Wall clock time and date at job start Wed Apr 1 2020 00:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47257 * 2 1 4 4 C 1.50700 * 109.47197 * 240.00206 * 2 1 3 5 5 O 1.21286 * 120.00180 * 239.99812 * 4 2 1 6 6 N 1.34781 * 119.99746 * 60.00029 * 4 2 1 7 7 C 1.46503 * 119.99640 * 180.02562 * 6 4 2 8 8 H 1.08995 * 110.73150 * 36.94950 * 7 6 4 9 9 C 1.54346 * 110.81864 * 273.54328 * 7 6 4 10 10 C 1.51374 * 105.17238 * 268.12364 * 9 7 6 11 11 C 1.38495 * 130.39670 * 162.81530 * 10 9 7 12 12 C 1.38102 * 120.21722 * 180.02562 * 11 10 9 13 13 C 1.38255 * 119.93549 * 359.97438 * 12 11 10 14 14 C 1.38108 * 119.93139 * 359.97438 * 13 12 11 15 15 C 1.38222 * 109.75566 * 342.81492 * 10 9 7 16 16 C 1.51374 * 109.75864 * 359.97438 * 15 10 9 17 17 H 1.08998 * 110.29839 * 136.11499 * 16 15 10 18 18 N 1.46501 * 110.30233 * 258.26765 * 16 15 10 19 19 C 1.36936 * 119.99657 * 270.74513 * 18 16 15 20 20 H 1.07995 * 120.00387 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99757 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99995 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00240 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46880 * 60.00133 * 23 21 19 25 25 H 1.48495 * 109.47595 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47238 * 300.00509 * 23 21 19 27 27 N 1.46505 * 109.47374 * 120.00157 * 2 1 3 28 28 C 1.34428 * 126.82137 * 35.02220 * 27 2 1 29 29 N 1.30829 * 108.07758 * 179.97438 * 28 27 2 30 30 C 1.33239 * 109.82920 * 0.02562 * 29 28 27 31 31 N 1.30714 * 108.94945 * 359.97438 * 30 29 28 32 32 H 1.08996 * 109.47253 * 59.99867 * 1 2 3 33 33 H 1.09000 * 109.46545 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46798 * 299.99550 * 1 2 3 35 35 H 0.97000 * 120.00140 * 359.97438 * 6 4 2 36 36 H 1.08999 * 110.31032 * 27.04822 * 9 7 6 37 37 H 1.08997 * 110.30499 * 149.10412 * 9 7 6 38 38 H 1.07996 * 119.89026 * 359.97299 * 11 10 9 39 39 H 1.07992 * 120.03045 * 180.02562 * 12 11 10 40 40 H 1.07992 * 120.03300 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.88653 * 179.97438 * 14 13 12 42 42 H 0.96994 * 119.99883 * 90.74768 * 18 16 15 43 43 H 0.96997 * 120.00108 * 179.97438 * 22 21 19 44 44 H 1.08003 * 125.95935 * 359.97438 * 28 27 2 45 45 H 1.08002 * 125.53210 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7297 -1.6965 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9407 -3.6508 8 1 2.2065 -2.0195 -3.4954 9 6 3.5954 -0.4280 -4.0474 10 6 3.3424 0.6973 -5.0278 11 6 4.1778 1.7119 -5.4647 12 6 3.7225 2.6423 -6.3780 13 6 2.4288 2.5612 -6.8588 14 6 1.5946 1.5496 -6.4252 15 6 2.0490 0.6162 -5.5085 16 6 1.3445 -0.5694 -4.8845 17 1 0.3358 -0.2919 -4.5787 18 7 1.3008 -1.6891 -5.8283 19 6 0.2516 -1.8092 -6.7000 20 1 -0.5435 -1.0783 -6.6920 21 6 0.2099 -2.8704 -7.5939 22 7 1.1786 -3.7614 -7.6033 23 14 -1.2217 -3.0347 -8.7825 24 1 -1.2848 -1.8316 -9.6508 25 1 -1.0305 -4.2433 -9.6237 26 1 -2.4884 -3.1600 -8.0175 27 7 2.0184 -0.6907 1.1962 28 6 1.4561 -1.7522 1.7996 29 7 2.1941 -2.0702 2.8320 30 6 3.2309 -1.2381 2.9201 31 7 3.1672 -0.3754 1.9401 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.1487 0.5387 -2.5435 36 1 4.1237 -0.0539 -3.1705 37 1 4.1689 -1.2238 -4.5227 38 1 5.1884 1.7761 -5.0892 39 1 4.3766 3.4319 -6.7169 40 1 2.0712 3.2877 -7.5734 41 1 0.5840 1.4872 -6.8009 42 1 2.0151 -2.3453 -5.8357 43 1 1.1493 -4.5031 -8.2276 44 1 0.5528 -2.2548 1.4866 45 1 3.9995 -1.2709 3.6782 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960258227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:03 Heat of formation + Delta-G solvation = 106.422599 kcal Electronic energy + Delta-G solvation = -29320.218057 eV Core-core repulsion = 25340.213294 eV Total energy + Delta-G solvation = -3980.004763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25779 -40.44393 -39.24160 -36.33862 -35.21217 -34.16115 -32.73725 -31.47352 -31.23372 -30.20506 -29.84038 -27.90530 -26.23004 -25.48369 -23.52700 -22.70046 -22.04512 -21.80529 -20.74332 -20.24631 -20.05249 -18.04605 -17.43868 -17.21746 -16.21965 -15.77693 -15.71253 -15.34094 -15.03879 -14.79824 -14.56903 -14.47429 -14.25663 -14.14757 -13.50981 -13.23098 -13.06586 -12.97934 -12.95333 -12.87529 -12.72586 -12.57558 -11.81048 -11.67157 -11.48321 -11.16786 -11.09722 -10.88830 -10.68950 -10.53150 -10.46189 -10.24166 -10.15257 -9.93255 -9.87661 -9.60477 -9.19024 -9.05287 -8.41100 -8.17803 -7.18704 -5.91653 -3.22880 1.44035 1.74953 1.80392 1.95724 2.37476 2.86597 3.03412 3.34749 3.39447 3.41039 4.05276 4.14215 4.18489 4.31379 4.41897 4.47937 4.64546 4.69828 4.96886 4.99058 5.02246 5.17870 5.26582 5.35263 5.41258 5.42584 5.47759 5.51148 5.65263 5.81241 5.90274 6.02004 6.05204 6.08332 6.13798 6.24619 6.29656 6.40475 6.50730 6.57388 6.63331 6.82165 6.89537 7.13732 7.34900 7.40992 7.54122 7.94489 8.03013 8.23859 9.36017 9.86288 10.21593 11.29779 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003244 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.867325 B = 8628.214751 C =10292.067520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 H 0.131 0.869 4 C 0.502 3.498 5 O -0.519 6.519 6 N -0.704 5.704 7 C 0.137 3.863 8 H 0.109 0.891 9 C -0.086 4.086 10 C -0.097 4.097 11 C -0.114 4.114 12 C -0.131 4.131 13 C -0.127 4.127 14 C -0.090 4.090 15 C -0.095 4.095 16 C 0.210 3.790 17 H 0.065 0.935 18 N -0.702 5.702 19 C -0.249 4.249 20 H 0.072 0.928 21 C -0.005 4.005 22 N -0.926 5.926 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 N -0.361 5.361 28 C 0.271 3.729 29 N -0.547 5.547 30 C 0.198 3.802 31 N -0.315 5.315 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.388 0.612 43 H 0.259 0.741 44 H 0.215 0.785 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 12.714 14.263 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.149 0.851 4 C 0.285 3.715 5 O -0.394 6.394 6 N -0.356 5.356 7 C 0.032 3.968 8 H 0.127 0.873 9 C -0.125 4.125 10 C -0.097 4.097 11 C -0.132 4.132 12 C -0.149 4.149 13 C -0.146 4.146 14 C -0.109 4.109 15 C -0.099 4.099 16 C 0.098 3.902 17 H 0.082 0.918 18 N -0.342 5.342 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 N -0.151 5.151 28 C -0.026 4.026 29 N -0.274 5.274 30 C -0.105 4.105 31 N -0.142 5.142 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.223 0.777 43 H 0.069 0.931 44 H 0.232 0.768 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.497 12.249 14.266 18.809 hybrid contribution -0.692 0.064 -1.280 1.456 sum -0.196 12.313 12.986 17.897 Atomic orbital electron populations 1.22203 0.89939 1.04870 1.05140 1.21230 0.96478 0.97982 0.81158 0.85142 1.20499 0.81234 0.85211 0.84570 1.90802 1.36731 1.25568 1.86278 1.45829 1.53087 1.31786 1.04876 1.21989 0.93335 0.97945 0.83579 0.87348 1.21396 0.97425 0.96324 0.97308 1.20507 0.94877 0.95866 0.98490 1.20489 0.98863 0.95175 0.98700 1.20859 0.96078 0.99408 0.98580 1.20978 0.94256 0.98946 1.00380 1.20607 0.99983 0.93798 0.96469 1.21731 0.96135 0.95228 0.96815 1.19786 0.95868 0.86638 0.87880 0.91754 1.42259 1.26694 1.25202 1.39997 1.19125 0.99420 1.07817 1.11573 0.90973 1.24780 0.98306 0.97454 0.99654 1.69650 1.32945 1.14974 1.39628 0.86251 0.81777 0.77172 0.80847 1.21109 1.21569 1.21058 1.50047 1.18997 1.24560 1.21539 1.25913 0.99182 0.87767 0.89720 1.70566 1.07237 1.28622 1.20992 1.25969 0.97268 0.90132 0.97100 1.78036 1.02737 1.25396 1.08012 0.88657 0.90422 0.89994 0.76447 0.91128 0.89342 0.87178 0.86772 0.86679 0.86523 0.77717 0.93134 0.76845 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 8.75 37.16 0.33 -0.56 16 2 C 0.14 1.26 3.77 -69.08 -0.26 0.99 16 3 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.50 6.34 7.22 -10.98 -0.08 6.26 16 5 O -0.52 -9.08 16.15 5.55 0.09 -8.99 16 6 N -0.70 -8.30 5.04 -52.43 -0.26 -8.56 16 7 C 0.14 2.14 2.94 -66.51 -0.20 1.94 16 8 H 0.11 1.98 7.64 -51.93 -0.40 1.58 16 9 C -0.09 -1.35 6.48 -26.85 -0.17 -1.52 16 10 C -0.10 -1.55 6.14 -104.20 -0.64 -2.19 16 11 C -0.11 -1.68 10.04 -39.54 -0.40 -2.08 16 12 C -0.13 -1.81 10.05 -39.62 -0.40 -2.21 16 13 C -0.13 -1.85 10.05 -39.62 -0.40 -2.25 16 14 C -0.09 -1.48 10.04 -39.54 -0.40 -1.88 16 15 C -0.10 -1.63 5.77 -104.20 -0.60 -2.24 16 16 C 0.21 3.74 3.11 -68.04 -0.21 3.52 16 17 H 0.06 1.09 7.99 -51.93 -0.42 0.68 16 18 N -0.70 -16.27 5.13 -53.53 -0.27 -16.55 16 19 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 21 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 22 N -0.93 -26.86 13.06 55.49 0.72 -26.13 16 23 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 N -0.36 -4.19 3.04 -57.24 -0.17 -4.36 16 28 C 0.27 3.02 11.77 -90.66 -1.07 1.95 16 29 N -0.55 -6.99 11.19 -15.83 -0.18 -7.17 16 30 C 0.20 2.35 13.03 -91.81 -1.20 1.16 16 31 N -0.32 -4.17 12.70 29.29 0.37 -3.80 16 32 H 0.09 0.37 7.56 -51.93 -0.39 -0.02 16 33 H 0.08 0.43 7.22 -51.93 -0.38 0.05 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.40 3.56 8.00 -40.82 -0.33 3.23 16 36 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.39 9.81 7.83 -40.82 -0.32 9.49 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.22 1.60 7.32 -52.48 -0.38 1.22 16 45 H 0.22 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -35.00 384.30 -10.83 -45.83 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -5.96 Total: 13.48 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -5.94 Total: -5.87 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: 0.21 Total: -66.58 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.00 -10.83 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960258227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.254 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds