Wall clock time and date at job start Wed Apr 1 2020 00:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46838 * 2 1 4 4 C 1.34775 * 119.99640 * 99.16044 * 3 2 1 5 5 O 1.21576 * 119.99846 * 186.77075 * 4 3 2 6 6 C 1.47689 * 120.00437 * 6.77680 * 4 3 2 7 7 C 1.39696 * 120.07891 * 149.70386 * 6 4 3 8 8 C 1.37736 * 119.91874 * 179.97438 * 7 6 4 9 9 C 1.39029 * 120.07904 * 0.02562 * 8 7 6 10 10 N 1.39938 * 119.92068 * 179.97438 * 9 8 7 11 11 C 1.36316 * 126.86824 * 179.97438 * 10 9 8 12 12 C 1.34963 * 106.77855 * 179.97438 * 11 10 9 13 13 N 1.33371 * 109.01650 * 359.97438 * 12 11 10 14 14 N 1.28760 * 109.92943 * 0.02562 * 13 12 11 15 15 C 1.39026 * 120.16290 * 0.27111 * 9 8 7 16 16 C 1.37750 * 120.07399 * 359.45130 * 15 9 8 17 17 C 1.46494 * 120.00025 * 279.16188 * 3 2 1 18 18 C 1.53943 * 113.74054 * 222.66158 * 17 3 2 19 19 N 1.47811 * 86.03957 * 222.08496 * 18 17 3 20 20 C 1.36935 * 134.45878 * 204.64926 * 19 18 17 21 21 H 1.08007 * 119.99912 * 184.82947 * 20 19 18 22 22 C 1.38812 * 120.00022 * 4.82791 * 20 19 18 23 23 N 1.31620 * 119.99932 * 5.05300 * 22 20 19 24 24 Si 1.86802 * 120.00009 * 185.05166 * 22 20 19 25 25 H 1.48507 * 109.46851 * 94.99664 * 24 22 20 26 26 H 1.48494 * 109.47177 * 214.99686 * 24 22 20 27 27 H 1.48503 * 109.47094 * 335.00330 * 24 22 20 28 28 C 1.47586 * 91.04703 * 24.54846 * 19 18 17 29 29 H 1.08999 * 109.47598 * 299.99878 * 1 2 3 30 30 H 1.09000 * 109.47415 * 60.00381 * 1 2 3 31 31 H 1.09003 * 109.46682 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47598 * 240.00122 * 2 1 3 33 33 H 1.09000 * 109.47415 * 119.99619 * 2 1 3 34 34 H 1.08002 * 120.04192 * 359.96387 * 7 6 4 35 35 H 1.08005 * 119.96168 * 180.02562 * 8 7 6 36 36 H 1.07996 * 126.60437 * 359.70437 * 11 10 9 37 37 H 1.07996 * 125.49074 * 179.97438 * 12 11 10 38 38 H 1.07991 * 119.96280 * 179.70316 * 15 9 8 39 39 H 1.07998 * 120.03719 * 180.27832 * 16 15 9 40 40 H 1.09003 * 112.94663 * 354.25346 * 17 3 2 41 41 H 1.09001 * 113.77253 * 336.35416 * 18 17 3 42 42 H 1.09007 * 113.77122 * 107.74724 * 18 17 3 43 43 H 0.97002 * 119.99296 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.76982 * 221.14952 * 28 19 18 45 45 H 1.09001 * 113.76562 * 89.75637 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4180 1.9546 1.1523 5 8 2.7061 3.1356 1.1758 6 6 2.5063 1.1485 2.3866 7 6 3.4486 1.4694 3.3666 8 6 3.5277 0.7156 4.5167 9 6 2.6715 -0.3638 4.7026 10 7 2.7551 -1.1277 5.8721 11 6 1.9912 -2.2082 6.1996 12 6 2.4128 -2.6310 7.4100 13 7 3.4057 -1.8426 7.8240 14 7 3.6427 -0.9352 6.9418 15 6 1.7366 -0.6900 3.7267 16 6 1.6479 0.0629 2.5766 17 6 2.0719 2.1392 -1.2525 18 6 3.3604 2.9643 -1.4229 19 7 2.4830 4.0384 -1.9341 20 6 2.6653 5.1121 -2.7642 21 1 1.8590 5.8120 -2.9268 22 6 3.8865 5.3009 -3.3967 23 7 4.8357 4.3968 -3.2783 24 14 4.1826 6.8382 -4.4158 25 1 4.8582 7.8634 -3.5803 26 1 5.0423 6.5028 -5.5792 27 1 2.8828 7.3706 -4.8978 28 6 1.3316 3.4876 -1.1931 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.1145 2.3075 3.2226 35 1 4.2558 0.9634 5.2751 36 1 1.1983 -2.6398 5.6068 37 1 2.0109 -3.4721 7.9553 38 1 1.0763 -1.5320 3.8724 39 1 0.9184 -0.1883 1.8209 40 1 1.8178 1.5371 -2.1248 41 1 3.8527 3.2097 -0.4819 42 1 4.0445 2.5614 -2.1698 43 1 5.6891 4.5290 -3.7200 44 1 0.3988 3.5019 -1.7569 45 1 1.2266 3.8872 -0.1844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957124765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:39 Heat of formation + Delta-G solvation = 176.250546 kcal Electronic energy + Delta-G solvation = -29086.474733 eV Core-core repulsion = 25109.497937 eV Total energy + Delta-G solvation = -3976.976796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.22140 -41.98257 -40.16118 -38.46435 -37.08842 -35.43676 -34.18767 -32.62136 -31.76304 -31.26889 -30.96205 -29.24804 -26.57795 -26.33807 -25.10927 -24.48535 -24.21807 -22.74811 -22.37888 -21.74852 -20.26669 -19.62932 -18.79447 -18.15908 -17.33734 -16.95490 -16.89728 -16.50151 -16.38276 -16.29037 -16.01482 -15.67873 -15.43297 -15.10344 -14.80647 -14.52271 -14.21484 -14.05990 -14.00031 -13.69500 -13.50708 -13.31466 -12.96422 -12.92127 -12.84054 -12.69217 -12.46125 -12.34086 -12.26186 -12.03854 -12.00583 -11.88548 -11.66292 -11.50692 -11.02361 -10.59933 -10.41798 -10.15908 -9.63934 -9.47093 -8.88558 -7.91054 -5.26088 -0.78143 0.12393 0.57115 1.08600 1.41503 1.45321 1.53851 1.56786 1.73217 1.93554 2.47233 2.60166 3.25332 3.28437 3.41859 3.50570 3.55776 3.71121 3.81336 3.88607 3.98202 4.11821 4.15719 4.24063 4.27092 4.37781 4.40028 4.49016 4.58459 4.63742 4.79286 4.82033 4.86275 4.95332 4.99342 5.03968 5.07818 5.15349 5.23928 5.25589 5.29852 5.38835 5.48689 5.50089 5.80956 5.86154 5.92380 6.47346 6.89295 7.07876 7.19415 7.58414 8.55894 9.24519 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.002313 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.836118 B =12104.968417 C =12907.764765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 N -0.590 5.590 4 C 0.542 3.458 5 O -0.566 6.566 6 C -0.133 4.133 7 C -0.056 4.056 8 C -0.122 4.122 9 C 0.150 3.850 10 N -0.325 5.325 11 C 0.044 3.956 12 C -0.081 4.081 13 N -0.266 5.266 14 N -0.117 5.117 15 C -0.110 4.110 16 C -0.081 4.081 17 C 0.130 3.870 18 C 0.144 3.856 19 N -0.634 5.634 20 C -0.233 4.233 21 H 0.081 0.919 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.982 3.018 25 H -0.293 1.293 26 H -0.289 1.289 27 H -0.263 1.263 28 C 0.114 3.886 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.253 0.747 37 H 0.225 0.775 38 H 0.193 0.807 39 H 0.198 0.802 40 H 0.130 0.870 41 H 0.020 0.980 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.057 0.943 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 -23.295 15.683 31.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.061 4.061 3 N -0.321 5.321 4 C 0.332 3.668 5 O -0.445 6.445 6 C -0.137 4.137 7 C -0.076 4.076 8 C -0.142 4.142 9 C 0.057 3.943 10 N -0.107 5.107 11 C -0.105 4.105 12 C -0.237 4.237 13 N -0.134 5.134 14 N -0.094 5.094 15 C -0.130 4.130 16 C -0.099 4.099 17 C 0.026 3.974 18 C 0.018 3.982 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.221 1.221 26 H -0.215 1.215 27 H -0.187 1.187 28 C -0.012 4.012 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.269 0.731 37 H 0.242 0.758 38 H 0.210 0.790 39 H 0.214 0.786 40 H 0.147 0.853 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.136 -21.655 16.073 29.573 hybrid contribution 0.351 1.163 -0.865 1.491 sum -11.785 -20.492 15.208 28.109 Atomic orbital electron populations 1.22314 0.93664 1.04726 1.02783 1.22879 0.96144 0.80703 1.06367 1.48011 1.62871 1.15207 1.06025 1.18785 0.77002 0.86790 0.84215 1.90862 1.50115 1.17776 1.85766 1.20040 1.00471 0.98549 0.94676 1.21044 0.96830 0.98056 0.91630 1.20804 1.00204 0.94992 0.98224 1.17976 0.98762 0.92798 0.84765 1.48173 1.25885 1.22023 1.14597 1.24576 0.98771 0.88522 0.98666 1.24044 0.98104 1.04765 0.96766 1.74335 1.14738 1.02750 1.21575 1.82191 1.14042 1.20386 0.92759 1.21294 0.98020 1.02625 0.91104 1.22484 0.98357 0.91209 0.97852 1.23376 0.96914 0.90962 0.86163 1.22630 0.93577 0.86780 0.95216 1.46045 1.08171 1.30635 1.51168 1.19407 0.98312 1.01120 1.17337 0.90085 1.25690 0.96253 1.01933 1.02413 1.70033 1.05360 1.35906 1.48720 0.85014 0.78039 0.78501 0.77509 1.22068 1.21490 1.18734 1.23009 0.91661 0.91565 0.94954 0.91775 0.92591 0.87292 0.89051 0.85759 0.85803 0.84539 0.73129 0.75804 0.79018 0.78562 0.85272 0.96225 0.93658 0.94300 0.92527 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.15 71.98 0.66 -1.16 16 2 C 0.06 0.91 5.58 86.38 0.48 1.39 16 3 N -0.59 -16.85 2.74 -807.08 -2.21 -19.06 16 4 C 0.54 17.99 6.86 86.74 0.60 18.59 16 5 O -0.57 -25.57 12.45 -3.96 -0.05 -25.62 16 6 C -0.13 -3.18 5.59 -20.08 -0.11 -3.30 16 7 C -0.06 -1.41 9.59 22.50 0.22 -1.20 16 8 C -0.12 -2.63 9.66 22.34 0.22 -2.41 16 9 C 0.15 2.42 6.70 38.23 0.26 2.68 16 10 N -0.32 -5.34 3.85 -187.12 -0.72 -6.06 16 11 C 0.04 0.33 10.92 83.24 0.91 1.24 16 12 C -0.08 -0.89 11.86 83.71 0.99 0.10 16 13 N -0.27 -5.73 12.33 -58.72 -0.72 -6.46 16 14 N -0.12 -2.80 13.15 37.02 0.49 -2.32 16 15 C -0.11 -0.98 9.46 22.34 0.21 -0.77 16 16 C -0.08 -1.05 7.47 22.50 0.17 -0.89 16 17 C 0.13 4.91 4.58 46.75 0.21 5.12 16 18 C 0.14 7.50 6.99 86.44 0.60 8.10 16 19 N -0.63 -35.38 3.70 -716.65 -2.65 -38.03 16 20 C -0.23 -14.01 10.69 84.03 0.90 -13.11 16 21 H 0.08 4.65 7.83 -2.91 -0.02 4.63 16 22 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 23 N -0.95 -60.34 11.29 21.65 0.24 -60.09 16 24 Si 0.98 47.99 29.56 68.60 2.03 50.02 16 25 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 28 C 0.11 5.04 8.27 86.48 0.72 5.76 16 29 H 0.06 0.67 7.10 -2.39 -0.02 0.65 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.13 1.33 3.95 -2.80 -0.01 1.32 16 34 H 0.12 3.60 7.92 -2.91 -0.02 3.57 16 35 H 0.14 3.08 7.72 -2.91 -0.02 3.05 16 36 H 0.25 -1.29 7.16 -2.91 -0.02 -1.31 16 37 H 0.23 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.19 -0.37 6.82 -2.92 -0.02 -0.39 16 39 H 0.20 1.54 2.65 -2.91 -0.01 1.53 16 40 H 0.13 4.28 8.07 -2.39 -0.02 4.26 16 41 H 0.02 1.15 5.76 -2.39 -0.01 1.13 16 42 H 0.05 2.59 6.87 -2.38 -0.02 2.58 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.04 1.76 6.26 -2.39 -0.01 1.75 16 Total: -1.00 -92.03 366.30 4.93 -87.10 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.04 Total: 4.13 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 7.49 Total: 16.40 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -5.58 Total: -132.02 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -92.03 4.93 -87.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957124765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 263.349 kcal (2) G-P(sol) polarization free energy of solvation -92.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds