Wall clock time and date at job start Wed Apr 1 2020 00:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34778 * 119.99505 * 272.63132 * 3 2 1 5 5 O 1.21562 * 119.99802 * 184.66617 * 4 3 2 6 6 C 1.47759 * 120.00150 * 4.67001 * 4 3 2 7 7 C 1.40595 * 126.04443 * 185.78803 * 6 4 3 8 8 N 1.31252 * 106.62971 * 179.97438 * 7 6 4 9 9 N 1.40112 * 107.17004 * 359.97438 * 8 7 6 10 10 C 1.40138 * 125.56343 * 180.02562 * 9 8 7 11 11 C 1.38855 * 120.06894 * 179.70172 * 10 9 8 12 12 C 1.38118 * 119.93138 * 179.79214 * 11 10 9 13 13 C 1.38286 * 120.06610 * 0.46443 * 12 11 10 14 14 C 1.38281 * 120.13971 * 359.78629 * 13 12 11 15 15 C 1.38120 * 120.06902 * 359.97438 * 14 13 12 16 16 N 1.28701 * 108.86847 * 359.76954 * 9 8 7 17 17 C 1.46501 * 120.00303 * 92.63522 * 3 2 1 18 18 C 1.53496 * 114.20291 * 232.62888 * 17 3 2 19 19 N 1.47071 * 87.98266 * 220.14759 * 18 17 3 20 20 C 1.36937 * 136.05744 * 207.09056 * 19 18 17 21 21 H 1.08006 * 119.99703 * 6.32631 * 20 19 18 22 22 C 1.38807 * 119.99975 * 186.33101 * 20 19 18 23 23 N 1.31626 * 119.99900 * 195.01997 * 22 20 19 24 24 Si 1.86801 * 120.00242 * 15.02086 * 22 20 19 25 25 H 1.48500 * 109.46820 * 270.00177 * 24 22 20 26 26 H 1.48497 * 109.46908 * 29.99778 * 24 22 20 27 27 H 1.48496 * 109.47412 * 150.00108 * 24 22 20 28 28 C 1.47068 * 87.88598 * 27.34139 * 19 18 17 29 29 H 1.09000 * 109.47589 * 300.00523 * 1 2 3 30 30 H 1.09002 * 109.46984 * 60.00661 * 1 2 3 31 31 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47589 * 239.99477 * 2 1 3 33 33 H 1.09002 * 109.46984 * 119.99339 * 2 1 3 34 34 H 1.08005 * 126.68864 * 359.92312 * 7 6 4 35 35 H 1.07993 * 120.03315 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.96307 * 180.25256 * 12 11 10 37 37 H 1.08003 * 119.93016 * 179.77162 * 13 12 11 38 38 H 1.07994 * 119.96689 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.03180 * 180.02562 * 15 14 13 40 40 H 1.08997 * 113.28106 * 5.69270 * 17 3 2 41 41 H 1.09002 * 113.46862 * 105.36915 * 18 17 3 42 42 H 1.08997 * 113.46959 * 334.92178 * 18 17 3 43 43 H 0.97001 * 119.99956 * 354.94967 * 23 22 20 44 44 H 1.09004 * 113.46526 * 87.43602 * 28 19 18 45 45 H 1.08995 * 113.46664 * 217.87801 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1923 2.0344 -1.1660 5 8 2.6771 3.1491 -1.1718 6 6 1.7939 1.3954 -2.4374 7 6 2.0203 1.9074 -3.7271 8 7 1.5144 1.0381 -4.5704 9 7 0.9765 -0.0097 -3.8115 10 6 0.3394 -1.1462 -4.3274 11 6 -0.1480 -2.1213 -3.4673 12 6 -0.7792 -3.2383 -3.9787 13 6 -0.9176 -3.3907 -5.3462 14 6 -0.4287 -2.4239 -6.2055 15 6 0.1992 -1.3023 -5.7001 16 7 1.1678 0.2396 -2.5634 17 6 2.3175 2.0525 1.2674 18 6 1.6249 3.4116 1.4384 19 7 2.8705 3.9122 2.0393 20 6 3.2086 4.8867 2.9399 21 1 2.4356 5.4339 3.4591 22 6 4.5448 5.1715 3.1854 23 7 4.8834 5.8798 4.2418 24 14 5.8625 4.5494 2.0165 25 1 6.3238 3.2091 2.4589 26 1 5.3015 4.4520 0.6450 27 1 7.0094 5.4926 2.0163 28 6 3.5937 2.9096 1.2426 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.5135 2.8355 -3.9755 35 1 -0.0369 -2.0046 -2.3995 36 1 -1.1621 -3.9950 -3.3100 37 1 -1.4083 -4.2668 -5.7438 38 1 -0.5386 -2.5456 -7.2730 39 1 0.5804 -0.5474 -6.3718 40 1 2.2330 1.3957 2.1331 41 1 0.7865 3.3870 2.1345 42 1 1.3749 3.8934 0.4932 43 1 4.1964 6.2647 4.8082 44 1 3.8625 3.2591 0.2457 45 1 4.4324 2.4574 1.7717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957364778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:16 Heat of formation + Delta-G solvation = 176.645915 kcal Electronic energy + Delta-G solvation = -29566.597295 eV Core-core repulsion = 25589.637643 eV Total energy + Delta-G solvation = -3976.959652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.90532 -41.67763 -40.11891 -38.91500 -36.92979 -34.96280 -34.55863 -33.47592 -31.95201 -31.45444 -30.71847 -29.41629 -26.97514 -26.35255 -25.07120 -24.39720 -24.22291 -22.79405 -22.44170 -21.80014 -20.39854 -19.58128 -19.37516 -18.16969 -17.59631 -17.44003 -17.16159 -16.68846 -16.39273 -16.34072 -15.89433 -15.48393 -15.36656 -15.22526 -15.03813 -14.88933 -14.44898 -14.34430 -14.00531 -13.86721 -13.49223 -13.28014 -13.18125 -12.96770 -12.73650 -12.56296 -12.52611 -12.44156 -12.18237 -11.96041 -11.87872 -11.69801 -11.53343 -11.34694 -11.21392 -10.98125 -10.77259 -10.04170 -9.69130 -9.35033 -9.16902 -8.62851 -5.45430 -0.59305 0.31700 0.50597 0.77573 0.83001 1.37483 1.51824 1.68653 1.76506 2.03812 2.49969 2.51369 2.73869 3.13035 3.15837 3.40982 3.57162 3.72115 3.86408 3.89241 4.07932 4.15968 4.18358 4.35508 4.36685 4.40109 4.42494 4.45438 4.55641 4.60272 4.65660 4.72068 4.77151 4.84269 4.88509 5.01790 5.02705 5.15377 5.17410 5.24634 5.29714 5.41407 5.49619 5.55377 5.72016 5.94113 5.94916 6.26321 6.57948 6.70318 6.99810 7.32138 8.28714 8.89461 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.002645 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.419508 B =10583.152967 C =11181.126730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.583 5.583 4 C 0.597 3.403 5 O -0.546 6.546 6 C -0.069 4.069 7 C 0.079 3.921 8 N -0.291 5.291 9 N -0.158 5.158 10 C 0.116 3.884 11 C -0.118 4.118 12 C -0.098 4.098 13 C -0.108 4.108 14 C -0.100 4.100 15 C -0.119 4.119 16 N -0.180 5.180 17 C 0.135 3.865 18 C 0.112 3.888 19 N -0.648 5.648 20 C -0.287 4.287 21 H 0.053 0.947 22 C -0.080 4.080 23 N -0.966 5.966 24 Si 1.099 2.901 25 H -0.273 1.273 26 H -0.266 1.266 27 H -0.301 1.301 28 C 0.075 3.925 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.233 0.767 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.133 0.867 40 H 0.147 0.853 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.248 0.752 44 H 0.077 0.923 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 -27.284 -23.062 38.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.314 5.314 4 C 0.383 3.617 5 O -0.422 6.422 6 C -0.233 4.233 7 C -0.111 4.111 8 N -0.119 5.119 9 N -0.052 5.052 10 C 0.026 3.974 11 C -0.139 4.139 12 C -0.116 4.116 13 C -0.126 4.126 14 C -0.119 4.119 15 C -0.140 4.140 16 N -0.027 5.027 17 C 0.030 3.970 18 C -0.015 4.015 19 N -0.376 5.376 20 C -0.414 4.414 21 H 0.071 0.929 22 C -0.272 4.272 23 N -0.612 5.612 24 Si 0.925 3.075 25 H -0.200 1.200 26 H -0.192 1.192 27 H -0.229 1.229 28 C -0.050 4.050 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.249 0.751 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.177 0.823 39 H 0.151 0.849 40 H 0.165 0.835 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.296 -27.613 -23.672 38.725 hybrid contribution -1.129 2.092 1.018 2.586 sum -14.425 -25.521 -22.654 37.049 Atomic orbital electron populations 1.22054 0.94665 1.03310 1.01150 1.22058 0.95660 0.79707 1.04632 1.47847 1.63809 1.15452 1.04258 1.17084 0.78048 0.84389 0.82138 1.90821 1.44882 1.20263 1.86262 1.22791 1.09474 0.94885 0.96198 1.25438 0.96830 1.00192 0.88669 1.78020 1.15503 0.97730 1.20629 1.48724 1.39988 1.16216 1.00230 1.17865 1.00642 0.84549 0.94297 1.21197 0.98881 0.93289 1.00497 1.21461 0.97045 0.96538 0.96563 1.21793 0.97909 0.99738 0.93177 1.21421 0.96278 0.92128 1.02054 1.21092 1.00702 1.00291 0.91909 1.73989 1.12038 1.14689 1.01942 1.23189 0.95481 0.92398 0.85917 1.22783 0.90611 0.92269 0.95824 1.46014 1.05685 1.39247 1.46629 1.19999 0.93489 1.13814 1.14130 0.92887 1.26906 0.99188 1.00256 1.00887 1.71011 1.35041 1.39935 1.15201 0.83318 0.73408 0.75636 0.75155 1.19954 1.19168 1.22854 1.23563 0.95789 0.89172 0.96478 0.92946 0.94074 0.89017 0.88908 0.87941 0.75092 0.83877 0.81854 0.81995 0.82268 0.84861 0.83550 0.92955 0.94510 0.94311 0.90535 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.70 71.98 0.70 -1.93 16 2 C 0.10 1.96 5.70 86.38 0.49 2.45 16 3 N -0.58 -16.68 2.76 -800.13 -2.21 -18.89 16 4 C 0.60 19.26 7.13 86.76 0.62 19.88 16 5 O -0.55 -22.08 12.47 -3.91 -0.05 -22.13 16 6 C -0.07 -1.85 6.64 42.20 0.28 -1.57 16 7 C 0.08 1.91 11.91 85.35 1.02 2.93 16 8 N -0.29 -6.96 11.90 -56.32 -0.67 -7.63 16 9 N -0.16 -3.54 4.44 -51.14 -0.23 -3.77 16 10 C 0.12 2.03 6.74 38.11 0.26 2.29 16 11 C -0.12 -1.49 9.61 22.39 0.22 -1.27 16 12 C -0.10 -0.68 10.04 22.25 0.22 -0.45 16 13 C -0.11 -0.58 10.04 22.29 0.22 -0.36 16 14 C -0.10 -0.79 10.04 22.25 0.22 -0.57 16 15 C -0.12 -1.68 9.65 22.39 0.22 -1.47 16 16 N -0.18 -4.14 6.21 -48.60 -0.30 -4.44 16 17 C 0.13 4.66 4.80 45.55 0.22 4.88 16 18 C 0.11 4.76 8.10 83.18 0.67 5.43 16 19 N -0.65 -34.15 3.64 -737.93 -2.68 -36.84 16 20 C -0.29 -17.75 11.03 84.03 0.93 -16.82 16 21 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 22 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 23 N -0.97 -64.86 13.70 21.65 0.30 -64.57 16 24 Si 1.10 57.95 25.47 68.60 1.75 59.70 16 25 H -0.27 -13.28 6.96 99.48 0.69 -12.58 16 26 H -0.27 -13.60 5.62 99.48 0.56 -13.04 16 27 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 28 C 0.08 3.40 4.96 83.27 0.41 3.81 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.85 6.67 -2.39 -0.02 0.84 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.77 5.64 -2.39 -0.01 1.76 16 33 H 0.10 1.56 7.94 -2.39 -0.02 1.54 16 34 H 0.23 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.14 1.67 7.67 -2.91 -0.02 1.64 16 36 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.16 -0.11 8.06 -2.91 -0.02 -0.13 16 38 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 39 H 0.13 1.99 7.67 -2.91 -0.02 1.97 16 40 H 0.15 4.28 7.96 -2.39 -0.02 4.26 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.68 6.49 -2.39 -0.02 1.66 16 43 H 0.25 16.59 8.73 -92.71 -0.81 15.78 16 44 H 0.08 3.72 4.13 -2.39 -0.01 3.71 16 45 H 0.04 1.88 6.07 -2.39 -0.01 1.86 16 Total: -1.00 -83.02 365.58 3.89 -79.13 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.82 Total: 6.78 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 7.16 Total: 12.66 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -5.79 Total: -136.14 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 57.95 SS G_CDS: 1.75 Total: 59.70 kcal Total: -83.02 3.89 -79.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957364778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.780 kcal (2) G-P(sol) polarization free energy of solvation -83.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds