Wall clock time and date at job start Wed Apr 1 2020 00:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47207 * 2 1 4 4 C 1.50698 * 109.46803 * 120.00503 * 2 1 3 5 5 O 1.21279 * 120.00207 * 120.00005 * 4 2 1 6 6 N 1.34779 * 119.99612 * 299.99538 * 4 2 1 7 7 C 1.46503 * 119.99727 * 180.02562 * 6 4 2 8 8 H 1.09000 * 110.72930 * 36.95083 * 7 6 4 9 9 C 1.54347 * 110.82020 * 273.55039 * 7 6 4 10 10 C 1.51373 * 105.16882 * 215.22870 * 9 7 6 11 11 C 1.38495 * 130.38998 * 197.22091 * 10 9 7 12 12 C 1.38103 * 120.21530 * 179.97438 * 11 10 9 13 13 C 1.38256 * 119.93270 * 359.97438 * 12 11 10 14 14 C 1.38098 * 119.93911 * 359.97438 * 13 12 11 15 15 C 1.38213 * 109.75950 * 17.18969 * 10 9 7 16 16 C 1.51369 * 109.75866 * 0.02562 * 15 10 9 17 17 H 1.08993 * 110.39018 * 101.77904 * 16 15 10 18 18 N 1.46504 * 110.30191 * 223.88971 * 16 15 10 19 19 C 1.36943 * 119.99948 * 270.74114 * 18 16 15 20 20 H 1.08000 * 119.99544 * 0.02562 * 19 18 16 21 21 C 1.38807 * 119.99953 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46869 * 89.99831 * 23 21 19 25 25 H 1.48500 * 109.47210 * 209.99863 * 23 21 19 26 26 H 1.48493 * 109.47051 * 329.99907 * 23 21 19 27 27 N 1.46502 * 109.47017 * 240.00359 * 2 1 3 28 28 C 1.34433 * 126.82149 * 324.70932 * 27 2 1 29 29 N 1.30837 * 108.07290 * 179.89955 * 28 27 2 30 30 C 1.33241 * 109.82985 * 0.37482 * 29 28 27 31 31 N 1.30714 * 108.94725 * 359.77412 * 30 29 28 32 32 H 1.09003 * 109.46782 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47300 * 299.99787 * 1 2 3 34 34 H 1.09003 * 109.46988 * 59.99801 * 1 2 3 35 35 H 0.96999 * 120.00610 * 0.02562 * 6 4 2 36 36 H 1.08997 * 110.30742 * 334.15001 * 9 7 6 37 37 H 1.09003 * 110.30761 * 96.30672 * 9 7 6 38 38 H 1.08003 * 119.89565 * 359.95626 * 11 10 9 39 39 H 1.08003 * 120.03342 * 179.97438 * 12 11 10 40 40 H 1.08003 * 120.02729 * 180.02562 * 13 12 11 41 41 H 1.07995 * 119.89374 * 180.02562 * 14 13 12 42 42 H 0.97000 * 120.00318 * 90.74956 * 18 16 15 43 43 H 0.97001 * 120.00163 * 180.02562 * 22 21 19 44 44 H 1.07995 * 125.96053 * 0.03940 * 28 27 2 45 45 H 1.08005 * 125.52473 * 179.79755 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1954 -0.9404 3.6507 8 1 3.2085 -1.3113 3.4952 9 6 1.2451 -2.0902 4.0472 10 6 1.2674 -2.1184 5.5606 11 6 0.8732 -3.1080 6.4456 12 6 0.9879 -2.9085 7.8073 13 6 1.4982 -1.7174 8.2895 14 6 1.8927 -0.7298 7.4086 15 6 1.7772 -0.9276 6.0426 16 6 2.1318 -0.0174 4.8863 17 1 1.3627 0.7431 4.7519 18 7 3.4341 0.6130 5.1165 19 6 3.5089 1.8054 5.7859 20 1 2.6078 2.2808 6.1444 21 6 4.7427 2.4029 6.0036 22 7 5.8408 1.8233 5.5671 23 14 4.8447 4.0290 6.9172 24 1 4.9914 3.7709 8.3722 25 1 6.0182 4.7978 6.4301 26 1 3.6057 4.8111 6.6757 27 7 2.0184 -0.6905 -1.1962 28 6 1.4588 -1.7551 -1.7968 29 7 2.1942 -2.0702 -2.8321 30 6 3.2314 -1.2384 -2.9196 31 7 3.1676 -0.3757 -1.9397 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.1488 0.5384 2.5436 36 1 0.2363 -1.8882 3.6876 37 1 1.6082 -3.0365 3.6460 38 1 0.4746 -4.0387 6.0697 39 1 0.6793 -3.6821 8.4949 40 1 1.5889 -1.5599 9.3541 41 1 2.2916 0.2001 7.7860 42 1 4.2434 0.1859 4.7948 43 1 6.7031 2.2407 5.7195 44 1 0.5581 -2.2605 -1.4813 45 1 4.0001 -1.2715 -3.6776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960258232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:06 Heat of formation + Delta-G solvation = 105.710884 kcal Electronic energy + Delta-G solvation = -29290.945746 eV Core-core repulsion = 25310.910121 eV Total energy + Delta-G solvation = -3980.035625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20128 -40.34069 -39.24705 -36.30892 -35.15886 -34.11516 -32.91391 -31.42385 -31.26536 -30.18540 -29.77237 -27.84137 -26.13115 -25.43802 -23.32248 -22.83943 -21.98909 -21.63789 -20.72525 -20.45317 -19.94689 -17.95809 -17.44388 -17.15110 -16.11921 -15.82542 -15.54690 -15.39776 -15.14681 -14.82803 -14.54518 -14.40180 -14.24376 -13.95722 -13.38402 -13.23617 -13.09476 -12.94292 -12.88053 -12.63457 -12.56071 -12.49610 -12.21333 -11.81276 -11.68476 -11.14467 -11.00584 -10.89029 -10.67934 -10.49636 -10.43737 -10.20530 -10.09927 -9.84962 -9.82020 -9.56103 -9.18104 -8.98481 -8.37831 -8.15741 -7.15900 -5.89507 -3.20989 1.50220 1.73525 1.83409 2.02414 2.44286 2.92017 3.09848 3.34433 3.39451 3.42245 4.09243 4.15847 4.20311 4.35740 4.47171 4.51092 4.67238 4.74133 4.97825 5.01629 5.03706 5.22882 5.26524 5.34412 5.35201 5.43747 5.47513 5.48217 5.64075 5.80076 5.86324 6.00444 6.07385 6.11491 6.16881 6.23912 6.36017 6.40073 6.54970 6.60568 6.65616 6.82949 6.95267 7.16919 7.40416 7.44325 7.55884 7.99882 8.09411 8.25972 9.38139 9.90347 10.25534 11.31900 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.003535 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.141452 B = 7918.093652 C =10202.829070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.134 0.866 4 C 0.505 3.495 5 O -0.522 6.522 6 N -0.702 5.702 7 C 0.142 3.858 8 H 0.102 0.898 9 C -0.085 4.085 10 C -0.107 4.107 11 C -0.115 4.115 12 C -0.131 4.131 13 C -0.129 4.129 14 C -0.079 4.079 15 C -0.092 4.092 16 C 0.209 3.791 17 H 0.070 0.930 18 N -0.711 5.711 19 C -0.250 4.250 20 H 0.072 0.928 21 C -0.005 4.005 22 N -0.925 5.925 23 Si 0.906 3.094 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 N -0.360 5.360 28 C 0.267 3.733 29 N -0.548 5.548 30 C 0.197 3.803 31 N -0.309 5.309 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.403 0.597 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.387 0.613 43 H 0.258 0.742 44 H 0.214 0.786 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 -5.993 -7.952 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 H 0.152 0.848 4 C 0.287 3.713 5 O -0.396 6.396 6 N -0.353 5.353 7 C 0.036 3.964 8 H 0.120 0.880 9 C -0.123 4.123 10 C -0.108 4.108 11 C -0.133 4.133 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.097 4.097 15 C -0.096 4.096 16 C 0.097 3.903 17 H 0.087 0.913 18 N -0.351 5.351 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.202 4.202 22 N -0.571 5.571 23 Si 0.736 3.264 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 N -0.150 5.150 28 C -0.030 4.030 29 N -0.275 5.275 30 C -0.106 4.106 31 N -0.136 5.136 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.238 0.762 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.222 0.778 43 H 0.068 0.932 44 H 0.230 0.770 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.489 -6.148 -8.030 17.669 hybrid contribution 0.165 1.005 0.891 1.353 sum -14.323 -5.143 -7.139 16.810 Atomic orbital electron populations 1.22184 0.90096 1.04472 1.05169 1.21240 0.96279 0.98363 0.81132 0.84847 1.20467 0.81002 0.85181 0.84611 1.90783 1.36602 1.25947 1.86312 1.45785 1.53041 1.31703 1.04784 1.21974 0.98492 0.92051 0.83874 0.88007 1.21320 0.99826 0.99470 0.91729 1.20416 1.00329 0.95157 0.94864 1.20460 1.01812 0.98211 0.92842 1.20887 1.01560 0.97544 0.94912 1.21056 1.00258 0.94067 0.99300 1.20783 0.97257 0.99541 0.92147 1.21643 0.96052 0.96368 0.95561 1.19907 0.90951 0.91544 0.87892 0.91279 1.42432 1.01529 1.23709 1.67384 1.19170 0.92746 0.96878 1.29243 0.91000 1.24766 0.95414 0.98953 1.01052 1.69666 0.97403 1.39767 1.50275 0.86230 0.77148 0.83445 0.79553 1.21570 1.21706 1.20659 1.50047 1.19044 1.24318 1.21601 1.25846 0.99244 0.87957 0.89937 1.70550 1.07333 1.28773 1.20856 1.25981 0.97226 0.90237 0.97165 1.78110 1.02382 1.25236 1.07841 0.90697 0.88730 0.89991 0.76218 0.90315 0.90740 0.87107 0.86724 0.86576 0.85428 0.77791 0.93249 0.77003 0.76707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.76 37.16 0.33 -0.54 16 2 C 0.14 1.38 3.77 -69.08 -0.26 1.11 16 3 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 4 C 0.50 6.81 7.22 -10.99 -0.08 6.73 16 5 O -0.52 -9.46 16.15 5.56 0.09 -9.37 16 6 N -0.70 -8.79 5.06 -52.43 -0.27 -9.06 16 7 C 0.14 2.22 3.03 -66.51 -0.20 2.02 16 8 H 0.10 1.95 7.38 -51.93 -0.38 1.57 16 9 C -0.08 -1.16 6.49 -26.85 -0.17 -1.34 16 10 C -0.11 -1.65 6.14 -104.21 -0.64 -2.29 16 11 C -0.12 -1.63 10.04 -39.54 -0.40 -2.02 16 12 C -0.13 -1.81 10.05 -39.62 -0.40 -2.21 16 13 C -0.13 -1.96 10.05 -39.63 -0.40 -2.36 16 14 C -0.08 -1.41 10.00 -39.53 -0.40 -1.81 16 15 C -0.09 -1.63 5.79 -104.21 -0.60 -2.23 16 16 C 0.21 3.73 3.23 -68.04 -0.22 3.51 16 17 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 18 N -0.71 -16.39 5.14 -53.53 -0.27 -16.66 16 19 C -0.25 -6.33 9.69 -15.06 -0.15 -6.48 16 20 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 21 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 22 N -0.92 -26.97 13.06 55.49 0.72 -26.25 16 23 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 N -0.36 -4.48 3.04 -57.24 -0.17 -4.65 16 28 C 0.27 3.02 11.76 -90.65 -1.07 1.95 16 29 N -0.55 -7.20 11.19 -15.83 -0.18 -7.38 16 30 C 0.20 2.52 13.03 -91.81 -1.20 1.33 16 31 N -0.31 -4.54 12.70 29.29 0.37 -4.16 16 32 H 0.07 0.35 7.22 -51.93 -0.38 -0.03 16 33 H 0.09 0.35 7.56 -51.93 -0.39 -0.05 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 3.91 7.80 -40.82 -0.32 3.59 16 36 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.13 2.47 7.79 -52.49 -0.41 2.06 16 42 H 0.39 10.00 7.61 -40.82 -0.31 9.68 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.21 1.50 7.32 -52.49 -0.38 1.12 16 45 H 0.22 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -35.21 383.04 -10.80 -46.01 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -5.90 Total: 14.33 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -5.95 Total: -4.84 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: 0.21 Total: -68.16 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.21 -10.80 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960258232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.723 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds