Wall clock time and date at job start Wed Apr 1 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47478 * 2 1 4 4 C 1.34777 * 119.99548 * 274.93849 * 3 2 1 5 5 O 1.21541 * 120.00032 * 184.78962 * 4 3 2 6 6 C 1.47977 * 120.00245 * 4.79065 * 4 3 2 7 7 C 1.39446 * 119.65098 * 185.87974 * 6 4 3 8 8 C 1.38347 * 119.13680 * 179.97438 * 7 6 4 9 9 C 1.39290 * 118.43731 * 0.02562 * 8 7 6 10 10 N 1.39869 * 120.38958 * 180.02562 * 9 8 7 11 11 C 1.37160 * 126.48270 * 180.02562 * 10 9 8 12 12 C 1.34631 * 106.82842 * 179.97438 * 11 10 9 13 13 N 1.34153 * 108.21433 * 359.97438 * 12 11 10 14 14 C 1.30489 * 109.36451 * 359.72751 * 13 12 11 15 15 C 1.39268 * 119.21931 * 359.97438 * 9 8 7 16 16 N 1.31387 * 120.80240 * 359.73985 * 15 9 8 17 17 C 1.46493 * 120.00331 * 94.93739 * 3 2 1 18 18 C 1.53496 * 114.20904 * 232.55298 * 17 3 2 19 19 N 1.47056 * 87.98863 * 220.14699 * 18 17 3 20 20 C 1.36940 * 136.05899 * 207.08173 * 19 18 17 21 21 H 1.07993 * 119.99737 * 5.11291 * 20 19 18 22 22 C 1.38819 * 119.99846 * 185.10474 * 20 19 18 23 23 N 1.31615 * 119.99959 * 5.10036 * 22 20 19 24 24 Si 1.86798 * 119.99561 * 185.09038 * 22 20 19 25 25 H 1.48500 * 109.47449 * 265.00245 * 24 22 20 26 26 H 1.48501 * 109.47489 * 25.00937 * 24 22 20 27 27 H 1.48507 * 109.46717 * 145.00664 * 24 22 20 28 28 C 1.47070 * 87.88810 * 27.34398 * 19 18 17 29 29 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47097 * 300.00670 * 1 2 3 31 31 H 1.09005 * 109.46678 * 60.00269 * 1 2 3 32 32 H 1.08998 * 109.47097 * 239.99329 * 2 1 3 33 33 H 1.09006 * 109.47056 * 120.00117 * 2 1 3 34 34 H 1.08002 * 120.43273 * 359.95805 * 7 6 4 35 35 H 1.08001 * 120.78041 * 180.02562 * 8 7 6 36 36 H 1.07996 * 126.58670 * 359.97438 * 11 10 9 37 37 H 1.07995 * 125.88940 * 180.02562 * 12 11 10 38 38 H 1.08004 * 125.72047 * 180.27030 * 14 13 12 39 39 H 1.08001 * 119.60287 * 180.02562 * 15 9 8 40 40 H 1.09000 * 113.28301 * 5.62142 * 17 3 2 41 41 H 1.09006 * 113.46285 * 105.36654 * 18 17 3 42 42 H 1.09002 * 113.46409 * 334.93340 * 18 17 3 43 43 H 0.97004 * 119.99789 * 179.97438 * 23 22 20 44 44 H 1.08999 * 113.46724 * 87.42954 * 28 19 18 45 45 H 1.08995 * 113.46963 * 217.88172 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1483 2.0499 -1.1629 5 8 2.6349 3.1637 -1.1724 6 6 1.6986 1.4283 -2.4282 7 6 1.9474 2.0722 -3.6398 8 6 1.5227 1.4811 -4.8164 9 6 0.8588 0.2589 -4.7427 10 7 0.4123 -0.3751 -5.9068 11 6 -0.2514 -1.5732 -5.9796 12 6 -0.4911 -1.8074 -7.2835 13 7 0.0093 -0.7842 -7.9922 14 6 0.5474 0.0830 -7.1792 15 6 0.6458 -0.3251 -3.4964 16 7 1.0672 0.2604 -2.3983 17 6 2.3656 2.0354 1.2639 18 6 1.6820 3.3929 1.4786 19 7 2.9496 3.8843 2.0391 20 6 3.3225 4.8467 2.9390 21 1 2.5698 5.4014 3.4793 22 6 4.6682 5.1092 3.1569 23 7 5.5828 4.5057 2.4278 24 14 5.1806 6.3190 4.4846 25 1 5.3809 7.6610 3.8810 26 1 4.1197 6.3957 5.5208 27 1 6.4489 5.8623 5.1077 28 6 3.6413 2.8917 1.2028 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.4647 3.0200 -3.6595 35 1 1.7018 1.9563 -5.7696 36 1 -0.5285 -2.2070 -5.1502 37 1 -0.9993 -2.6698 -7.6888 38 1 1.0235 1.0082 -7.4690 39 1 0.1321 -1.2729 -3.4321 40 1 2.3125 1.3674 2.1236 41 1 0.8700 3.3599 2.2051 42 1 1.3974 3.8872 0.5497 43 1 6.5231 4.6894 2.5798 44 1 3.8731 3.2540 0.2012 45 1 4.4985 2.4317 1.6943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957130605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:09 Heat of formation + Delta-G solvation = 174.826467 kcal Electronic energy + Delta-G solvation = -29217.221264 eV Core-core repulsion = 25240.182715 eV Total energy + Delta-G solvation = -3977.038549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.83565 -41.03737 -39.55337 -37.01169 -35.73050 -34.76455 -32.77705 -32.08201 -30.45124 -29.99379 -29.91351 -27.41906 -25.37020 -24.50154 -24.44568 -23.37898 -23.18386 -21.67185 -21.35694 -20.45094 -19.25232 -19.04751 -17.16706 -16.85286 -16.55673 -16.10175 -15.69681 -15.45594 -15.22513 -15.08943 -14.70393 -14.53124 -14.26307 -14.15273 -13.99939 -13.82675 -13.69005 -13.20787 -12.84202 -12.72731 -12.39373 -12.22181 -11.66986 -11.63618 -11.40744 -11.24187 -10.89966 -10.86108 -10.70939 -10.62761 -10.16895 -10.09080 -10.01752 -9.95284 -9.33859 -9.30879 -9.23504 -8.86636 -8.58337 -8.04949 -6.74475 -5.70468 -3.00440 -0.05419 0.66279 1.65458 2.07624 2.63234 2.75563 3.09810 3.43135 3.47568 3.49954 3.58299 3.77715 3.98321 4.04669 4.15739 4.32410 4.39831 4.54486 4.71396 4.91191 5.05127 5.19377 5.22232 5.26778 5.36159 5.38972 5.47983 5.58535 5.62984 5.69841 5.74461 5.83056 5.90533 5.96192 6.10269 6.19436 6.38725 6.44644 6.55676 6.63709 6.66733 6.94677 7.23027 7.30294 7.48842 7.59179 7.65804 7.80821 8.03722 8.43043 9.10744 9.76882 10.73365 11.48105 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.002294 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.903245 B =12203.671244 C =12875.940469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.577 5.577 4 C 0.558 3.442 5 O -0.502 6.502 6 C 0.080 3.920 7 C -0.081 4.081 8 C -0.097 4.097 9 C 0.096 3.904 10 N -0.409 5.409 11 C -0.052 4.052 12 C -0.020 4.020 13 N -0.483 5.483 14 C 0.191 3.809 15 C 0.084 3.916 16 N -0.416 5.416 17 C 0.080 3.920 18 C 0.112 3.888 19 N -0.603 5.603 20 C -0.214 4.214 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.280 1.280 27 H -0.290 1.290 28 C 0.146 3.854 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.182 0.818 37 H 0.176 0.824 38 H 0.210 0.790 39 H 0.167 0.833 40 H 0.110 0.890 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.253 0.747 44 H 0.071 0.929 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 -15.570 -16.508 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.308 5.308 4 C 0.343 3.657 5 O -0.377 6.377 6 C -0.058 4.058 7 C -0.102 4.102 8 C -0.124 4.124 9 C 0.000 4.000 10 N -0.088 5.088 11 C -0.182 4.182 12 C -0.166 4.166 13 N -0.200 5.200 14 C -0.090 4.090 15 C -0.078 4.078 16 N -0.127 5.127 17 C -0.024 4.024 18 C -0.015 4.015 19 N -0.328 5.328 20 C -0.341 4.341 21 H 0.099 0.901 22 C -0.206 4.206 23 N -0.563 5.563 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.206 1.206 27 H -0.217 1.217 28 C 0.020 3.980 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.180 0.820 35 H 0.167 0.833 36 H 0.199 0.801 37 H 0.194 0.806 38 H 0.227 0.773 39 H 0.184 0.816 40 H 0.128 0.872 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.944 -15.053 -16.243 25.162 hybrid contribution 0.385 0.882 0.618 1.143 sum -11.559 -14.172 -15.625 24.054 Atomic orbital electron populations 1.22084 0.96053 1.01297 1.01664 1.21819 0.94691 0.82061 1.02713 1.47875 1.62850 1.14000 1.06082 1.17737 0.79945 0.85503 0.82495 1.90872 1.42666 1.18697 1.85446 1.21641 0.97418 0.91678 0.95059 1.22093 0.96565 1.01112 0.90405 1.21297 0.97610 0.93227 1.00305 1.19101 0.99566 0.94665 0.86637 1.43140 1.42249 1.17351 1.06108 1.22860 1.04532 0.89968 1.00815 1.22421 1.04761 0.99713 0.89675 1.70360 1.13743 1.03067 1.32833 1.25393 1.03823 1.01559 0.78187 1.22745 0.99004 1.00472 0.85550 1.68413 1.07522 1.08344 1.28429 1.23982 1.01608 0.93231 0.83579 1.22699 0.91231 0.91220 0.96394 1.45342 1.01681 1.40405 1.45398 1.18907 0.91288 1.11626 1.12326 0.90137 1.24830 0.95657 1.00247 0.99820 1.69873 0.99819 1.45751 1.40895 0.86096 0.77908 0.80598 0.81135 1.21662 1.20554 1.21657 1.22734 0.92125 0.86766 0.96420 0.92439 0.93307 0.92063 0.88709 0.91370 0.82047 0.83268 0.80114 0.80642 0.77307 0.81646 0.87226 0.94746 0.93959 0.93738 0.91148 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.50 37.16 0.35 -1.24 16 2 C 0.11 1.31 5.71 -4.04 -0.02 1.28 16 3 N -0.58 -9.20 2.77 -166.79 -0.46 -9.66 16 4 C 0.56 9.29 7.08 -12.27 -0.09 9.20 16 5 O -0.50 -10.42 11.90 5.33 0.06 -10.35 16 6 C 0.08 1.00 6.51 -83.01 -0.54 0.46 16 7 C -0.08 -0.83 9.62 -39.09 -0.38 -1.21 16 8 C -0.10 -0.74 9.57 -39.15 -0.37 -1.12 16 9 C 0.10 0.75 6.66 -83.42 -0.56 0.19 16 10 N -0.41 -3.08 2.98 -61.93 -0.18 -3.27 16 11 C -0.05 -0.34 10.86 -16.44 -0.18 -0.52 16 12 C -0.02 -0.16 11.85 -17.81 -0.21 -0.37 16 13 N -0.48 -4.74 11.24 -14.46 -0.16 -4.90 16 14 C 0.19 1.50 11.93 -89.59 -1.07 0.43 16 15 C 0.08 0.65 10.64 -17.36 -0.18 0.47 16 16 N -0.42 -4.23 3.92 -9.66 -0.04 -4.27 16 17 C 0.08 1.55 4.80 -67.68 -0.32 1.22 16 18 C 0.11 2.49 8.10 -8.51 -0.07 2.42 16 19 N -0.60 -16.41 3.77 -184.62 -0.70 -17.11 16 20 C -0.21 -6.26 10.74 -15.06 -0.16 -6.42 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -28.33 11.72 55.49 0.65 -27.68 16 24 Si 0.91 22.71 29.56 -169.99 -5.02 17.69 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.15 3.65 6.61 -8.36 -0.06 3.60 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.69 6.24 -51.93 -0.32 0.36 16 32 H 0.10 1.05 5.65 -51.93 -0.29 0.76 16 33 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 34 H 0.16 1.69 7.65 -52.49 -0.40 1.28 16 35 H 0.15 0.70 6.88 -52.49 -0.36 0.34 16 36 H 0.18 0.61 7.16 -52.49 -0.38 0.23 16 37 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.21 0.95 7.12 -52.48 -0.37 0.58 16 39 H 0.17 0.81 6.82 -52.49 -0.36 0.45 16 40 H 0.11 1.97 7.93 -51.93 -0.41 1.56 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.99 6.48 -51.93 -0.34 0.66 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.07 1.91 5.21 -51.93 -0.27 1.64 16 45 H 0.05 1.49 7.47 -51.93 -0.39 1.11 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -36.79 366.01 -9.83 -46.63 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.54 Total: -0.65 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -3.95 Total: 8.05 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -0.89 Total: -66.88 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.06 Total: -10.35 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.79 -9.83 -46.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957130605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.452 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds