Wall clock time and date at job start Wed Apr 1 2020 00:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34778 * 119.99505 * 272.63132 * 3 2 1 5 5 O 1.21562 * 119.99802 * 184.66617 * 4 3 2 6 6 C 1.47759 * 120.00150 * 4.67001 * 4 3 2 7 7 C 1.40595 * 126.04443 * 185.78803 * 6 4 3 8 8 N 1.31252 * 106.62971 * 179.97438 * 7 6 4 9 9 N 1.40112 * 107.17004 * 359.97438 * 8 7 6 10 10 C 1.40138 * 125.56343 * 180.02562 * 9 8 7 11 11 C 1.38855 * 120.06894 * 179.70172 * 10 9 8 12 12 C 1.38118 * 119.93138 * 179.79214 * 11 10 9 13 13 C 1.38286 * 120.06610 * 0.46443 * 12 11 10 14 14 C 1.38281 * 120.13971 * 359.78629 * 13 12 11 15 15 C 1.38120 * 120.06902 * 359.97438 * 14 13 12 16 16 N 1.28701 * 108.86847 * 359.76954 * 9 8 7 17 17 C 1.46501 * 120.00303 * 92.63522 * 3 2 1 18 18 C 1.53496 * 114.20291 * 232.62888 * 17 3 2 19 19 N 1.47071 * 87.98266 * 220.14759 * 18 17 3 20 20 C 1.36937 * 136.05744 * 207.09056 * 19 18 17 21 21 H 1.08006 * 119.99703 * 6.32631 * 20 19 18 22 22 C 1.38807 * 119.99975 * 186.33101 * 20 19 18 23 23 N 1.31626 * 119.99900 * 195.01997 * 22 20 19 24 24 Si 1.86801 * 120.00242 * 15.02086 * 22 20 19 25 25 H 1.48500 * 109.46820 * 270.00177 * 24 22 20 26 26 H 1.48497 * 109.46908 * 29.99778 * 24 22 20 27 27 H 1.48496 * 109.47412 * 150.00108 * 24 22 20 28 28 C 1.47068 * 87.88598 * 27.34139 * 19 18 17 29 29 H 1.09000 * 109.47589 * 300.00523 * 1 2 3 30 30 H 1.09002 * 109.46984 * 60.00661 * 1 2 3 31 31 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47589 * 239.99477 * 2 1 3 33 33 H 1.09002 * 109.46984 * 119.99339 * 2 1 3 34 34 H 1.08005 * 126.68864 * 359.92312 * 7 6 4 35 35 H 1.07993 * 120.03315 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96307 * 180.25256 * 12 11 10 37 37 H 1.08003 * 119.93016 * 179.77162 * 13 12 11 38 38 H 1.07994 * 119.96689 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.03180 * 180.02562 * 15 14 13 40 40 H 1.08997 * 113.28106 * 5.69270 * 17 3 2 41 41 H 1.09002 * 113.46862 * 105.36915 * 18 17 3 42 42 H 1.08997 * 113.46959 * 334.92178 * 18 17 3 43 43 H 0.97001 * 119.99956 * 354.94967 * 23 22 20 44 44 H 1.09004 * 113.46526 * 87.43602 * 28 19 18 45 45 H 1.08995 * 113.46664 * 217.87801 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1923 2.0344 -1.1660 5 8 2.6771 3.1491 -1.1718 6 6 1.7939 1.3954 -2.4374 7 6 2.0203 1.9074 -3.7271 8 7 1.5144 1.0381 -4.5704 9 7 0.9765 -0.0097 -3.8115 10 6 0.3394 -1.1462 -4.3274 11 6 -0.1480 -2.1213 -3.4673 12 6 -0.7792 -3.2383 -3.9787 13 6 -0.9176 -3.3907 -5.3462 14 6 -0.4287 -2.4239 -6.2055 15 6 0.1992 -1.3023 -5.7001 16 7 1.1678 0.2396 -2.5634 17 6 2.3175 2.0525 1.2674 18 6 1.6249 3.4116 1.4384 19 7 2.8705 3.9122 2.0393 20 6 3.2086 4.8867 2.9399 21 1 2.4356 5.4339 3.4591 22 6 4.5448 5.1715 3.1854 23 7 4.8834 5.8798 4.2418 24 14 5.8625 4.5494 2.0165 25 1 6.3238 3.2091 2.4589 26 1 5.3015 4.4520 0.6450 27 1 7.0094 5.4926 2.0163 28 6 3.5937 2.9096 1.2426 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.5135 2.8355 -3.9755 35 1 -0.0369 -2.0046 -2.3995 36 1 -1.1621 -3.9950 -3.3100 37 1 -1.4083 -4.2668 -5.7438 38 1 -0.5386 -2.5456 -7.2730 39 1 0.5804 -0.5474 -6.3718 40 1 2.2330 1.3957 2.1331 41 1 0.7865 3.3870 2.1345 42 1 1.3749 3.8934 0.4932 43 1 4.1964 6.2647 4.8082 44 1 3.8625 3.2591 0.2457 45 1 4.4324 2.4574 1.7717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957364778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:17 Heat of formation + Delta-G solvation = 201.265696 kcal Electronic energy + Delta-G solvation = -29565.529701 eV Core-core repulsion = 25589.637643 eV Total energy + Delta-G solvation = -3975.892058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.98868 -40.29148 -39.56279 -37.30146 -35.71104 -34.19131 -32.71214 -32.19410 -31.44633 -30.27949 -29.93394 -27.63241 -25.38207 -25.05973 -24.13112 -23.41245 -23.06646 -21.84800 -21.73528 -20.10822 -19.11961 -18.61672 -17.45331 -16.96573 -16.72896 -16.59233 -15.89822 -15.65408 -15.17418 -15.04455 -14.81274 -14.47079 -14.21876 -14.08825 -13.86039 -13.56051 -13.33780 -13.22569 -12.94446 -12.54675 -12.39223 -12.09339 -11.96291 -11.81437 -11.61482 -11.51049 -11.31757 -11.15101 -11.02358 -10.83129 -10.57163 -10.35658 -10.12793 -9.57784 -9.56978 -9.52083 -9.09714 -8.71430 -8.57856 -8.26591 -7.00309 -6.20827 -3.10455 0.13637 0.77374 1.41024 1.57999 1.66109 2.96683 3.17400 3.26569 3.43426 3.52603 3.65194 3.78455 4.29477 4.33238 4.46951 4.55551 4.66133 4.71411 4.78825 4.92272 4.94034 5.01475 5.10212 5.11801 5.30365 5.38062 5.41880 5.43130 5.50064 5.58019 5.65002 5.71981 5.77081 5.81872 5.86047 5.94045 6.06427 6.11234 6.22039 6.38356 6.45333 6.48579 6.54536 6.66129 7.23404 7.26587 7.42565 7.56500 8.24383 8.33373 9.07986 9.61405 10.49556 11.29916 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.002645 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.419508 B =10583.152967 C =11181.126730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.104 3.896 3 N -0.585 5.585 4 C 0.596 3.404 5 O -0.502 6.502 6 C -0.044 4.044 7 C 0.082 3.918 8 N -0.281 5.281 9 N -0.169 5.169 10 C 0.159 3.841 11 C -0.113 4.113 12 C -0.099 4.099 13 C -0.119 4.119 14 C -0.100 4.100 15 C -0.109 4.109 16 N -0.195 5.195 17 C 0.098 3.902 18 C 0.113 3.887 19 N -0.618 5.618 20 C -0.297 4.297 21 H 0.081 0.919 22 C -0.024 4.024 23 N -0.935 5.935 24 Si 1.058 2.942 25 H -0.296 1.296 26 H -0.274 1.274 27 H -0.297 1.297 28 C 0.084 3.916 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.219 0.781 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.260 0.740 44 H 0.088 0.912 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 -22.804 -21.090 33.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.317 5.317 4 C 0.380 3.620 5 O -0.375 6.375 6 C -0.211 4.211 7 C -0.109 4.109 8 N -0.108 5.108 9 N -0.061 5.061 10 C 0.068 3.932 11 C -0.134 4.134 12 C -0.118 4.118 13 C -0.138 4.138 14 C -0.119 4.119 15 C -0.130 4.130 16 N -0.040 5.040 17 C -0.005 4.005 18 C -0.014 4.014 19 N -0.346 5.346 20 C -0.424 4.424 21 H 0.099 0.901 22 C -0.223 4.223 23 N -0.577 5.577 24 Si 0.889 3.111 25 H -0.224 1.224 26 H -0.199 1.199 27 H -0.225 1.225 28 C -0.042 4.042 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.236 0.764 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.757 -23.069 -21.671 33.764 hybrid contribution -1.341 0.894 0.573 1.710 sum -13.098 -22.175 -21.098 33.293 Atomic orbital electron populations 1.22108 0.95776 1.01696 1.02270 1.21772 0.94842 0.82147 1.03201 1.47845 1.64060 1.14090 1.05700 1.16797 0.79022 0.84943 0.81192 1.90853 1.42862 1.18325 1.85461 1.23238 1.07139 0.93726 0.97016 1.25189 0.96929 0.99673 0.89132 1.78025 1.14961 0.97399 1.20424 1.48426 1.41166 1.16036 1.00448 1.17396 0.98362 0.84291 0.93200 1.21007 0.98816 0.93042 1.00502 1.21079 0.98098 0.96934 0.95653 1.21345 0.99566 0.99385 0.93474 1.21075 0.97303 0.93016 1.00502 1.20958 1.00144 0.99406 0.92512 1.74065 1.12807 1.15495 1.01584 1.23737 0.99895 0.93227 0.83655 1.22673 0.91581 0.90607 0.96574 1.45910 1.02731 1.39499 1.46429 1.20108 0.94127 1.13938 1.14196 0.90087 1.25742 0.96752 0.99682 1.00110 1.70925 1.35311 1.37723 1.13751 0.83856 0.75609 0.75082 0.76511 1.22377 1.19934 1.22478 1.23470 0.93848 0.89052 0.97840 0.92405 0.92431 0.92011 0.89439 0.90305 0.76421 0.84058 0.84609 0.85140 0.84705 0.84137 0.86485 0.94081 0.93468 0.93023 0.89467 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.70 37.16 0.36 -1.24 16 2 C 0.10 1.16 5.70 -4.04 -0.02 1.14 16 3 N -0.58 -8.87 2.76 -166.87 -0.46 -9.33 16 4 C 0.60 9.72 7.13 -12.37 -0.09 9.63 16 5 O -0.50 -9.99 12.47 5.31 0.07 -9.93 16 6 C -0.04 -0.60 6.64 -82.99 -0.55 -1.16 16 7 C 0.08 0.99 11.91 -16.91 -0.20 0.79 16 8 N -0.28 -3.40 11.90 30.85 0.37 -3.03 16 9 N -0.17 -1.97 4.44 32.48 0.14 -1.83 16 10 C 0.16 1.51 6.74 -83.60 -0.56 0.94 16 11 C -0.11 -0.86 9.61 -39.40 -0.38 -1.24 16 12 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 13 C -0.12 -0.58 10.04 -39.55 -0.40 -0.97 16 14 C -0.10 -0.55 10.04 -39.61 -0.40 -0.95 16 15 C -0.11 -0.86 9.65 -39.39 -0.38 -1.24 16 16 N -0.20 -2.36 6.21 33.29 0.21 -2.15 16 17 C 0.10 1.79 4.80 -67.68 -0.32 1.47 16 18 C 0.11 2.43 8.10 -8.50 -0.07 2.36 16 19 N -0.62 -16.20 3.64 -184.59 -0.67 -16.87 16 20 C -0.30 -8.97 11.03 -15.06 -0.17 -9.14 16 21 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 22 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 23 N -0.93 -30.46 13.70 55.49 0.76 -29.70 16 24 Si 1.06 28.24 25.47 -169.99 -4.33 23.91 16 25 H -0.30 -7.52 6.96 56.52 0.39 -7.13 16 26 H -0.27 -7.06 5.62 56.52 0.32 -6.74 16 27 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 28 C 0.08 1.92 4.96 -8.36 -0.04 1.88 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 6.67 -51.93 -0.35 0.31 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.95 5.64 -51.93 -0.29 0.66 16 33 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 34 H 0.22 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.14 1.02 7.67 -52.49 -0.40 0.62 16 36 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.13 0.32 8.06 -52.48 -0.42 -0.10 16 38 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.14 1.09 7.67 -52.49 -0.40 0.69 16 40 H 0.12 1.91 7.96 -51.93 -0.41 1.50 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 1.06 6.49 -51.93 -0.34 0.73 16 43 H 0.26 8.33 8.73 -40.82 -0.36 7.97 16 44 H 0.09 2.12 4.13 -51.93 -0.21 1.91 16 45 H 0.04 1.01 6.07 -51.93 -0.32 0.69 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -36.65 365.58 -7.89 -44.54 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.76 Total: -1.61 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.72 Total: 0.50 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.35 Total: -62.91 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 28.24 SS G_CDS: -4.33 Total: 23.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.65 -7.89 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957364778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.804 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds