Wall clock time and date at job start Wed Apr 1 2020 00:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47156 * 2 1 4 4 N 1.28716 * 126.03693 * 272.65832 * 3 2 1 5 5 N 1.28506 * 110.63474 * 180.30069 * 4 3 2 6 6 C 1.33319 * 109.44462 * 359.71959 * 5 4 3 7 7 C 1.37008 * 106.36865 * 359.97438 * 6 5 4 8 8 C 1.47237 * 127.18835 * 180.02562 * 7 6 5 9 9 O 1.21617 * 119.99725 * 185.02512 * 8 7 6 10 10 N 1.34777 * 119.99633 * 5.02774 * 8 7 6 11 11 C 1.46507 * 119.99305 * 174.63321 * 10 8 7 12 12 H 1.08990 * 110.73123 * 31.59069 * 11 10 8 13 13 C 1.54343 * 110.98688 * 268.06195 * 11 10 8 14 14 C 1.51368 * 105.17634 * 268.04873 * 13 11 10 15 15 C 1.38489 * 130.39692 * 162.81544 * 14 13 11 16 16 C 1.38109 * 120.21830 * 179.97438 * 15 14 13 17 17 C 1.38254 * 119.93127 * 0.02562 * 16 15 14 18 18 C 1.38099 * 119.93494 * 359.97438 * 17 16 15 19 19 C 1.38299 * 120.28868 * 0.03361 * 18 17 16 20 20 C 1.51365 * 130.56139 * 180.02562 * 19 18 17 21 21 H 1.09006 * 110.29732 * 316.12993 * 20 19 18 22 22 N 1.46495 * 110.30406 * 78.17694 * 20 19 18 23 23 C 1.36932 * 120.00397 * 272.22715 * 22 20 19 24 24 H 1.08004 * 119.99874 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00040 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00146 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99909 * 179.72810 * 25 23 22 28 28 H 1.48500 * 109.47069 * 180.27568 * 27 25 23 29 29 H 1.48502 * 109.47094 * 300.27699 * 27 25 23 30 30 H 1.48495 * 109.47194 * 60.27604 * 27 25 23 31 31 H 1.09007 * 109.47010 * 59.99797 * 1 2 3 32 32 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47433 * 300.00245 * 1 2 3 34 34 H 1.09007 * 109.47124 * 239.99924 * 2 1 3 35 35 H 1.08998 * 109.46814 * 120.00319 * 2 1 3 36 36 H 1.08000 * 126.81458 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00436 * 354.62621 * 10 8 7 38 38 H 1.09000 * 110.30588 * 26.97494 * 13 11 10 39 39 H 1.09005 * 110.30205 * 149.12404 * 13 11 10 40 40 H 1.08003 * 119.89535 * 0.02562 * 15 14 13 41 41 H 1.07994 * 120.03279 * 179.97438 * 16 15 14 42 42 H 1.08004 * 120.02971 * 179.97438 * 17 16 15 43 43 H 1.08007 * 119.89037 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00117 * 92.22839 * 22 20 19 45 45 H 0.97001 * 119.99755 * 359.72040 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2252 2.1112 -1.0397 5 7 2.6591 3.2719 -0.6991 6 6 2.7470 3.3405 0.6294 7 6 2.3319 2.1253 1.1071 8 6 2.2468 1.7047 2.5156 9 8 1.9453 0.5591 2.7908 10 7 2.5029 2.5893 3.4996 11 6 2.3046 2.2053 4.8995 12 1 2.4986 1.1419 5.0391 13 6 0.8831 2.5710 5.3770 14 6 1.0094 3.9570 5.9722 15 6 0.0386 4.9012 6.2620 16 6 0.3940 6.1174 6.8116 17 6 1.7230 6.3942 7.0733 18 6 2.6925 5.4539 6.7850 19 6 2.3403 4.2351 6.2344 20 6 3.1955 3.0527 5.8325 21 1 4.0845 3.3923 5.3008 22 7 3.5770 2.2760 7.0145 23 6 4.7062 2.6057 7.7153 24 1 5.3155 3.4387 7.3968 25 6 5.0674 1.8700 8.8357 26 7 4.3246 0.8553 9.2242 27 14 6.6121 2.3151 9.7873 28 1 6.7771 1.3796 10.9286 29 1 7.7917 2.2154 8.8908 30 1 6.4953 3.7043 10.2989 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0795 4.1861 1.2132 37 1 2.8186 3.4800 3.2811 38 1 0.1923 2.5830 4.5339 39 1 0.5448 1.8636 6.1341 40 1 -0.9999 4.6856 6.0583 41 1 -0.3655 6.8516 7.0360 42 1 2.0027 7.3449 7.5027 43 1 3.7305 5.6708 6.9901 44 1 3.0296 1.5281 7.3009 45 1 3.5227 0.6240 8.7299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960265600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:21 Heat of formation + Delta-G solvation = 106.932409 kcal Electronic energy + Delta-G solvation = -29452.178812 eV Core-core repulsion = 25472.196156 eV Total energy + Delta-G solvation = -3979.982656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.53221 -40.42467 -39.10570 -36.45961 -35.68791 -34.40535 -33.08422 -31.42446 -31.25376 -31.07629 -29.71193 -28.02153 -26.09176 -25.11346 -24.08854 -23.26871 -22.64876 -21.78567 -20.86506 -20.36056 -20.22916 -18.31779 -17.62208 -17.12136 -16.66365 -16.22686 -16.04154 -15.22179 -15.18607 -14.93559 -14.65861 -14.46741 -14.33639 -14.11507 -13.74517 -13.38105 -13.28686 -13.14719 -13.02322 -12.82065 -12.61254 -12.28954 -11.96804 -11.77400 -11.53796 -11.23612 -11.21865 -10.92301 -10.79389 -10.78780 -10.49241 -10.47718 -10.27564 -10.07179 -9.75567 -9.42751 -9.20283 -9.05939 -8.46421 -8.23679 -7.24247 -6.22969 -3.25408 0.70687 1.68537 1.75451 1.82675 2.08210 2.86918 2.90582 3.45676 3.48358 3.65912 4.04285 4.09545 4.21647 4.44473 4.50586 4.53587 4.62248 4.71436 4.85730 4.87092 5.06533 5.19619 5.20090 5.30537 5.33247 5.36701 5.45223 5.50621 5.59043 5.65390 5.68776 5.71382 5.80982 5.90431 5.95205 6.05157 6.15396 6.17869 6.32896 6.43545 6.52563 6.76255 6.84909 7.07655 7.23243 7.35311 7.65911 7.86766 8.11800 8.61229 9.02565 9.89636 10.01305 11.24331 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003342 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.427609 B = 8375.199215 C = 9643.623030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.251 5.251 4 N -0.061 5.061 5 N -0.275 5.275 6 C 0.001 3.999 7 C -0.066 4.066 8 C 0.597 3.403 9 O -0.533 6.533 10 N -0.693 5.693 11 C 0.136 3.864 12 H 0.113 0.887 13 C -0.086 4.086 14 C -0.100 4.100 15 C -0.113 4.113 16 C -0.130 4.130 17 C -0.125 4.125 18 C -0.088 4.088 19 C -0.095 4.095 20 C 0.213 3.787 21 H 0.066 0.934 22 N -0.714 5.714 23 C -0.337 4.337 24 H 0.067 0.933 25 C -0.037 4.037 26 N -0.936 5.936 27 Si 1.079 2.921 28 H -0.284 1.284 29 H -0.293 1.293 30 H -0.294 1.294 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.198 0.802 37 H 0.404 0.596 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.371 0.629 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 4.597 -15.057 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.019 4.019 3 N -0.049 5.049 4 N -0.042 5.042 5 N -0.137 5.137 6 C -0.160 4.160 7 C -0.200 4.200 8 C 0.380 3.620 9 O -0.409 6.409 10 N -0.343 5.343 11 C 0.031 3.969 12 H 0.131 0.869 13 C -0.124 4.124 14 C -0.101 4.101 15 C -0.132 4.132 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.107 4.107 19 C -0.099 4.099 20 C 0.102 3.898 21 H 0.084 0.916 22 N -0.354 5.354 23 C -0.467 4.467 24 H 0.085 0.915 25 C -0.235 4.235 26 N -0.580 5.580 27 Si 0.909 3.091 28 H -0.209 1.209 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.215 0.785 37 H 0.239 0.761 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.205 0.795 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.668 3.496 -15.110 17.301 hybrid contribution -1.083 0.731 0.006 1.307 sum -8.751 4.227 -15.103 17.960 Atomic orbital electron populations 1.22092 0.92628 1.04156 1.03330 1.22478 0.96822 0.75629 1.06984 1.47893 1.40096 1.13528 1.03357 1.78247 1.15594 0.98574 1.11767 1.74899 1.15643 1.10643 1.12519 1.23923 1.02696 0.97299 0.92043 1.21988 1.12723 0.94300 0.91038 1.16653 0.77586 0.85254 0.82480 1.90801 1.48499 1.18041 1.83567 1.45527 1.66799 1.16185 1.05788 1.22014 0.95032 1.01505 0.78397 0.86886 1.21411 0.96997 0.93881 1.00158 1.20545 0.94145 0.95381 1.00046 1.20476 0.98198 0.93643 1.00844 1.20875 0.96123 0.96872 1.00962 1.20997 0.93096 0.99320 1.00935 1.20570 0.99540 0.92686 0.97871 1.21693 0.95760 0.94950 0.97464 1.19738 0.93812 0.87729 0.88550 0.91614 1.42258 1.28906 1.34733 1.29528 1.19979 1.01564 1.15219 1.09937 0.91467 1.25798 1.04892 0.96164 0.96658 1.70891 1.16309 1.28457 1.42333 0.83264 0.74325 0.75321 0.76187 1.20940 1.22074 1.22124 0.91586 0.89406 0.91431 0.87499 0.85583 0.78500 0.76084 0.90936 0.89281 0.87129 0.86673 0.86553 0.86464 0.79508 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.10 0.89 6.73 -4.04 -0.03 0.86 16 3 N -0.25 -2.91 3.39 -57.37 -0.19 -3.11 16 4 N -0.06 -0.79 13.14 60.35 0.79 0.00 16 5 N -0.27 -3.61 12.35 30.47 0.38 -3.24 16 6 C 0.00 0.01 11.55 -17.35 -0.20 -0.19 16 7 C -0.07 -0.78 6.98 -82.33 -0.57 -1.36 16 8 C 0.60 7.77 7.80 -12.60 -0.10 7.67 16 9 O -0.53 -8.18 14.40 5.26 0.08 -8.10 16 10 N -0.69 -8.54 5.11 -53.57 -0.27 -8.82 16 11 C 0.14 2.06 3.07 -66.52 -0.20 1.85 16 12 H 0.11 1.95 7.39 -51.93 -0.38 1.57 16 13 C -0.09 -1.24 6.49 -26.85 -0.17 -1.42 16 14 C -0.10 -1.55 6.14 -104.12 -0.64 -2.19 16 15 C -0.11 -1.61 10.04 -39.54 -0.40 -2.00 16 16 C -0.13 -1.76 10.05 -39.62 -0.40 -2.16 16 17 C -0.13 -1.81 10.05 -39.63 -0.40 -2.21 16 18 C -0.09 -1.47 10.03 -39.61 -0.40 -1.86 16 19 C -0.09 -1.63 5.78 -104.19 -0.60 -2.23 16 20 C 0.21 3.84 3.12 -68.05 -0.21 3.63 16 21 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 22 N -0.71 -16.47 5.14 -53.54 -0.28 -16.74 16 23 C -0.34 -8.82 9.96 -15.06 -0.15 -8.97 16 24 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 25 C -0.04 -1.01 5.50 -17.43 -0.10 -1.11 16 26 N -0.94 -27.82 13.70 55.49 0.76 -27.06 16 27 Si 1.08 24.90 29.92 -169.99 -5.09 19.82 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.13 1.22 6.24 -51.93 -0.32 0.90 16 36 H 0.20 1.45 7.56 -52.49 -0.40 1.05 16 37 H 0.40 4.07 7.69 -40.82 -0.31 3.76 16 38 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 44 H 0.37 8.95 6.64 -40.82 -0.27 8.68 16 45 H 0.26 7.49 6.77 -40.82 -0.28 7.21 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -32.89 381.15 -8.08 -40.97 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.82 Total: 13.07 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -4.19 Total: -12.54 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 1.19 Total: -58.96 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.89 -8.08 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960265600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.906 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds