Wall clock time and date at job start Wed Apr 1 2020 01:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36438 * 125.49193 * 2 1 4 4 C 1.34583 * 108.55807 * 179.72718 * 3 2 1 5 5 C 1.41923 * 107.33783 * 0.40201 * 4 3 2 6 6 C 1.48048 * 126.47989 * 179.86602 * 5 4 3 7 7 C 1.36683 * 126.59526 * 359.96441 * 6 5 4 8 8 C 1.41224 * 105.43490 * 180.16389 * 7 6 5 9 9 C 1.47741 * 126.33862 * 179.88442 * 8 7 6 10 10 O 1.21573 * 120.00105 * 359.71190 * 9 8 7 11 11 N 1.34777 * 120.00100 * 179.71322 * 9 8 7 12 12 C 1.46498 * 120.00147 * 179.97438 * 11 9 8 13 13 H 1.08999 * 115.49303 * 350.37703 * 12 11 9 14 14 C 1.52999 * 117.44345 * 204.99752 * 12 11 9 15 15 H 1.09000 * 119.53968 * 5.72006 * 14 12 11 16 16 C 1.54392 * 118.12469 * 160.80982 * 14 12 11 17 17 N 1.48143 * 104.61902 * 89.20997 * 16 14 12 18 18 C 1.36925 * 127.84034 * 140.41340 * 17 16 14 19 19 H 1.08000 * 120.00575 * 195.57497 * 18 17 16 20 20 C 1.38819 * 120.00093 * 15.57624 * 18 17 16 21 21 N 1.31620 * 119.99411 * 9.10013 * 20 18 17 22 22 Si 1.86795 * 120.00280 * 189.09323 * 20 18 17 23 23 H 1.48510 * 109.46798 * 60.00419 * 22 20 18 24 24 H 1.48500 * 109.47313 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47558 * 300.00267 * 22 20 18 26 26 C 1.48151 * 104.32041 * 320.41976 * 17 16 14 27 27 C 1.54276 * 61.50231 * 253.26844 * 14 12 11 28 28 H 1.09005 * 121.81980 * 108.86267 * 27 14 12 29 29 N 1.31818 * 107.31844 * 359.61889 * 8 7 6 30 30 N 1.28447 * 110.43747 * 0.24057 * 29 8 7 31 31 H 0.96996 * 124.99900 * 179.97438 * 30 29 8 32 32 C 1.36158 * 125.49038 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46384 * 270.01871 * 1 2 3 34 34 H 1.08997 * 109.47554 * 30.01242 * 1 2 3 35 35 H 1.09000 * 109.47378 * 150.02435 * 1 2 3 36 36 H 1.07999 * 125.71972 * 359.97220 * 3 2 1 37 37 H 1.08004 * 126.33093 * 180.24766 * 4 3 2 38 38 H 1.08008 * 127.28256 * 0.02819 * 7 6 5 39 39 H 0.97004 * 119.99656 * 359.97438 * 11 9 8 40 40 H 1.09009 * 110.40300 * 330.42631 * 16 14 12 41 41 H 1.09001 * 110.40947 * 207.99928 * 16 14 12 42 42 H 0.97005 * 119.99784 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.40652 * 158.37016 * 26 17 16 44 44 H 1.09000 * 110.40418 * 280.79448 * 26 17 16 45 45 H 1.07997 * 125.97698 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1109 0.0000 4 6 3.5446 0.7189 0.0061 5 6 3.5546 -0.7003 0.0005 6 6 4.7512 -1.5721 0.0014 7 6 6.0560 -1.1649 0.0070 8 6 6.8203 -2.3525 0.0015 9 6 8.2948 -2.4445 0.0020 10 8 8.9672 -1.4316 0.0023 11 7 8.8947 -3.6515 0.0021 12 6 10.3568 -3.7428 0.0021 13 1 10.8855 -2.8039 -0.1625 14 6 10.9838 -5.0150 -0.5716 15 1 10.3462 -5.7633 -1.0424 16 6 12.4664 -4.9665 -0.9998 17 7 13.2204 -5.3362 0.2207 18 6 14.3334 -6.1284 0.3127 19 1 14.6379 -6.5227 1.2709 20 6 15.0705 -6.4247 -0.8257 21 7 14.8102 -5.8058 -1.9577 22 14 16.4318 -7.7017 -0.7509 23 1 15.8609 -9.0104 -0.3424 24 1 17.0614 -7.8330 -2.0893 25 1 17.4547 -7.2775 0.2384 26 6 12.4968 -4.6544 1.3190 27 6 11.0039 -4.8093 0.9573 28 1 10.3812 -5.4042 1.6255 29 7 5.9745 -3.3635 0.0016 30 7 4.7635 -2.9352 0.0016 31 1 3.9741 -3.4988 0.0013 32 6 2.2555 -1.1086 0.0005 33 1 -0.3632 0.0003 1.0277 34 1 -0.3634 0.8898 -0.5140 35 1 -0.3634 -0.8902 -0.5134 36 1 1.9093 2.1333 -0.0004 37 1 4.4101 1.3649 0.0114 38 1 6.4245 -0.1497 0.0121 39 1 8.3582 -4.4597 0.0022 40 1 12.7359 -3.9609 -1.3231 41 1 12.6558 -5.6862 -1.7962 42 1 15.3250 -6.0131 -2.7533 43 1 12.7091 -5.1387 2.2722 44 1 12.7711 -3.6002 1.3580 45 1 1.9122 -2.1326 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960249103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:50 Heat of formation + Delta-G solvation = 157.710948 kcal Electronic energy + Delta-G solvation = -27380.186261 eV Core-core repulsion = 23402.405528 eV Total energy + Delta-G solvation = -3977.780733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71330 -41.45968 -39.38734 -37.97145 -34.36099 -33.95431 -32.65908 -31.88799 -31.05010 -30.07354 -28.91136 -27.03239 -26.69523 -25.77023 -24.18419 -22.54266 -21.55171 -20.86749 -20.31740 -20.29316 -19.54533 -19.09966 -18.53624 -17.13278 -16.81687 -16.44979 -15.99471 -15.93410 -15.64327 -14.66183 -14.64126 -14.25409 -14.18590 -13.89858 -13.65586 -13.47602 -13.28519 -13.11791 -12.99910 -12.89198 -12.67359 -12.41243 -12.10036 -11.43477 -11.38714 -11.02472 -10.93808 -10.76496 -10.31532 -10.21192 -10.15271 -10.07188 -9.94853 -9.66022 -9.48595 -9.12582 -8.87053 -8.64929 -8.17703 -8.13044 -6.79834 -5.73423 -3.07380 1.17081 1.64422 1.97573 2.35709 2.60089 2.98217 3.25236 3.43772 3.47580 3.48305 3.49222 4.12013 4.29916 4.38288 4.40047 4.51251 4.53198 4.55964 4.67511 4.77289 4.86104 5.19310 5.25375 5.41753 5.46136 5.51130 5.55252 5.64515 5.67534 5.91681 5.93724 6.03305 6.24174 6.27101 6.34437 6.36097 6.60496 6.62284 6.74829 6.78939 6.80234 6.94006 7.00813 7.43338 7.58557 7.60496 7.77560 7.85358 8.27279 8.39159 9.17216 9.80024 10.57873 11.40943 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.045878 B = 0.001579 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.172551 B =17726.775378 C =17882.817372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.447 5.447 3 C -0.012 4.012 4 C -0.166 4.166 5 C -0.107 4.107 6 C 0.097 3.903 7 C -0.165 4.165 8 C -0.003 4.003 9 C 0.605 3.395 10 O -0.530 6.530 11 N -0.684 5.684 12 C 0.095 3.905 13 H 0.136 0.864 14 C -0.176 4.176 15 H 0.101 0.899 16 C 0.185 3.815 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.155 3.845 27 C -0.185 4.185 28 H 0.104 0.896 29 N -0.258 5.258 30 N -0.385 5.385 31 H 0.442 0.558 32 C -0.003 4.003 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.405 0.595 40 H 0.027 0.973 41 H 0.091 0.909 42 H 0.255 0.745 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.032 11.075 3.551 35.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.122 5.122 3 C -0.140 4.140 4 C -0.191 4.191 5 C -0.115 4.115 6 C -0.028 4.028 7 C -0.193 4.193 8 C -0.164 4.164 9 C 0.389 3.611 10 O -0.404 6.404 11 N -0.332 5.332 12 C -0.010 4.010 13 H 0.154 0.846 14 C -0.197 4.197 15 H 0.119 0.881 16 C 0.059 3.941 17 N -0.317 5.317 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.029 3.971 27 C -0.206 4.206 28 H 0.122 0.878 29 N -0.094 5.094 30 N -0.100 5.100 31 H 0.286 0.714 32 C -0.135 4.135 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.185 0.815 37 H 0.164 0.836 38 H 0.181 0.819 39 H 0.239 0.761 40 H 0.045 0.955 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -33.660 10.560 3.403 35.441 hybrid contribution -0.259 -0.685 -0.012 0.733 sum -33.919 9.874 3.390 35.489 Atomic orbital electron populations 1.22080 0.76766 1.04626 1.03498 1.43865 1.06436 1.05951 1.55963 1.21821 0.90140 0.91595 1.10489 1.20883 0.96468 0.93212 1.08573 1.17263 0.88846 0.92841 1.12599 1.19185 0.93951 0.83026 1.06667 1.21595 0.89773 0.99636 1.08336 1.21824 0.94019 0.90729 1.09830 1.16835 0.84199 0.83685 0.76383 1.90801 1.64118 1.35357 1.50119 1.45207 1.06799 1.07971 1.73173 1.22556 0.78548 0.96171 1.03775 0.84623 1.24665 1.00724 0.97590 0.96703 0.88139 1.21072 0.82504 0.99414 0.91134 1.45170 1.29577 1.55531 1.01434 1.18949 1.00377 1.21483 0.94695 0.90604 1.24896 0.98748 1.00255 0.96381 1.69894 1.42752 1.43073 1.00406 0.86189 0.81540 0.81267 0.76688 1.21151 1.21574 1.20992 1.21125 0.87495 0.95814 0.92707 1.25023 0.98705 1.02842 0.94064 0.87768 1.73463 0.89874 1.26590 1.19492 1.43414 1.06596 1.05346 1.54603 0.71387 1.21727 0.89646 0.91695 1.10475 0.90677 0.89532 0.89741 0.81528 0.83636 0.81872 0.76072 0.95541 0.89111 0.93517 0.93046 0.95407 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 11.10 59.85 0.66 0.76 16 2 N -0.45 -2.25 3.14 -124.25 -0.39 -2.64 16 3 C -0.01 -0.07 11.40 -16.80 -0.19 -0.26 16 4 C -0.17 -1.30 10.65 -39.47 -0.42 -1.72 16 5 C -0.11 -0.90 6.12 -105.20 -0.64 -1.54 16 6 C 0.10 0.98 7.13 -82.41 -0.59 0.39 16 7 C -0.17 -2.08 10.57 -39.01 -0.41 -2.49 16 8 C 0.00 -0.05 7.11 -82.86 -0.59 -0.64 16 9 C 0.60 10.10 7.83 -12.38 -0.10 10.01 16 10 O -0.53 -10.45 16.48 5.30 0.09 -10.37 16 11 N -0.68 -10.82 5.57 -52.62 -0.29 -11.12 16 12 C 0.10 1.74 6.20 -65.70 -0.41 1.33 16 13 H 0.14 2.73 7.40 -51.93 -0.38 2.34 16 14 C -0.18 -3.49 6.91 -89.22 -0.62 -4.11 16 15 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 16 C 0.18 4.59 5.69 -2.41 -0.01 4.58 16 17 N -0.59 -15.67 3.38 -168.86 -0.57 -16.24 16 18 C -0.23 -6.45 10.35 -15.06 -0.16 -6.61 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 21 N -0.92 -27.27 10.86 55.49 0.60 -26.66 16 22 Si 0.91 22.26 29.56 -169.99 -5.03 17.23 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.16 3.41 7.06 -2.41 -0.02 3.40 16 27 C -0.18 -3.50 7.23 -86.99 -0.63 -4.13 16 28 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 29 N -0.26 -3.15 11.89 33.37 0.40 -2.76 16 30 N -0.39 -3.52 6.90 33.31 0.23 -3.29 16 31 H 0.44 2.30 8.96 -190.46 -1.71 0.59 16 32 C 0.00 -0.02 11.40 -16.37 -0.19 -0.20 16 33 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 34 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.17 0.51 8.06 -52.49 -0.42 0.08 16 37 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.16 1.93 8.06 -52.48 -0.42 1.50 16 39 H 0.40 5.61 8.54 -40.82 -0.35 5.26 16 40 H 0.03 0.70 8.14 -51.92 -0.42 0.27 16 41 H 0.09 2.49 6.51 -51.93 -0.34 2.15 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -36.11 386.18 -10.94 -47.05 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.40 Total: 4.46 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -4.40 Total: -1.49 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.02 Total: -62.70 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.11 -10.94 -47.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960249103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.758 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds