Wall clock time and date at job start Wed Apr 1 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46638 * 2 1 4 4 N 1.28529 * 124.44126 * 269.97207 * 3 2 1 5 5 C 1.31129 * 109.05469 * 179.73645 * 4 3 2 6 6 C 1.40925 * 105.78043 * 0.43499 * 5 4 3 7 7 C 1.47802 * 127.23946 * 179.84090 * 6 5 4 8 8 O 1.21555 * 119.99799 * 359.70088 * 7 6 5 9 9 N 1.34774 * 119.99674 * 179.70787 * 7 6 5 10 10 C 1.46505 * 119.99523 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.88465 * 31.48238 * 10 9 7 12 12 C 1.54345 * 110.82189 * 267.96900 * 10 9 7 13 13 C 1.51372 * 105.17135 * 268.12388 * 12 10 9 14 14 C 1.38499 * 130.39272 * 162.80990 * 13 12 10 15 15 C 1.38109 * 120.21350 * 180.02562 * 14 13 12 16 16 C 1.38248 * 119.93522 * 359.97438 * 15 14 13 17 17 C 1.38109 * 119.93786 * 0.02562 * 16 15 14 18 18 C 1.38217 * 109.75766 * 342.81221 * 13 12 10 19 19 C 1.51371 * 109.75968 * 359.97438 * 18 13 12 20 20 H 1.08998 * 110.38140 * 136.15419 * 19 18 13 21 21 N 1.46499 * 110.30471 * 258.26625 * 19 18 13 22 22 C 1.36935 * 119.99938 * 270.74774 * 21 19 18 23 23 H 1.07999 * 120.00083 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99632 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99535 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00187 * 0.27829 * 24 22 21 27 27 H 1.48501 * 109.46922 * 269.71949 * 26 24 22 28 28 H 1.48496 * 109.47354 * 29.72145 * 26 24 22 29 29 H 1.48501 * 109.47428 * 149.72253 * 26 24 22 30 30 N 1.28584 * 124.44466 * 90.00002 * 3 2 1 31 31 H 1.08991 * 109.47351 * 299.99760 * 1 2 3 32 32 H 1.09005 * 109.47352 * 60.00296 * 1 2 3 33 33 H 1.09008 * 109.46869 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47383 * 239.99902 * 2 1 3 35 35 H 1.08996 * 109.47165 * 119.99813 * 2 1 3 36 36 H 1.07999 * 127.11015 * 180.28992 * 5 4 3 37 37 H 0.97000 * 120.00796 * 359.97438 * 9 7 6 38 38 H 1.09000 * 110.30267 * 27.04537 * 12 10 9 39 39 H 1.09001 * 110.30448 * 149.10302 * 12 10 9 40 40 H 1.07994 * 119.89329 * 359.97438 * 14 13 12 41 41 H 1.07994 * 120.02970 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.03316 * 179.97438 * 16 15 14 43 43 H 1.07996 * 119.88975 * 179.97438 * 17 16 15 44 44 H 0.97004 * 119.99469 * 90.74843 * 21 19 18 45 45 H 0.97005 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2610 2.0665 -1.0600 5 6 2.6768 3.2604 -0.7121 6 6 2.6856 3.2676 0.6971 7 6 3.0799 4.3828 1.5834 8 8 3.4524 5.4365 1.1054 9 7 3.0265 4.2312 2.9215 10 6 3.4179 5.3364 3.8000 11 1 3.1940 6.2980 3.3381 12 6 4.9133 5.2403 4.1696 13 6 4.9527 4.4477 5.4587 14 6 6.0039 3.7913 6.0770 15 6 5.8012 3.1223 7.2681 16 6 4.5455 3.1076 7.8461 17 6 3.4959 3.7615 7.2311 18 6 3.6972 4.4330 6.0366 19 6 2.7284 5.2151 5.1758 20 1 1.7857 4.6764 5.0797 21 7 2.4977 6.5436 5.7486 22 6 1.4921 6.7315 6.6588 23 1 0.8693 5.9003 6.9548 24 6 1.2740 7.9902 7.2019 25 7 0.3070 8.1710 8.0765 26 14 2.3471 9.4293 6.6853 27 1 3.5207 9.5216 7.5905 28 1 2.8128 9.2237 5.2903 29 1 1.5609 10.6866 6.7644 30 7 2.2606 2.0670 1.0604 31 1 -0.3633 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.9570 4.0701 -1.3696 37 1 2.7290 3.3905 3.3031 38 1 5.4635 4.7174 3.3873 39 1 5.3298 6.2359 4.3232 40 1 6.9850 3.8020 5.6258 41 1 6.6231 2.6118 7.7478 42 1 4.3851 2.5845 8.7772 43 1 2.5152 3.7492 7.6831 44 1 3.0574 7.2901 5.4830 45 1 0.1543 9.0506 8.4558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960263313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:24 Heat of formation + Delta-G solvation = 121.825264 kcal Electronic energy + Delta-G solvation = -29077.548150 eV Core-core repulsion = 25098.211296 eV Total energy + Delta-G solvation = -3979.336853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.86138 -40.31220 -38.94858 -36.27968 -35.17883 -34.17665 -33.11363 -32.32242 -31.30570 -30.70920 -30.13173 -28.03716 -26.39800 -25.40996 -24.12953 -22.75673 -22.11211 -21.78708 -20.83923 -20.25053 -20.05372 -18.21668 -17.67966 -17.24612 -16.80862 -16.26144 -15.73617 -15.34799 -15.09790 -14.75452 -14.55296 -14.52420 -14.38746 -13.97112 -13.86474 -13.24190 -13.06358 -12.98951 -12.82120 -12.67487 -12.63126 -12.12289 -11.90265 -11.78852 -11.59746 -11.29955 -11.22405 -11.15711 -10.89565 -10.69662 -10.64098 -10.43399 -10.21855 -10.17784 -9.67934 -9.66080 -9.12892 -8.96611 -8.39006 -8.18291 -7.40209 -5.84114 -3.21479 1.14754 1.75127 1.76779 1.81843 1.86654 3.05350 3.22041 3.36504 3.39640 3.44386 3.70991 4.16285 4.34355 4.37089 4.54311 4.62030 4.64123 4.72186 4.88308 4.94767 5.08143 5.20426 5.26093 5.36705 5.40755 5.41598 5.45303 5.48787 5.56777 5.59422 5.72131 5.77625 5.88075 5.98975 6.06042 6.15156 6.25923 6.29364 6.41634 6.53117 6.64181 6.82677 6.92161 7.14898 7.41498 7.48363 7.88023 7.92210 8.16366 8.33307 9.09161 9.81734 9.99047 11.33227 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.003288 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.519101 B = 8512.840713 C = 9527.101490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.142 5.142 4 N -0.292 5.292 5 C 0.034 3.966 6 C -0.043 4.043 7 C 0.610 3.390 8 O -0.527 6.527 9 N -0.695 5.695 10 C 0.132 3.868 11 H 0.112 0.888 12 C -0.088 4.088 13 C -0.099 4.099 14 C -0.115 4.115 15 C -0.129 4.129 16 C -0.127 4.127 17 C -0.084 4.084 18 C -0.095 4.095 19 C 0.213 3.787 20 H 0.074 0.926 21 N -0.728 5.728 22 C -0.248 4.248 23 H 0.093 0.907 24 C 0.012 3.988 25 N -0.928 5.928 26 Si 0.880 3.120 27 H -0.283 1.283 28 H -0.274 1.274 29 H -0.289 1.289 30 N -0.247 5.247 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.208 0.792 37 H 0.407 0.593 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.365 0.635 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.458 -18.321 -14.284 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.045 5.045 4 N -0.131 5.131 5 C -0.149 4.149 6 C -0.206 4.206 7 C 0.393 3.607 8 O -0.401 6.401 9 N -0.346 5.346 10 C 0.027 3.973 11 H 0.130 0.870 12 C -0.127 4.127 13 C -0.100 4.100 14 C -0.133 4.133 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.103 4.103 18 C -0.098 4.098 19 C 0.102 3.898 20 H 0.092 0.908 21 N -0.369 5.369 22 C -0.377 4.377 23 H 0.110 0.890 24 C -0.185 4.185 25 N -0.574 5.574 26 Si 0.710 3.290 27 H -0.209 1.209 28 H -0.200 1.200 29 H -0.215 1.215 30 N -0.095 5.095 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.225 0.775 37 H 0.243 0.757 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.199 0.801 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.025 -18.808 -14.457 24.475 hybrid contribution 0.966 1.529 0.143 1.814 sum 6.991 -17.279 -14.315 23.502 Atomic orbital electron populations 1.22202 0.92767 1.04114 1.03995 1.22111 0.96334 0.74076 1.06110 1.48276 1.43593 1.13491 0.99159 1.74001 1.17935 1.05574 1.15632 1.24848 1.01294 0.95097 0.93692 1.23108 1.09096 0.93547 0.94856 1.16599 0.77657 0.84897 0.81562 1.90823 1.47410 1.26539 1.75316 1.45685 1.66435 1.17580 1.04870 1.22003 0.93750 0.90879 0.90717 0.87004 1.21436 0.96698 1.00105 0.94424 1.20507 0.94187 0.98364 0.96906 1.20468 0.97750 0.99055 0.96031 1.20874 0.97020 1.00828 0.96061 1.21002 0.93112 1.00630 0.99730 1.20676 0.99289 0.96069 0.94267 1.21598 0.96709 0.95440 0.96100 1.19766 0.95142 0.87403 0.87494 0.90842 1.42596 1.38945 1.03737 1.51605 1.19001 1.06994 0.96262 1.15473 0.88959 1.24637 0.98108 0.97199 0.98516 1.69695 1.32672 1.22839 1.32241 0.86613 0.80501 0.83368 0.78522 1.20942 1.19991 1.21532 1.74384 1.14721 1.04613 1.15812 0.91070 0.91315 0.89386 0.87112 0.87019 0.77547 0.75723 0.90711 0.89442 0.87142 0.86737 0.86546 0.86142 0.80125 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.13 0.74 7.24 -4.04 -0.03 0.71 16 3 N -0.14 -1.44 3.94 -10.61 -0.04 -1.48 16 4 N -0.29 -3.26 12.01 30.90 0.37 -2.89 16 5 C 0.03 0.40 12.04 -16.84 -0.20 0.20 16 6 C -0.04 -0.56 7.21 -82.68 -0.60 -1.16 16 7 C 0.61 9.08 7.83 -12.35 -0.10 8.98 16 8 O -0.53 -9.16 16.60 5.32 0.09 -9.07 16 9 N -0.70 -9.95 5.11 -53.38 -0.27 -10.22 16 10 C 0.13 2.15 3.03 -66.51 -0.20 1.94 16 11 H 0.11 2.00 7.48 -51.93 -0.39 1.61 16 12 C -0.09 -1.34 6.49 -26.85 -0.17 -1.51 16 13 C -0.10 -1.59 6.14 -104.20 -0.64 -2.22 16 14 C -0.11 -1.67 10.04 -39.53 -0.40 -2.07 16 15 C -0.13 -1.80 10.05 -39.63 -0.40 -2.20 16 16 C -0.13 -1.90 10.05 -39.63 -0.40 -2.29 16 17 C -0.08 -1.46 10.04 -39.53 -0.40 -1.86 16 18 C -0.10 -1.68 5.77 -104.20 -0.60 -2.29 16 19 C 0.21 3.98 3.13 -68.04 -0.21 3.76 16 20 H 0.07 1.39 8.03 -51.93 -0.42 0.98 16 21 N -0.73 -16.67 4.93 -53.53 -0.26 -16.94 16 22 C -0.25 -6.73 10.44 -15.06 -0.16 -6.89 16 23 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 24 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 25 N -0.93 -28.52 13.97 55.49 0.78 -27.74 16 26 Si 0.88 21.89 27.74 -169.99 -4.71 17.18 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.27 -6.42 6.52 56.52 0.37 -6.05 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 N -0.25 -2.96 11.84 33.43 0.40 -2.56 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.21 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.41 5.32 8.43 -40.82 -0.34 4.97 16 38 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.37 8.34 5.69 -40.82 -0.23 8.11 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -33.87 385.31 -8.12 -41.99 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -6.04 Total: 13.05 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -4.22 Total: -7.12 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.96 Total: -61.83 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.87 -8.12 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960263313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.812 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds