Wall clock time and date at job start Wed Apr 1 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46638 * 2 1 4 4 N 1.28529 * 124.44126 * 269.97207 * 3 2 1 5 5 C 1.31129 * 109.05469 * 179.73645 * 4 3 2 6 6 C 1.40925 * 105.78043 * 0.43499 * 5 4 3 7 7 C 1.47802 * 127.23946 * 179.84090 * 6 5 4 8 8 O 1.21555 * 119.99799 * 359.70088 * 7 6 5 9 9 N 1.34774 * 119.99674 * 179.70787 * 7 6 5 10 10 C 1.46505 * 119.99523 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.88465 * 31.48238 * 10 9 7 12 12 C 1.54345 * 110.82189 * 267.96900 * 10 9 7 13 13 C 1.51372 * 105.17135 * 268.12388 * 12 10 9 14 14 C 1.38499 * 130.39272 * 162.80990 * 13 12 10 15 15 C 1.38109 * 120.21350 * 180.02562 * 14 13 12 16 16 C 1.38248 * 119.93522 * 359.97438 * 15 14 13 17 17 C 1.38109 * 119.93786 * 0.02562 * 16 15 14 18 18 C 1.38217 * 109.75766 * 342.81221 * 13 12 10 19 19 C 1.51371 * 109.75968 * 359.97438 * 18 13 12 20 20 H 1.08998 * 110.38140 * 136.15419 * 19 18 13 21 21 N 1.46499 * 110.30471 * 258.26625 * 19 18 13 22 22 C 1.36935 * 119.99938 * 270.74774 * 21 19 18 23 23 H 1.07999 * 120.00083 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99632 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99535 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00187 * 0.27829 * 24 22 21 27 27 H 1.48501 * 109.46922 * 269.71949 * 26 24 22 28 28 H 1.48496 * 109.47354 * 29.72145 * 26 24 22 29 29 H 1.48501 * 109.47428 * 149.72253 * 26 24 22 30 30 N 1.28584 * 124.44466 * 90.00002 * 3 2 1 31 31 H 1.08991 * 109.47351 * 299.99760 * 1 2 3 32 32 H 1.09005 * 109.47352 * 60.00296 * 1 2 3 33 33 H 1.09008 * 109.46869 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47383 * 239.99902 * 2 1 3 35 35 H 1.08996 * 109.47165 * 119.99813 * 2 1 3 36 36 H 1.07999 * 127.11015 * 180.28992 * 5 4 3 37 37 H 0.97000 * 120.00796 * 359.97438 * 9 7 6 38 38 H 1.09000 * 110.30267 * 27.04537 * 12 10 9 39 39 H 1.09001 * 110.30448 * 149.10302 * 12 10 9 40 40 H 1.07994 * 119.89329 * 359.97438 * 14 13 12 41 41 H 1.07994 * 120.02970 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.03316 * 179.97438 * 16 15 14 43 43 H 1.07996 * 119.88975 * 179.97438 * 17 16 15 44 44 H 0.97004 * 119.99469 * 90.74843 * 21 19 18 45 45 H 0.97005 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2610 2.0665 -1.0600 5 6 2.6768 3.2604 -0.7121 6 6 2.6856 3.2676 0.6971 7 6 3.0799 4.3828 1.5834 8 8 3.4524 5.4365 1.1054 9 7 3.0265 4.2312 2.9215 10 6 3.4179 5.3364 3.8000 11 1 3.1940 6.2980 3.3381 12 6 4.9133 5.2403 4.1696 13 6 4.9527 4.4477 5.4587 14 6 6.0039 3.7913 6.0770 15 6 5.8012 3.1223 7.2681 16 6 4.5455 3.1076 7.8461 17 6 3.4959 3.7615 7.2311 18 6 3.6972 4.4330 6.0366 19 6 2.7284 5.2151 5.1758 20 1 1.7857 4.6764 5.0797 21 7 2.4977 6.5436 5.7486 22 6 1.4921 6.7315 6.6588 23 1 0.8693 5.9003 6.9548 24 6 1.2740 7.9902 7.2019 25 7 0.3070 8.1710 8.0765 26 14 2.3471 9.4293 6.6853 27 1 3.5207 9.5216 7.5905 28 1 2.8128 9.2237 5.2903 29 1 1.5609 10.6866 6.7644 30 7 2.2606 2.0670 1.0604 31 1 -0.3633 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.9570 4.0701 -1.3696 37 1 2.7290 3.3905 3.3031 38 1 5.4635 4.7174 3.3873 39 1 5.3298 6.2359 4.3232 40 1 6.9850 3.8020 5.6258 41 1 6.6231 2.6118 7.7478 42 1 4.3851 2.5845 8.7772 43 1 2.5152 3.7492 7.6831 44 1 3.0574 7.2901 5.4830 45 1 0.1543 9.0506 8.4558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960263313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:23 Heat of formation + Delta-G solvation = 98.465489 kcal Electronic energy + Delta-G solvation = -29078.561105 eV Core-core repulsion = 25098.211296 eV Total energy + Delta-G solvation = -3980.349809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.72910 -41.60216 -40.16961 -37.63374 -35.86182 -35.81843 -34.32912 -33.50732 -32.99670 -31.62228 -31.42590 -29.26364 -27.90470 -26.31969 -25.09782 -24.48098 -23.30429 -22.56684 -21.99104 -21.66409 -21.27534 -19.89019 -18.90524 -18.22237 -17.69338 -17.53104 -17.09475 -16.45545 -16.29547 -16.07458 -15.84871 -15.72008 -15.52654 -15.29496 -15.01711 -14.70462 -14.34749 -14.28071 -14.01022 -13.71485 -13.57411 -13.13561 -13.07210 -13.00168 -12.84478 -12.63916 -12.38860 -12.35681 -12.24591 -12.08362 -12.03191 -11.80479 -11.68563 -11.54247 -11.42707 -11.05404 -10.56747 -10.25265 -9.65361 -9.48819 -9.33317 -8.04584 -5.39580 0.17266 0.52843 0.57770 0.86474 1.17524 1.37729 1.39341 1.46054 1.91217 2.10930 2.46149 2.83226 2.91431 3.26009 3.34534 3.63120 3.66834 3.83587 3.91324 3.92700 4.01460 4.04351 4.14924 4.24757 4.25764 4.30701 4.44262 4.55987 4.64404 4.68228 4.73245 4.74519 4.79226 4.86431 4.93967 4.96149 5.15848 5.19245 5.28094 5.35008 5.54803 5.63567 5.69561 5.71830 5.87262 6.17380 6.21083 6.32614 6.94998 7.01735 7.07388 7.74332 7.93994 9.16130 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.003288 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.519101 B = 8512.840713 C = 9527.101490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.131 5.131 4 N -0.296 5.296 5 C 0.031 3.969 6 C -0.066 4.066 7 C 0.614 3.386 8 O -0.555 6.555 9 N -0.689 5.689 10 C 0.142 3.858 11 H 0.096 0.904 12 C -0.081 4.081 13 C -0.101 4.101 14 C -0.114 4.114 15 C -0.120 4.120 16 C -0.128 4.128 17 C -0.109 4.109 18 C -0.118 4.118 19 C 0.211 3.789 20 H 0.059 0.941 21 N -0.733 5.733 22 C -0.226 4.226 23 H 0.061 0.939 24 C -0.055 4.055 25 N -0.978 5.978 26 Si 0.944 3.056 27 H -0.280 1.280 28 H -0.252 1.252 29 H -0.295 1.295 30 N -0.251 5.251 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.224 0.776 37 H 0.413 0.587 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.100 0.900 44 H 0.367 0.633 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.206 -20.223 -15.644 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.002 3.998 3 N -0.036 5.036 4 N -0.135 5.135 5 C -0.151 4.151 6 C -0.227 4.227 7 C 0.398 3.602 8 O -0.431 6.431 9 N -0.339 5.339 10 C 0.036 3.964 11 H 0.114 0.886 12 C -0.119 4.119 13 C -0.101 4.101 14 C -0.132 4.132 15 C -0.138 4.138 16 C -0.146 4.146 17 C -0.128 4.128 18 C -0.121 4.121 19 C 0.101 3.899 20 H 0.077 0.923 21 N -0.375 5.375 22 C -0.357 4.357 23 H 0.079 0.921 24 C -0.247 4.247 25 N -0.628 5.628 26 Si 0.772 3.228 27 H -0.206 1.206 28 H -0.176 1.176 29 H -0.221 1.221 30 N -0.101 5.101 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.240 0.760 37 H 0.250 0.750 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.156 0.844 43 H 0.118 0.882 44 H 0.201 0.799 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.806 -20.774 -15.855 27.577 hybrid contribution 0.061 1.836 0.550 1.918 sum 8.866 -18.937 -15.305 25.913 Atomic orbital electron populations 1.22183 0.92254 1.05580 1.02513 1.22656 0.96731 0.72161 1.08279 1.48845 1.41927 1.14401 0.98467 1.74015 1.18086 1.05517 1.15917 1.25162 1.00915 0.95724 0.93333 1.22835 1.11063 0.93637 0.95155 1.16762 0.76918 0.85016 0.81501 1.90799 1.48798 1.27786 1.75740 1.45560 1.66377 1.17268 1.04737 1.21697 0.94555 0.90831 0.89279 0.88609 1.21385 0.95488 1.00491 0.94535 1.20640 0.93846 0.98580 0.97072 1.20859 0.98488 0.97845 0.96024 1.21314 0.97318 0.99629 0.95501 1.21278 0.92966 0.99987 1.00397 1.20743 0.99507 0.97729 0.94822 1.21364 0.97114 0.97008 0.96589 1.19862 0.95394 0.85506 0.89100 0.92260 1.42521 1.38163 1.05760 1.51060 1.18923 1.06784 0.95102 1.14843 0.92074 1.25376 0.99916 1.00085 0.99303 1.69862 1.35169 1.23281 1.34528 0.85564 0.78538 0.79434 0.79275 1.20604 1.17608 1.22146 1.74346 1.14663 1.04467 1.16618 0.92886 0.92355 0.86462 0.84663 0.85209 0.75966 0.75008 0.89153 0.89040 0.84158 0.83097 0.84368 0.88207 0.79893 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 71.98 0.74 -0.62 16 2 C 0.12 1.04 7.24 86.38 0.63 1.67 16 3 N -0.13 -2.45 3.94 -187.49 -0.74 -3.19 16 4 N -0.30 -6.15 12.01 -56.17 -0.67 -6.83 16 5 C 0.03 0.70 12.04 85.46 1.03 1.73 16 6 C -0.07 -1.67 7.21 42.24 0.30 -1.37 16 7 C 0.61 18.11 7.83 86.77 0.68 18.79 16 8 O -0.55 -19.21 16.60 -3.89 -0.06 -19.27 16 9 N -0.69 -19.64 5.11 -441.09 -2.25 -21.89 16 10 C 0.14 4.61 3.03 45.91 0.14 4.75 16 11 H 0.10 3.45 7.48 -2.39 -0.02 3.43 16 12 C -0.08 -2.31 6.49 30.52 0.20 -2.11 16 13 C -0.10 -3.04 6.14 -19.59 -0.12 -3.16 16 14 C -0.11 -2.90 10.04 22.30 0.22 -2.68 16 15 C -0.12 -2.88 10.05 22.24 0.22 -2.66 16 16 C -0.13 -3.60 10.05 22.24 0.22 -3.37 16 17 C -0.11 -3.82 10.04 22.30 0.22 -3.60 16 18 C -0.12 -4.17 5.77 -19.59 -0.11 -4.28 16 19 C 0.21 8.05 3.13 44.92 0.14 8.19 16 20 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 21 N -0.73 -34.19 4.93 -323.28 -1.59 -35.78 16 22 C -0.23 -12.73 10.44 84.03 0.88 -11.85 16 23 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 24 C -0.05 -3.23 5.50 84.86 0.47 -2.76 16 25 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 26 Si 0.94 45.89 27.74 68.60 1.90 47.79 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 28 H -0.25 -11.13 6.52 99.48 0.65 -10.49 16 29 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 30 N -0.25 -5.76 11.84 -48.16 -0.57 -6.33 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.12 0.27 8.14 -2.38 -0.02 0.26 16 34 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.22 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.41 10.80 8.43 -92.71 -0.78 10.02 16 38 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 39 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.10 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.37 16.67 5.69 -92.71 -0.53 16.14 16 45 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -75.52 385.31 1.84 -73.68 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -0.33 Total: 37.34 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 5.86 Total: -3.33 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -5.53 Total: -136.21 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.06 Total: -19.27 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -75.52 1.84 -73.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960263313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.150 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds