3.70 -716.65 -2.65 -38.53 16 20 C -0.23 -14.25 10.70 84.03 0.90 -13.35 16 21 H 0.08 4.79 7.83 -2.91 -0.02 4.77 16 22 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 23 N -0.95 -61.26 11.39 21.65 0.25 -61.01 16 24 Si 0.98 48.32 29.55 68.60 2.03 50.35 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 27 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.11 5.26 8.27 86.48 0.72 5.97 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.94 6.72 -2.38 -0.02 0.93 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 1.53 7.85 -2.39 -0.02 1.51 16 33 H 0.12 2.33 5.27 -2.71 -0.01 2.32 16 34 H 0.13 3.72 6.51 -2.91 -0.02 3.70 16 35 H 0.23 0.44 7.22 -2.91 -0.02 0.42 16 36 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.21 4.48 7.15 -2.91 -0.02 4.46 16 38 H 0.19 -0.08 6.94 -2.91 -0.02 -0.10 16 39 H 0.22 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.13 4.58 7.89 -2.39 -0.02 4.56 16 41 H 0.03 1.47 5.68 -2.39 -0.01 1.46 16 42 H 0.04 2.21 7.16 -2.39 -0.02 2.19 16 43 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 45 H 0.03 1.66 6.33 -2.39 -0.02 1.64 16 Total: -1.00 -88.35 366.53 4.91 -83.44 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.03 Total: 10.08 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 10.62 Total: 34.10 kcal Atomic # 7 Polarization: -143.63 SS G_CDS: -8.71 Total: -152.35 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -88.35 4.91 -83.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957089801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.248 kcal (2) G-P(sol) polarization free energy of solvation -88.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds