Wall clock time and date at job start Wed Apr 1 2020 00:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47478 * 2 1 4 4 C 1.34777 * 119.99548 * 274.93849 * 3 2 1 5 5 O 1.21541 * 120.00032 * 184.78962 * 4 3 2 6 6 C 1.47977 * 120.00245 * 4.79065 * 4 3 2 7 7 C 1.39446 * 119.65098 * 185.87974 * 6 4 3 8 8 C 1.38347 * 119.13680 * 179.97438 * 7 6 4 9 9 C 1.39290 * 118.43731 * 0.02562 * 8 7 6 10 10 N 1.39869 * 120.38958 * 180.02562 * 9 8 7 11 11 C 1.37160 * 126.48270 * 180.02562 * 10 9 8 12 12 C 1.34631 * 106.82842 * 179.97438 * 11 10 9 13 13 N 1.34153 * 108.21433 * 359.97438 * 12 11 10 14 14 C 1.30489 * 109.36451 * 359.72751 * 13 12 11 15 15 C 1.39268 * 119.21931 * 359.97438 * 9 8 7 16 16 N 1.31387 * 120.80240 * 359.73985 * 15 9 8 17 17 C 1.46493 * 120.00331 * 94.93739 * 3 2 1 18 18 C 1.53496 * 114.20904 * 232.55298 * 17 3 2 19 19 N 1.47056 * 87.98863 * 220.14699 * 18 17 3 20 20 C 1.36940 * 136.05899 * 207.08173 * 19 18 17 21 21 H 1.07993 * 119.99737 * 5.11291 * 20 19 18 22 22 C 1.38819 * 119.99846 * 185.10474 * 20 19 18 23 23 N 1.31615 * 119.99959 * 5.10036 * 22 20 19 24 24 Si 1.86798 * 119.99561 * 185.09038 * 22 20 19 25 25 H 1.48500 * 109.47449 * 265.00245 * 24 22 20 26 26 H 1.48501 * 109.47489 * 25.00937 * 24 22 20 27 27 H 1.48507 * 109.46717 * 145.00664 * 24 22 20 28 28 C 1.47070 * 87.88810 * 27.34398 * 19 18 17 29 29 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47097 * 300.00670 * 1 2 3 31 31 H 1.09005 * 109.46678 * 60.00269 * 1 2 3 32 32 H 1.08998 * 109.47097 * 239.99329 * 2 1 3 33 33 H 1.09006 * 109.47056 * 120.00117 * 2 1 3 34 34 H 1.08002 * 120.43273 * 359.95805 * 7 6 4 35 35 H 1.08001 * 120.78041 * 180.02562 * 8 7 6 36 36 H 1.07996 * 126.58670 * 359.97438 * 11 10 9 37 37 H 1.07995 * 125.88940 * 180.02562 * 12 11 10 38 38 H 1.08004 * 125.72047 * 180.27030 * 14 13 12 39 39 H 1.08001 * 119.60287 * 180.02562 * 15 9 8 40 40 H 1.09000 * 113.28301 * 5.62142 * 17 3 2 41 41 H 1.09006 * 113.46285 * 105.36654 * 18 17 3 42 42 H 1.09002 * 113.46409 * 334.93340 * 18 17 3 43 43 H 0.97004 * 119.99789 * 179.97438 * 23 22 20 44 44 H 1.08999 * 113.46724 * 87.42954 * 28 19 18 45 45 H 1.08995 * 113.46963 * 217.88172 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1483 2.0499 -1.1629 5 8 2.6349 3.1637 -1.1724 6 6 1.6986 1.4283 -2.4282 7 6 1.9474 2.0722 -3.6398 8 6 1.5227 1.4811 -4.8164 9 6 0.8588 0.2589 -4.7427 10 7 0.4123 -0.3751 -5.9068 11 6 -0.2514 -1.5732 -5.9796 12 6 -0.4911 -1.8074 -7.2835 13 7 0.0093 -0.7842 -7.9922 14 6 0.5474 0.0830 -7.1792 15 6 0.6458 -0.3251 -3.4964 16 7 1.0672 0.2604 -2.3983 17 6 2.3656 2.0354 1.2639 18 6 1.6820 3.3929 1.4786 19 7 2.9496 3.8843 2.0391 20 6 3.3225 4.8467 2.9390 21 1 2.5698 5.4014 3.4793 22 6 4.6682 5.1092 3.1569 23 7 5.5828 4.5057 2.4278 24 14 5.1806 6.3190 4.4846 25 1 5.3809 7.6610 3.8810 26 1 4.1197 6.3957 5.5208 27 1 6.4489 5.8623 5.1077 28 6 3.6413 2.8917 1.2028 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.4647 3.0200 -3.6595 35 1 1.7018 1.9563 -5.7696 36 1 -0.5285 -2.2070 -5.1502 37 1 -0.9993 -2.6698 -7.6888 38 1 1.0235 1.0082 -7.4690 39 1 0.1321 -1.2729 -3.4321 40 1 2.3125 1.3674 2.1236 41 1 0.8700 3.3599 2.2051 42 1 1.3974 3.8872 0.5497 43 1 6.5231 4.6894 2.5798 44 1 3.8731 3.2540 0.2012 45 1 4.4985 2.4317 1.6943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957130605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:08 Heat of formation + Delta-G solvation = 152.454562 kcal Electronic energy + Delta-G solvation = -29218.191382 eV Core-core repulsion = 25240.182715 eV Total energy + Delta-G solvation = -3978.008667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.40103 -42.07102 -40.73726 -38.63795 -36.88013 -35.59111 -34.18309 -33.49480 -31.22501 -31.19666 -30.46796 -29.26157 -26.50482 -26.34792 -25.26199 -24.78709 -24.20653 -22.45959 -21.96034 -21.86662 -20.51924 -19.67135 -18.76432 -18.17822 -17.74708 -17.03667 -16.75717 -16.72146 -16.33926 -16.25123 -15.94927 -15.67184 -15.28252 -15.03796 -14.92831 -14.79603 -14.60302 -14.27772 -14.12486 -13.92424 -13.69495 -13.52294 -13.34645 -13.00037 -12.81910 -12.68673 -12.51064 -12.29363 -12.00822 -11.94247 -11.66501 -11.30888 -11.28218 -11.17785 -10.88158 -10.70928 -10.33680 -9.87118 -9.53525 -9.40078 -8.89435 -7.93071 -5.26174 -0.80941 0.00181 1.01465 1.43058 1.46570 1.49405 1.56123 1.75574 1.88825 2.10838 2.47931 2.67875 2.94756 3.28427 3.38024 3.40321 3.54046 3.59651 3.72898 3.79322 3.82951 3.99280 4.22396 4.28953 4.42768 4.49187 4.56871 4.61673 4.65976 4.72970 4.73953 4.81010 4.82005 4.93698 5.04958 5.11126 5.19817 5.21749 5.26945 5.38429 5.47523 5.62004 5.70634 5.87485 5.94510 6.09314 6.39602 6.56276 6.87923 6.95481 7.15976 7.56846 8.59969 9.26101 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.002294 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.903245 B =12203.671244 C =12875.940469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.107 3.893 3 N -0.578 5.578 4 C 0.553 3.447 5 O -0.557 6.557 6 C 0.057 3.943 7 C -0.086 4.086 8 C -0.088 4.088 9 C 0.109 3.891 10 N -0.412 5.412 11 C -0.046 4.046 12 C -0.042 4.042 13 N -0.520 5.520 14 C 0.184 3.816 15 C 0.091 3.909 16 N -0.416 5.416 17 C 0.118 3.882 18 C 0.115 3.885 19 N -0.633 5.633 20 C -0.231 4.231 21 H 0.087 0.913 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.987 3.013 25 H -0.289 1.289 26 H -0.262 1.262 27 H -0.291 1.291 28 C 0.144 3.856 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.179 0.821 36 H 0.216 0.784 37 H 0.193 0.807 38 H 0.234 0.766 39 H 0.203 0.797 40 H 0.132 0.868 41 H 0.054 0.946 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.045 0.955 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.395 -17.759 -17.032 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 N -0.309 5.309 4 C 0.340 3.660 5 O -0.435 6.435 6 C -0.080 4.080 7 C -0.108 4.108 8 C -0.115 4.115 9 C 0.013 3.987 10 N -0.093 5.093 11 C -0.175 4.175 12 C -0.186 4.186 13 N -0.237 5.237 14 C -0.097 4.097 15 C -0.071 4.071 16 N -0.128 5.128 17 C 0.013 3.987 18 C -0.012 4.012 19 N -0.359 5.359 20 C -0.359 4.359 21 H 0.105 0.895 22 C -0.264 4.264 23 N -0.603 5.603 24 Si 0.814 3.186 25 H -0.216 1.216 26 H -0.186 1.186 27 H -0.217 1.217 28 C 0.017 3.983 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.197 0.803 36 H 0.232 0.768 37 H 0.210 0.790 38 H 0.250 0.750 39 H 0.219 0.781 40 H 0.150 0.850 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -14.088 -17.299 -16.785 27.919 hybrid contribution 0.931 1.451 0.560 1.812 sum -13.158 -15.848 -16.226 26.222 Atomic orbital electron populations 1.22009 0.94497 1.02939 1.00750 1.22127 0.95868 0.79462 1.03967 1.47930 1.62765 1.15514 1.04651 1.18394 0.78715 0.84921 0.83921 1.90836 1.45023 1.21168 1.86475 1.20977 1.00278 0.93404 0.93318 1.22030 0.96990 1.00943 0.90820 1.21524 0.96414 0.93127 1.00408 1.19165 0.98345 0.94293 0.86909 1.43220 1.42484 1.17764 1.05798 1.23424 1.03088 0.89518 1.01453 1.22850 1.05291 1.00063 0.90377 1.70346 1.14925 1.04294 1.34168 1.25940 1.03498 1.02129 0.78156 1.23278 0.98013 1.01154 0.84685 1.68291 1.07440 1.07376 1.29644 1.23343 0.96721 0.92643 0.86021 1.22726 0.90285 0.92350 0.95802 1.45751 1.04124 1.40530 1.45520 1.19376 0.91839 1.12005 1.12695 0.89491 1.25798 0.95634 1.02522 1.02436 1.70092 0.99775 1.47573 1.42857 0.84944 0.77588 0.77685 0.78377 1.21565 1.18622 1.21688 1.22589 0.93507 0.87823 0.94334 0.89401 0.94450 0.92751 0.87455 0.90170 0.83211 0.80322 0.76756 0.79045 0.74962 0.78058 0.85048 0.92813 0.95367 0.94276 0.93708 0.96035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.50 71.98 0.68 -1.90 16 2 C 0.11 2.31 5.71 86.38 0.49 2.80 16 3 N -0.58 -18.42 2.77 -799.87 -2.21 -20.64 16 4 C 0.55 19.00 7.08 86.83 0.61 19.62 16 5 O -0.56 -24.74 11.90 -3.84 -0.05 -24.78 16 6 C 0.06 1.39 6.51 41.87 0.27 1.66 16 7 C -0.09 -1.76 9.62 22.59 0.22 -1.54 16 8 C -0.09 -1.14 9.57 22.55 0.22 -0.92 16 9 C 0.11 1.32 6.66 38.36 0.26 1.58 16 10 N -0.41 -4.78 2.98 -349.84 -1.04 -5.82 16 11 C -0.05 -0.43 10.86 83.03 0.90 0.47 16 12 C -0.04 -0.54 11.85 83.51 0.99 0.45 16 13 N -0.52 -9.19 11.24 -199.67 -2.25 -11.43 16 14 C 0.18 2.40 11.93 179.99 2.15 4.55 16 15 C 0.09 1.06 10.64 85.01 0.90 1.97 16 16 N -0.42 -7.44 3.92 -184.47 -0.72 -8.17 16 17 C 0.12 4.64 4.80 45.56 0.22 4.86 16 18 C 0.11 5.23 8.10 83.18 0.67 5.90 16 19 N -0.63 -35.78 3.77 -738.00 -2.78 -38.56 16 20 C -0.23 -13.89 10.74 84.03 0.90 -12.98 16 21 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 22 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 23 N -0.95 -61.56 11.72 21.65 0.25 -61.31 16 24 Si 0.99 47.73 29.56 68.60 2.03 49.75 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 28 C 0.14 7.62 6.61 83.27 0.55 8.17 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 1.07 6.24 -2.38 -0.01 1.06 16 32 H 0.11 2.10 5.65 -2.39 -0.01 2.09 16 33 H 0.08 1.55 7.90 -2.38 -0.02 1.53 16 34 H 0.15 3.35 7.65 -2.91 -0.02 3.32 16 35 H 0.18 1.16 6.88 -2.91 -0.02 1.14 16 36 H 0.22 0.30 7.16 -2.91 -0.02 0.27 16 37 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.23 1.47 7.12 -2.91 -0.02 1.45 16 39 H 0.20 0.82 6.82 -2.91 -0.02 0.80 16 40 H 0.13 4.62 7.93 -2.39 -0.02 4.60 16 41 H 0.05 2.21 8.14 -2.38 -0.02 2.20 16 42 H 0.03 1.39 6.48 -2.39 -0.02 1.37 16 43 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.05 2.64 5.21 -2.39 -0.01 2.62 16 45 H 0.02 1.24 7.47 -2.39 -0.02 1.23 16 Total: -1.00 -85.70 366.01 4.77 -80.93 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.03 Total: 9.16 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 10.51 Total: 30.86 kcal Atomic # 7 Polarization: -137.17 SS G_CDS: -8.75 Total: -145.92 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -85.70 4.77 -80.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957130605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.381 kcal (2) G-P(sol) polarization free energy of solvation -85.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds