Wall clock time and date at job start Wed Apr 1 2020 00:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47207 * 2 1 4 4 C 1.50698 * 109.46803 * 120.00503 * 2 1 3 5 5 O 1.21279 * 120.00207 * 120.00005 * 4 2 1 6 6 N 1.34779 * 119.99612 * 299.99538 * 4 2 1 7 7 C 1.46503 * 119.99727 * 180.02562 * 6 4 2 8 8 H 1.09000 * 110.72930 * 36.95083 * 7 6 4 9 9 C 1.54347 * 110.82020 * 273.55039 * 7 6 4 10 10 C 1.51373 * 105.16882 * 215.22870 * 9 7 6 11 11 C 1.38495 * 130.38998 * 197.22091 * 10 9 7 12 12 C 1.38103 * 120.21530 * 179.97438 * 11 10 9 13 13 C 1.38256 * 119.93270 * 359.97438 * 12 11 10 14 14 C 1.38098 * 119.93911 * 359.97438 * 13 12 11 15 15 C 1.38213 * 109.75950 * 17.18969 * 10 9 7 16 16 C 1.51369 * 109.75866 * 0.02562 * 15 10 9 17 17 H 1.08993 * 110.39018 * 101.77904 * 16 15 10 18 18 N 1.46504 * 110.30191 * 223.88971 * 16 15 10 19 19 C 1.36943 * 119.99948 * 270.74114 * 18 16 15 20 20 H 1.08000 * 119.99544 * 0.02562 * 19 18 16 21 21 C 1.38807 * 119.99953 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00154 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46869 * 89.99831 * 23 21 19 25 25 H 1.48500 * 109.47210 * 209.99863 * 23 21 19 26 26 H 1.48493 * 109.47051 * 329.99907 * 23 21 19 27 27 N 1.46502 * 109.47017 * 240.00359 * 2 1 3 28 28 C 1.34433 * 126.82149 * 324.70932 * 27 2 1 29 29 N 1.30837 * 108.07290 * 179.89955 * 28 27 2 30 30 C 1.33241 * 109.82985 * 0.37482 * 29 28 27 31 31 N 1.30714 * 108.94725 * 359.77412 * 30 29 28 32 32 H 1.09003 * 109.46782 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47300 * 299.99787 * 1 2 3 34 34 H 1.09003 * 109.46988 * 59.99801 * 1 2 3 35 35 H 0.96999 * 120.00610 * 0.02562 * 6 4 2 36 36 H 1.08997 * 110.30742 * 334.15001 * 9 7 6 37 37 H 1.09003 * 110.30761 * 96.30672 * 9 7 6 38 38 H 1.08003 * 119.89565 * 359.95626 * 11 10 9 39 39 H 1.08003 * 120.03342 * 179.97438 * 12 11 10 40 40 H 1.08003 * 120.02729 * 180.02562 * 13 12 11 41 41 H 1.07995 * 119.89374 * 180.02562 * 14 13 12 42 42 H 0.97000 * 120.00318 * 90.74956 * 18 16 15 43 43 H 0.97001 * 120.00163 * 180.02562 * 22 21 19 44 44 H 1.07995 * 125.96053 * 0.03940 * 28 27 2 45 45 H 1.08005 * 125.52473 * 179.79755 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1954 -0.9404 3.6507 8 1 3.2085 -1.3113 3.4952 9 6 1.2451 -2.0902 4.0472 10 6 1.2674 -2.1184 5.5606 11 6 0.8732 -3.1080 6.4456 12 6 0.9879 -2.9085 7.8073 13 6 1.4982 -1.7174 8.2895 14 6 1.8927 -0.7298 7.4086 15 6 1.7772 -0.9276 6.0426 16 6 2.1318 -0.0174 4.8863 17 1 1.3627 0.7431 4.7519 18 7 3.4341 0.6130 5.1165 19 6 3.5089 1.8054 5.7859 20 1 2.6078 2.2808 6.1444 21 6 4.7427 2.4029 6.0036 22 7 5.8408 1.8233 5.5671 23 14 4.8447 4.0290 6.9172 24 1 4.9914 3.7709 8.3722 25 1 6.0182 4.7978 6.4301 26 1 3.6057 4.8111 6.6757 27 7 2.0184 -0.6905 -1.1962 28 6 1.4588 -1.7551 -1.7968 29 7 2.1942 -2.0702 -2.8321 30 6 3.2314 -1.2384 -2.9196 31 7 3.1676 -0.3757 -1.9397 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.1488 0.5384 2.5436 36 1 0.2363 -1.8882 3.6876 37 1 1.6082 -3.0365 3.6460 38 1 0.4746 -4.0387 6.0697 39 1 0.6793 -3.6821 8.4949 40 1 1.5889 -1.5599 9.3541 41 1 2.2916 0.2001 7.7860 42 1 4.2434 0.1859 4.7948 43 1 6.7031 2.2407 5.7195 44 1 0.5581 -2.2605 -1.4813 45 1 4.0001 -1.2715 -3.6776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960258232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:05 Heat of formation + Delta-G solvation = 83.450917 kcal Electronic energy + Delta-G solvation = -29291.911011 eV Core-core repulsion = 25310.910121 eV Total energy + Delta-G solvation = -3981.000890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.11082 -41.54443 -40.40976 -37.58695 -36.05703 -35.78707 -34.16943 -32.89241 -32.35065 -31.25179 -31.01471 -28.97831 -27.66497 -26.21169 -25.04351 -23.98738 -22.94145 -22.70757 -21.84528 -21.75186 -21.08258 -19.34308 -18.83594 -18.19723 -17.38507 -17.06038 -16.61224 -16.55588 -16.29935 -15.99946 -15.86523 -15.64157 -15.19240 -15.14631 -14.99583 -14.70623 -14.25286 -13.91071 -13.82064 -13.74494 -13.44549 -13.36526 -13.30292 -13.26484 -12.86358 -12.69456 -12.47315 -12.26819 -12.19448 -12.02152 -11.80935 -11.59564 -11.51850 -11.06290 -11.03038 -10.79770 -10.54766 -10.24519 -9.60831 -9.38880 -9.08460 -7.95686 -5.25865 0.53008 0.57940 0.61666 1.20347 1.38792 1.46336 1.47059 1.55301 1.98238 2.09456 2.53698 2.94179 3.28682 3.38054 3.46190 3.46557 3.56632 3.71258 3.78925 3.96768 4.06164 4.11906 4.13050 4.28810 4.29625 4.35113 4.38065 4.63933 4.66537 4.69882 4.78444 4.84600 4.93732 4.95312 5.08496 5.20637 5.24456 5.30795 5.39971 5.46178 5.49045 5.64894 5.72830 5.82102 5.88851 6.20409 6.25335 6.39488 7.05396 7.09231 7.29741 7.99851 8.24423 9.27439 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.003535 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.141452 B = 7918.093652 C =10202.829070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.136 0.864 4 C 0.505 3.495 5 O -0.573 6.573 6 N -0.690 5.690 7 C 0.151 3.849 8 H 0.060 0.940 9 C -0.071 4.071 10 C -0.108 4.108 11 C -0.114 4.114 12 C -0.123 4.123 13 C -0.133 4.133 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.207 3.793 17 H 0.082 0.918 18 N -0.724 5.724 19 C -0.230 4.230 20 H 0.082 0.918 21 C -0.071 4.071 22 N -0.971 5.971 23 Si 0.967 3.033 24 H -0.291 1.291 25 H -0.302 1.302 26 H -0.263 1.263 27 N -0.367 5.367 28 C 0.271 3.729 29 N -0.573 5.573 30 C 0.193 3.807 31 N -0.356 5.356 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.419 0.581 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.369 0.631 43 H 0.248 0.752 44 H 0.253 0.747 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.201 -6.944 -7.789 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.154 0.846 4 C 0.290 3.710 5 O -0.451 6.451 6 N -0.342 5.342 7 C 0.045 3.955 8 H 0.078 0.922 9 C -0.109 4.109 10 C -0.109 4.109 11 C -0.132 4.132 12 C -0.140 4.140 13 C -0.151 4.151 14 C -0.125 4.125 15 C -0.123 4.123 16 C 0.098 3.902 17 H 0.099 0.901 18 N -0.362 5.362 19 C -0.362 4.362 20 H 0.100 0.900 21 C -0.264 4.264 22 N -0.621 5.621 23 Si 0.796 3.204 24 H -0.218 1.218 25 H -0.229 1.229 26 H -0.188 1.188 27 N -0.157 5.157 28 C -0.025 4.025 29 N -0.301 5.301 30 C -0.109 4.109 31 N -0.183 5.183 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.153 0.847 41 H 0.117 0.883 42 H 0.201 0.799 43 H 0.057 0.943 44 H 0.268 0.732 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -18.314 -7.072 -7.851 21.144 hybrid contribution 1.226 1.179 0.884 1.917 sum -17.088 -5.893 -6.967 19.372 Atomic orbital electron populations 1.22285 0.85890 1.05981 1.07004 1.21471 0.99237 0.97310 0.78580 0.84601 1.21116 0.79868 0.84523 0.85527 1.90763 1.38853 1.28448 1.87046 1.45636 1.52738 1.31956 1.03848 1.21595 0.97371 0.92516 0.84045 0.92199 1.21244 1.00738 0.98284 0.90673 1.20634 0.99913 0.94533 0.95837 1.20872 1.00674 0.98811 0.92821 1.21316 0.99732 0.97430 0.95569 1.21299 0.99787 0.94045 0.99961 1.20754 0.99168 0.99655 0.92972 1.21505 0.98167 0.97378 0.95220 1.20121 0.88664 0.92163 0.89267 0.90073 1.42589 1.02890 1.23455 1.67249 1.19546 0.92720 0.97007 1.26886 0.89985 1.25506 0.95359 1.02376 1.03128 1.69839 0.97601 1.41515 1.53147 0.85237 0.77153 0.80003 0.77976 1.21790 1.22909 1.18750 1.50202 1.18612 1.24941 1.21980 1.26634 0.99707 0.87162 0.88961 1.70569 1.07964 1.29431 1.22107 1.26554 0.97611 0.89567 0.97184 1.78027 1.04202 1.26916 1.09128 0.89355 0.86508 0.88499 0.74316 0.87087 0.90728 0.83925 0.83155 0.84727 0.88261 0.79943 0.94267 0.73171 0.74302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.76 71.99 0.63 -0.46 16 2 C 0.14 2.60 3.77 44.25 0.17 2.76 16 3 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.50 13.25 7.22 87.66 0.63 13.88 16 5 O -0.57 -21.02 16.15 -3.03 -0.05 -21.07 16 6 N -0.69 -16.54 5.06 -438.18 -2.22 -18.76 16 7 C 0.15 4.72 3.03 45.91 0.14 4.86 16 8 H 0.06 2.42 7.38 -2.39 -0.02 2.40 16 9 C -0.07 -1.80 6.49 30.52 0.20 -1.60 16 10 C -0.11 -3.12 6.14 -19.60 -0.12 -3.24 16 11 C -0.11 -2.81 10.04 22.30 0.22 -2.59 16 12 C -0.12 -2.96 10.05 22.24 0.22 -2.74 16 13 C -0.13 -3.83 10.05 22.24 0.22 -3.60 16 14 C -0.11 -3.84 10.00 22.30 0.22 -3.62 16 15 C -0.12 -4.17 5.79 -19.59 -0.11 -4.28 16 16 C 0.21 7.45 3.23 44.92 0.15 7.59 16 17 H 0.08 2.68 7.74 -2.39 -0.02 2.66 16 18 N -0.72 -34.56 5.14 -323.28 -1.66 -36.22 16 19 C -0.23 -11.92 9.69 84.03 0.81 -11.11 16 20 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 22 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 23 Si 0.97 44.85 29.55 68.60 2.03 46.87 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 N -0.37 -8.79 3.04 -335.01 -1.02 -9.81 16 28 C 0.27 5.68 11.76 180.36 2.12 7.80 16 29 N -0.57 -14.56 11.19 -203.99 -2.28 -16.84 16 30 C 0.19 4.94 13.03 180.76 2.36 7.29 16 31 N -0.36 -10.50 12.70 -61.24 -0.78 -11.28 16 32 H 0.09 0.44 7.22 -2.39 -0.02 0.42 16 33 H 0.12 0.35 7.56 -2.39 -0.02 0.33 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.42 7.27 7.80 -92.71 -0.72 6.55 16 36 H 0.11 2.11 8.08 -2.39 -0.02 2.09 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.10 4.02 7.79 -2.91 -0.02 4.00 16 42 H 0.37 20.15 7.61 -92.71 -0.71 19.44 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.25 2.75 7.32 -2.91 -0.02 2.73 16 45 H 0.24 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -81.68 383.04 2.25 -79.43 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: -0.39 Total: 39.21 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 8.33 Total: 7.45 kcal Atomic # 7 Polarization: -144.22 SS G_CDS: -7.67 Total: -151.90 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.05 Total: -21.07 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -81.68 2.25 -79.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960258232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.884 kcal (2) G-P(sol) polarization free energy of solvation -81.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds