Wall clock time and date at job start Wed Apr 1 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36438 * 125.49193 * 2 1 4 4 C 1.34583 * 108.55807 * 179.72718 * 3 2 1 5 5 C 1.41923 * 107.33783 * 0.40201 * 4 3 2 6 6 C 1.48048 * 126.47989 * 179.86602 * 5 4 3 7 7 C 1.36683 * 126.59526 * 359.96441 * 6 5 4 8 8 C 1.41224 * 105.43490 * 180.16389 * 7 6 5 9 9 C 1.47741 * 126.33862 * 179.88442 * 8 7 6 10 10 O 1.21573 * 120.00105 * 359.71190 * 9 8 7 11 11 N 1.34777 * 120.00100 * 179.71322 * 9 8 7 12 12 C 1.46498 * 120.00147 * 179.97438 * 11 9 8 13 13 H 1.08999 * 115.49303 * 350.37703 * 12 11 9 14 14 C 1.52999 * 117.44345 * 204.99752 * 12 11 9 15 15 H 1.09000 * 119.53968 * 5.72006 * 14 12 11 16 16 C 1.54392 * 118.12469 * 160.80982 * 14 12 11 17 17 N 1.48143 * 104.61902 * 89.20997 * 16 14 12 18 18 C 1.36925 * 127.84034 * 140.41340 * 17 16 14 19 19 H 1.08000 * 120.00575 * 195.57497 * 18 17 16 20 20 C 1.38819 * 120.00093 * 15.57624 * 18 17 16 21 21 N 1.31620 * 119.99411 * 9.10013 * 20 18 17 22 22 Si 1.86795 * 120.00280 * 189.09323 * 20 18 17 23 23 H 1.48510 * 109.46798 * 60.00419 * 22 20 18 24 24 H 1.48500 * 109.47313 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47558 * 300.00267 * 22 20 18 26 26 C 1.48151 * 104.32041 * 320.41976 * 17 16 14 27 27 C 1.54276 * 61.50231 * 253.26844 * 14 12 11 28 28 H 1.09005 * 121.81980 * 108.86267 * 27 14 12 29 29 N 1.31818 * 107.31844 * 359.61889 * 8 7 6 30 30 N 1.28447 * 110.43747 * 0.24057 * 29 8 7 31 31 H 0.96996 * 124.99900 * 179.97438 * 30 29 8 32 32 C 1.36158 * 125.49038 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46384 * 270.01871 * 1 2 3 34 34 H 1.08997 * 109.47554 * 30.01242 * 1 2 3 35 35 H 1.09000 * 109.47378 * 150.02435 * 1 2 3 36 36 H 1.07999 * 125.71972 * 359.97220 * 3 2 1 37 37 H 1.08004 * 126.33093 * 180.24766 * 4 3 2 38 38 H 1.08008 * 127.28256 * 0.02819 * 7 6 5 39 39 H 0.97004 * 119.99656 * 359.97438 * 11 9 8 40 40 H 1.09009 * 110.40300 * 330.42631 * 16 14 12 41 41 H 1.09001 * 110.40947 * 207.99928 * 16 14 12 42 42 H 0.97005 * 119.99784 * 180.02562 * 21 20 18 43 43 H 1.08999 * 110.40652 * 158.37016 * 26 17 16 44 44 H 1.09000 * 110.40418 * 280.79448 * 26 17 16 45 45 H 1.07997 * 125.97698 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1109 0.0000 4 6 3.5446 0.7189 0.0061 5 6 3.5546 -0.7003 0.0005 6 6 4.7512 -1.5721 0.0014 7 6 6.0560 -1.1649 0.0070 8 6 6.8203 -2.3525 0.0015 9 6 8.2948 -2.4445 0.0020 10 8 8.9672 -1.4316 0.0023 11 7 8.8947 -3.6515 0.0021 12 6 10.3568 -3.7428 0.0021 13 1 10.8855 -2.8039 -0.1625 14 6 10.9838 -5.0150 -0.5716 15 1 10.3462 -5.7633 -1.0424 16 6 12.4664 -4.9665 -0.9998 17 7 13.2204 -5.3362 0.2207 18 6 14.3334 -6.1284 0.3127 19 1 14.6379 -6.5227 1.2709 20 6 15.0705 -6.4247 -0.8257 21 7 14.8102 -5.8058 -1.9577 22 14 16.4318 -7.7017 -0.7509 23 1 15.8609 -9.0104 -0.3424 24 1 17.0614 -7.8330 -2.0893 25 1 17.4547 -7.2775 0.2384 26 6 12.4968 -4.6544 1.3190 27 6 11.0039 -4.8093 0.9573 28 1 10.3812 -5.4042 1.6255 29 7 5.9745 -3.3635 0.0016 30 7 4.7635 -2.9352 0.0016 31 1 3.9741 -3.4988 0.0013 32 6 2.2555 -1.1086 0.0005 33 1 -0.3632 0.0003 1.0277 34 1 -0.3634 0.8898 -0.5140 35 1 -0.3634 -0.8902 -0.5134 36 1 1.9093 2.1333 -0.0004 37 1 4.4101 1.3649 0.0114 38 1 6.4245 -0.1497 0.0121 39 1 8.3582 -4.4597 0.0022 40 1 12.7359 -3.9609 -1.3231 41 1 12.6558 -5.6862 -1.7962 42 1 15.3250 -6.0131 -2.7533 43 1 12.7091 -5.1387 2.2722 44 1 12.7711 -3.6002 1.3580 45 1 1.9122 -2.1326 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960249103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:49 Heat of formation + Delta-G solvation = 133.551186 kcal Electronic energy + Delta-G solvation = -27381.233907 eV Core-core repulsion = 23402.405528 eV Total energy + Delta-G solvation = -3978.828379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.57820 -41.91735 -40.86703 -39.58229 -36.04917 -34.56721 -34.23748 -33.00145 -31.98249 -31.59915 -29.45002 -28.88723 -27.68549 -27.02300 -25.51405 -23.43177 -23.03285 -21.94324 -21.63463 -20.94766 -20.82254 -20.62286 -19.09232 -18.84119 -18.13871 -17.64867 -17.00405 -16.83779 -16.68193 -16.06568 -15.76160 -15.49839 -15.38353 -14.98581 -14.84279 -14.67619 -14.62653 -14.06485 -13.77539 -13.67733 -13.33180 -13.29734 -13.23418 -13.17356 -12.89453 -12.86142 -12.66310 -12.15171 -12.04138 -11.95440 -11.85814 -11.65356 -11.37540 -10.90090 -10.83944 -10.69867 -10.43203 -9.65018 -9.33510 -8.90950 -8.77383 -7.89772 -5.26879 0.38639 0.65390 1.46695 1.48099 1.51777 1.58514 1.72695 1.99436 2.12774 2.16888 2.40511 2.50584 2.84064 3.24507 3.32475 3.57802 3.75938 3.85516 3.92220 4.00514 4.13387 4.14162 4.16814 4.31672 4.40620 4.47527 4.51257 4.54103 4.59843 4.79146 4.81325 4.86105 4.90715 5.01260 5.13973 5.30209 5.31671 5.35862 5.41903 5.45362 5.53529 5.65403 5.83267 6.07337 6.16490 6.17870 6.42133 6.43510 6.86259 7.01449 7.10853 7.68577 8.47628 9.24112 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.045878 B = 0.001579 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.172551 B =17726.775378 C =17882.817372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.445 5.445 3 C -0.009 4.009 4 C -0.197 4.197 5 C -0.145 4.145 6 C 0.120 3.880 7 C -0.194 4.194 8 C -0.027 4.027 9 C 0.605 3.395 10 O -0.568 6.568 11 N -0.671 5.671 12 C 0.114 3.886 13 H 0.115 0.885 14 C -0.174 4.174 15 H 0.122 0.878 16 C 0.189 3.811 17 N -0.617 5.617 18 C -0.244 4.244 19 H 0.084 0.916 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.984 3.016 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.149 3.851 27 C -0.166 4.166 28 H 0.136 0.864 29 N -0.259 5.259 30 N -0.363 5.363 31 H 0.461 0.539 32 C 0.012 3.988 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.192 0.808 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.418 0.582 40 H -0.002 1.002 41 H 0.060 0.940 42 H 0.250 0.750 43 H 0.065 0.935 44 H 0.021 0.979 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.742 10.066 4.619 39.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.119 5.119 3 C -0.139 4.139 4 C -0.221 4.221 5 C -0.153 4.153 6 C -0.006 4.006 7 C -0.222 4.222 8 C -0.186 4.186 9 C 0.391 3.609 10 O -0.445 6.445 11 N -0.320 5.320 12 C 0.007 3.993 13 H 0.132 0.868 14 C -0.195 4.195 15 H 0.140 0.860 16 C 0.063 3.937 17 N -0.341 5.341 18 C -0.372 4.372 19 H 0.101 0.899 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.201 1.201 26 C 0.023 3.977 27 C -0.187 4.187 28 H 0.153 0.847 29 N -0.096 5.096 30 N -0.081 5.081 31 H 0.310 0.690 32 C -0.123 4.123 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.209 0.791 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.255 0.745 40 H 0.016 0.984 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -37.442 9.532 4.501 38.897 hybrid contribution 0.706 -0.251 -0.326 0.817 sum -36.736 9.281 4.175 38.119 Atomic orbital electron populations 1.22389 0.74261 1.06218 1.04699 1.44210 1.07962 1.05374 1.54338 1.22189 0.89608 0.92974 1.09081 1.21056 0.97520 0.93375 1.10175 1.17350 0.89262 0.92920 1.15811 1.19293 0.93788 0.83352 1.04193 1.21661 0.90915 0.99266 1.10363 1.21426 0.92744 0.91930 1.12472 1.17179 0.85316 0.83094 0.75267 1.90775 1.65312 1.36584 1.51866 1.45009 1.05531 1.08531 1.72914 1.22140 0.79931 0.94598 1.02676 0.86765 1.24358 0.98133 0.99397 0.97583 0.85998 1.20801 0.85756 0.96746 0.90360 1.45469 1.29818 1.55853 1.02947 1.19379 1.01093 1.21611 0.95121 0.89878 1.25786 1.01403 1.02403 0.96032 1.70103 1.43915 1.44647 1.00913 0.85088 0.78575 0.78819 0.76428 1.20098 1.21999 1.20065 1.21258 0.89068 0.95105 0.92245 1.24953 0.97234 1.02976 0.93568 0.84668 1.73377 0.90639 1.25999 1.19569 1.43449 1.06449 1.05416 1.52768 0.69036 1.22190 0.88863 0.93306 1.07899 0.89612 0.88123 0.88142 0.79078 0.84359 0.82447 0.74507 0.98408 0.92176 0.94079 0.91664 0.96154 0.78978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.08 11.10 127.77 1.42 1.34 16 2 N -0.45 -3.09 3.14 -547.02 -1.72 -4.81 16 3 C -0.01 -0.09 11.40 83.14 0.95 0.86 16 4 C -0.20 -2.97 10.65 22.35 0.24 -2.73 16 5 C -0.14 -2.24 6.12 -20.24 -0.12 -2.36 16 6 C 0.12 2.31 7.13 40.69 0.29 2.60 16 7 C -0.19 -4.97 10.57 22.64 0.24 -4.73 16 8 C -0.03 -0.75 7.11 42.39 0.30 -0.45 16 9 C 0.61 20.51 7.83 86.76 0.68 21.19 16 10 O -0.57 -23.35 16.48 -3.95 -0.07 -23.41 16 11 N -0.67 -20.83 5.57 -438.66 -2.44 -23.27 16 12 C 0.11 4.14 6.20 46.44 0.29 4.43 16 13 H 0.11 4.77 7.40 -2.39 -0.02 4.75 16 14 C -0.17 -6.88 6.91 -9.89 -0.07 -6.95 16 15 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 16 C 0.19 9.78 5.69 86.54 0.49 10.28 16 17 N -0.62 -33.18 3.38 -688.14 -2.33 -35.51 16 18 C -0.24 -14.01 10.35 84.04 0.87 -13.14 16 19 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 20 C -0.06 -3.63 5.40 84.86 0.46 -3.17 16 21 N -0.95 -58.42 10.86 21.65 0.24 -58.19 16 22 Si 0.98 46.26 29.56 68.60 2.03 48.29 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.15 6.54 7.06 86.53 0.61 7.15 16 27 C -0.17 -6.09 7.23 -8.44 -0.06 -6.15 16 28 H 0.14 4.20 8.14 -2.38 -0.02 4.18 16 29 N -0.26 -5.94 11.89 -48.33 -0.57 -6.52 16 30 N -0.36 -5.89 6.90 -48.51 -0.33 -6.23 16 31 H 0.46 3.36 8.96 -220.01 -1.97 1.38 16 32 C 0.01 0.11 11.40 83.54 0.95 1.06 16 33 H 0.09 -0.23 8.14 -2.38 -0.02 -0.25 16 34 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.42 10.87 8.54 -92.71 -0.79 10.07 16 40 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 41 H 0.06 3.45 6.51 -2.39 -0.02 3.43 16 42 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 43 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -81.41 386.18 0.62 -80.79 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -1.72 Total: 19.64 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 7.53 Total: 9.22 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -7.16 Total: -134.52 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.07 Total: -23.41 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -81.41 0.62 -80.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960249103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.340 kcal (2) G-P(sol) polarization free energy of solvation -81.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds