Wall clock time and date at job start Wed Apr 1 2020 00:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46838 * 2 1 4 4 C 1.34775 * 119.99640 * 99.16044 * 3 2 1 5 5 O 1.21576 * 119.99846 * 186.77075 * 4 3 2 6 6 C 1.47689 * 120.00437 * 6.77680 * 4 3 2 7 7 C 1.39696 * 120.07891 * 149.70386 * 6 4 3 8 8 C 1.37736 * 119.91874 * 179.97438 * 7 6 4 9 9 C 1.39029 * 120.07904 * 0.02562 * 8 7 6 10 10 N 1.39938 * 119.92068 * 179.97438 * 9 8 7 11 11 C 1.36316 * 126.86824 * 179.97438 * 10 9 8 12 12 C 1.34963 * 106.77855 * 179.97438 * 11 10 9 13 13 N 1.33371 * 109.01650 * 359.97438 * 12 11 10 14 14 N 1.28760 * 109.92943 * 0.02562 * 13 12 11 15 15 C 1.39026 * 120.16290 * 0.27111 * 9 8 7 16 16 C 1.37750 * 120.07399 * 359.45130 * 15 9 8 17 17 C 1.46494 * 120.00025 * 279.16188 * 3 2 1 18 18 C 1.53943 * 113.74054 * 222.66158 * 17 3 2 19 19 N 1.47811 * 86.03957 * 222.08496 * 18 17 3 20 20 C 1.36935 * 134.45878 * 204.64926 * 19 18 17 21 21 H 1.08007 * 119.99912 * 184.82947 * 20 19 18 22 22 C 1.38812 * 120.00022 * 4.82791 * 20 19 18 23 23 N 1.31620 * 119.99932 * 5.05300 * 22 20 19 24 24 Si 1.86802 * 120.00009 * 185.05166 * 22 20 19 25 25 H 1.48507 * 109.46851 * 94.99664 * 24 22 20 26 26 H 1.48494 * 109.47177 * 214.99686 * 24 22 20 27 27 H 1.48503 * 109.47094 * 335.00330 * 24 22 20 28 28 C 1.47586 * 91.04703 * 24.54846 * 19 18 17 29 29 H 1.08999 * 109.47598 * 299.99878 * 1 2 3 30 30 H 1.09000 * 109.47415 * 60.00381 * 1 2 3 31 31 H 1.09003 * 109.46682 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47598 * 240.00122 * 2 1 3 33 33 H 1.09000 * 109.47415 * 119.99619 * 2 1 3 34 34 H 1.08002 * 120.04192 * 359.96387 * 7 6 4 35 35 H 1.08005 * 119.96168 * 180.02562 * 8 7 6 36 36 H 1.07996 * 126.60437 * 359.70437 * 11 10 9 37 37 H 1.07996 * 125.49074 * 179.97438 * 12 11 10 38 38 H 1.07991 * 119.96280 * 179.70316 * 15 9 8 39 39 H 1.07998 * 120.03719 * 180.27832 * 16 15 9 40 40 H 1.09003 * 112.94663 * 354.25346 * 17 3 2 41 41 H 1.09001 * 113.77253 * 336.35416 * 18 17 3 42 42 H 1.09007 * 113.77122 * 107.74724 * 18 17 3 43 43 H 0.97002 * 119.99296 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.76982 * 221.14952 * 28 19 18 45 45 H 1.09001 * 113.76562 * 89.75637 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4180 1.9546 1.1523 5 8 2.7061 3.1356 1.1758 6 6 2.5063 1.1485 2.3866 7 6 3.4486 1.4694 3.3666 8 6 3.5277 0.7156 4.5167 9 6 2.6715 -0.3638 4.7026 10 7 2.7551 -1.1277 5.8721 11 6 1.9912 -2.2082 6.1996 12 6 2.4128 -2.6310 7.4100 13 7 3.4057 -1.8426 7.8240 14 7 3.6427 -0.9352 6.9418 15 6 1.7366 -0.6900 3.7267 16 6 1.6479 0.0629 2.5766 17 6 2.0719 2.1392 -1.2525 18 6 3.3604 2.9643 -1.4229 19 7 2.4830 4.0384 -1.9341 20 6 2.6653 5.1121 -2.7642 21 1 1.8590 5.8120 -2.9268 22 6 3.8865 5.3009 -3.3967 23 7 4.8357 4.3968 -3.2783 24 14 4.1826 6.8382 -4.4158 25 1 4.8582 7.8634 -3.5803 26 1 5.0423 6.5028 -5.5792 27 1 2.8828 7.3706 -4.8978 28 6 1.3316 3.4876 -1.1931 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.1145 2.3075 3.2226 35 1 4.2558 0.9634 5.2751 36 1 1.1983 -2.6398 5.6068 37 1 2.0109 -3.4721 7.9553 38 1 1.0763 -1.5320 3.8724 39 1 0.9184 -0.1883 1.8209 40 1 1.8178 1.5371 -2.1248 41 1 3.8527 3.2097 -0.4819 42 1 4.0445 2.5614 -2.1698 43 1 5.6891 4.5290 -3.7200 44 1 0.3988 3.5019 -1.7569 45 1 1.2266 3.8872 -0.1844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957124765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:40 Heat of formation + Delta-G solvation = 202.178079 kcal Electronic energy + Delta-G solvation = -29085.350431 eV Core-core repulsion = 25109.497937 eV Total energy + Delta-G solvation = -3975.852494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59209 -40.84809 -39.07728 -36.88782 -35.98376 -34.58664 -32.25142 -31.71488 -31.06246 -30.31221 -30.11026 -27.40045 -25.28660 -24.69420 -24.04525 -23.43334 -23.27605 -21.89295 -21.60963 -20.37246 -19.05401 -18.86727 -17.14567 -16.64535 -16.26961 -16.21676 -15.75778 -15.51060 -15.22944 -15.11312 -14.69242 -14.64005 -14.38505 -13.96580 -13.66706 -13.51889 -13.24679 -12.93214 -12.63919 -12.47369 -12.35483 -12.26914 -11.74625 -11.62438 -11.61041 -11.43763 -11.36488 -11.28905 -10.98864 -10.83210 -10.59895 -10.12736 -9.94314 -9.84344 -9.54960 -9.44367 -9.37807 -8.78952 -8.64597 -8.18104 -6.75477 -5.69861 -3.02134 -0.03558 0.85538 1.29733 1.69584 2.12811 2.79651 3.09476 3.43130 3.48049 3.49710 3.51088 3.94249 4.01781 4.33151 4.35350 4.49423 4.53520 4.59633 4.70758 4.80640 4.87390 5.00263 5.07430 5.15677 5.22889 5.29452 5.48096 5.50041 5.54411 5.58051 5.63033 5.66325 5.70593 5.83653 5.86883 5.98811 6.06992 6.11078 6.34395 6.46131 6.57681 6.60377 6.91959 7.34478 7.56272 7.60799 7.68804 7.70560 8.04885 8.41940 9.10422 9.77132 10.67594 11.46028 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.002313 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.836118 B =12104.968417 C =12907.764765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.069 3.931 3 N -0.593 5.593 4 C 0.547 3.453 5 O -0.502 6.502 6 C -0.115 4.115 7 C -0.041 4.041 8 C -0.113 4.113 9 C 0.149 3.851 10 N -0.316 5.316 11 C 0.022 3.978 12 C -0.074 4.074 13 N -0.233 5.233 14 N -0.061 5.061 15 C -0.135 4.135 16 C -0.098 4.098 17 C 0.091 3.909 18 C 0.148 3.852 19 N -0.603 5.603 20 C -0.215 4.215 21 H 0.079 0.921 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.197 0.803 37 H 0.191 0.809 38 H 0.137 0.863 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.252 0.748 44 H 0.036 0.964 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 -19.474 15.476 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.054 4.054 3 N -0.326 5.326 4 C 0.335 3.665 5 O -0.377 6.377 6 C -0.119 4.119 7 C -0.061 4.061 8 C -0.133 4.133 9 C 0.056 3.944 10 N -0.097 5.097 11 C -0.128 4.128 12 C -0.229 4.229 13 N -0.103 5.103 14 N -0.038 5.038 15 C -0.156 4.156 16 C -0.116 4.116 17 C -0.012 4.012 18 C 0.023 3.977 19 N -0.329 5.329 20 C -0.343 4.343 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.213 0.787 37 H 0.208 0.792 38 H 0.155 0.845 39 H 0.189 0.811 40 H 0.123 0.877 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.504 -17.784 15.831 25.282 hybrid contribution -0.707 0.111 -0.955 1.193 sum -9.211 -17.672 14.876 24.869 Atomic orbital electron populations 1.22311 0.95877 1.02287 1.03338 1.22422 0.94438 0.84083 1.04480 1.48038 1.63168 1.13345 1.08015 1.18112 0.78447 0.87170 0.82815 1.90896 1.47468 1.14790 1.84578 1.20339 0.98327 0.96883 0.96354 1.21240 0.96287 0.97929 0.90601 1.20908 0.99375 0.94025 0.98958 1.17776 0.98953 0.93478 0.84180 1.48060 1.25506 1.21124 1.15052 1.23593 0.99432 0.90789 0.98971 1.23281 0.99181 1.04450 0.95956 1.74364 1.13055 1.01924 1.20919 1.82173 1.11684 1.18717 0.91271 1.20808 0.99157 1.02315 0.93360 1.22280 0.99478 0.93057 0.96807 1.24131 1.02207 0.91320 0.83504 1.22811 0.91764 0.85485 0.97690 1.45609 1.05806 1.30541 1.50958 1.18990 0.97966 1.00160 1.17195 0.90362 1.24775 0.96419 0.98739 1.00699 1.69825 1.05190 1.34117 1.47531 0.86097 0.77701 0.82575 0.79393 1.21692 1.21746 1.20592 1.22963 0.91954 0.90351 0.96208 0.91996 0.91113 0.91331 0.90284 0.88135 0.83340 0.83663 0.78650 0.79242 0.84524 0.81124 0.87670 0.93353 0.90622 0.93774 0.94599 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.15 37.16 0.34 -1.03 16 2 C 0.07 0.65 5.58 -4.04 -0.02 0.63 16 3 N -0.59 -8.70 2.74 -169.07 -0.46 -9.16 16 4 C 0.55 8.81 6.86 -12.40 -0.09 8.73 16 5 O -0.50 -10.50 12.45 5.30 0.07 -10.43 16 6 C -0.11 -1.39 5.59 -104.95 -0.59 -1.98 16 7 C -0.04 -0.48 9.59 -39.22 -0.38 -0.86 16 8 C -0.11 -1.18 9.66 -39.47 -0.38 -1.56 16 9 C 0.15 1.40 6.70 -83.57 -0.56 0.84 16 10 N -0.32 -3.03 3.85 -10.50 -0.04 -3.07 16 11 C 0.02 0.14 10.92 -16.72 -0.18 -0.04 16 12 C -0.07 -0.53 11.86 -18.05 -0.21 -0.75 16 13 N -0.23 -2.63 12.33 30.09 0.37 -2.26 16 14 N -0.06 -0.73 13.15 60.35 0.79 0.06 16 15 C -0.14 -0.97 9.46 -39.47 -0.37 -1.35 16 16 C -0.10 -0.84 7.47 -39.22 -0.29 -1.13 16 17 C 0.09 1.71 4.58 -70.15 -0.32 1.39 16 18 C 0.15 3.65 6.99 -2.84 -0.02 3.63 16 19 N -0.60 -16.20 3.70 -177.87 -0.66 -16.86 16 20 C -0.22 -6.27 10.69 -15.06 -0.16 -6.43 16 21 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.92 -27.93 11.29 55.49 0.63 -27.31 16 24 Si 0.91 22.75 29.56 -169.99 -5.02 17.73 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 28 C 0.11 2.43 8.27 -2.97 -0.02 2.41 16 29 H 0.06 0.47 7.10 -51.93 -0.37 0.11 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.10 0.78 3.95 -52.36 -0.21 0.57 16 34 H 0.15 1.82 7.92 -52.49 -0.42 1.40 16 35 H 0.15 1.47 7.72 -52.48 -0.41 1.06 16 36 H 0.20 0.33 7.16 -52.49 -0.38 -0.04 16 37 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.14 0.49 6.82 -52.49 -0.36 0.14 16 39 H 0.17 1.16 2.65 -52.49 -0.14 1.02 16 40 H 0.11 1.82 8.07 -51.93 -0.42 1.40 16 41 H 0.05 1.28 5.76 -51.93 -0.30 0.99 16 42 H 0.08 2.04 6.87 -51.93 -0.36 1.68 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 1.18 6.26 -51.93 -0.32 0.85 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -37.27 366.30 -7.49 -44.76 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.33 Total: -1.09 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.36 Total: 2.11 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.63 Total: -58.60 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.27 -7.49 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957124765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.940 kcal (2) G-P(sol) polarization free energy of solvation -37.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds