Wall clock time and date at job start Wed Apr 1 2020 00:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47156 * 2 1 4 4 N 1.28716 * 126.03693 * 272.65832 * 3 2 1 5 5 N 1.28506 * 110.63474 * 180.30069 * 4 3 2 6 6 C 1.33319 * 109.44462 * 359.71959 * 5 4 3 7 7 C 1.37008 * 106.36865 * 359.97438 * 6 5 4 8 8 C 1.47237 * 127.18835 * 180.02562 * 7 6 5 9 9 O 1.21617 * 119.99725 * 185.02512 * 8 7 6 10 10 N 1.34777 * 119.99633 * 5.02774 * 8 7 6 11 11 C 1.46507 * 119.99305 * 174.63321 * 10 8 7 12 12 H 1.08990 * 110.73123 * 31.59069 * 11 10 8 13 13 C 1.54343 * 110.98688 * 268.06195 * 11 10 8 14 14 C 1.51368 * 105.17634 * 268.04873 * 13 11 10 15 15 C 1.38489 * 130.39692 * 162.81544 * 14 13 11 16 16 C 1.38109 * 120.21830 * 179.97438 * 15 14 13 17 17 C 1.38254 * 119.93127 * 0.02562 * 16 15 14 18 18 C 1.38099 * 119.93494 * 359.97438 * 17 16 15 19 19 C 1.38299 * 120.28868 * 0.03361 * 18 17 16 20 20 C 1.51365 * 130.56139 * 180.02562 * 19 18 17 21 21 H 1.09006 * 110.29732 * 316.12993 * 20 19 18 22 22 N 1.46495 * 110.30406 * 78.17694 * 20 19 18 23 23 C 1.36932 * 120.00397 * 272.22715 * 22 20 19 24 24 H 1.08004 * 119.99874 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00040 * 179.97438 * 23 22 20 26 26 N 1.31615 * 120.00146 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99909 * 179.72810 * 25 23 22 28 28 H 1.48500 * 109.47069 * 180.27568 * 27 25 23 29 29 H 1.48502 * 109.47094 * 300.27699 * 27 25 23 30 30 H 1.48495 * 109.47194 * 60.27604 * 27 25 23 31 31 H 1.09007 * 109.47010 * 59.99797 * 1 2 3 32 32 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47433 * 300.00245 * 1 2 3 34 34 H 1.09007 * 109.47124 * 239.99924 * 2 1 3 35 35 H 1.08998 * 109.46814 * 120.00319 * 2 1 3 36 36 H 1.08000 * 126.81458 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00436 * 354.62621 * 10 8 7 38 38 H 1.09000 * 110.30588 * 26.97494 * 13 11 10 39 39 H 1.09005 * 110.30205 * 149.12404 * 13 11 10 40 40 H 1.08003 * 119.89535 * 0.02562 * 15 14 13 41 41 H 1.07994 * 120.03279 * 179.97438 * 16 15 14 42 42 H 1.08004 * 120.02971 * 179.97438 * 17 16 15 43 43 H 1.08007 * 119.89037 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00117 * 92.22839 * 22 20 19 45 45 H 0.97001 * 119.99755 * 359.72040 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2252 2.1112 -1.0397 5 7 2.6591 3.2719 -0.6991 6 6 2.7470 3.3405 0.6294 7 6 2.3319 2.1253 1.1071 8 6 2.2468 1.7047 2.5156 9 8 1.9453 0.5591 2.7908 10 7 2.5029 2.5893 3.4996 11 6 2.3046 2.2053 4.8995 12 1 2.4986 1.1419 5.0391 13 6 0.8831 2.5710 5.3770 14 6 1.0094 3.9570 5.9722 15 6 0.0386 4.9012 6.2620 16 6 0.3940 6.1174 6.8116 17 6 1.7230 6.3942 7.0733 18 6 2.6925 5.4539 6.7850 19 6 2.3403 4.2351 6.2344 20 6 3.1955 3.0527 5.8325 21 1 4.0845 3.3923 5.3008 22 7 3.5770 2.2760 7.0145 23 6 4.7062 2.6057 7.7153 24 1 5.3155 3.4387 7.3968 25 6 5.0674 1.8700 8.8357 26 7 4.3246 0.8553 9.2242 27 14 6.6121 2.3151 9.7873 28 1 6.7771 1.3796 10.9286 29 1 7.7917 2.2154 8.8908 30 1 6.4953 3.7043 10.2989 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0795 4.1861 1.2132 37 1 2.8186 3.4800 3.2811 38 1 0.1923 2.5830 4.5339 39 1 0.5448 1.8636 6.1341 40 1 -0.9999 4.6856 6.0583 41 1 -0.3655 6.8516 7.0360 42 1 2.0027 7.3449 7.5027 43 1 3.7305 5.6708 6.9901 44 1 3.0296 1.5281 7.3009 45 1 3.5227 0.6240 8.7299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960265600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:20 Heat of formation + Delta-G solvation = 85.356166 kcal Electronic energy + Delta-G solvation = -29453.114428 eV Core-core repulsion = 25472.196156 eV Total energy + Delta-G solvation = -3980.918272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.45410 -41.64041 -40.24977 -37.71299 -36.61370 -35.98222 -34.36122 -32.78073 -32.37840 -31.84863 -31.22791 -29.20537 -27.54683 -26.09828 -25.29235 -24.77450 -23.70798 -22.86298 -21.93876 -21.58649 -21.42411 -19.51536 -19.29149 -18.07744 -17.64796 -17.43429 -17.34423 -16.38255 -16.22021 -16.11555 -15.90305 -15.73679 -15.64366 -15.36835 -15.01729 -14.86830 -14.41118 -14.27778 -14.01055 -13.99031 -13.27221 -13.23460 -13.06284 -12.94850 -12.75745 -12.64227 -12.60835 -12.27424 -12.23603 -12.04920 -11.91187 -11.70471 -11.44235 -11.34127 -11.28613 -10.98361 -10.72153 -10.33841 -9.66892 -9.45939 -9.16422 -8.37977 -5.34239 -0.23784 0.50534 0.56277 0.95125 1.14194 1.58974 1.68121 1.83452 1.85276 1.87541 2.70194 2.90777 3.15070 3.31611 3.35029 3.38336 3.61494 3.65569 3.85206 3.86914 3.93845 3.97937 4.11514 4.21159 4.21806 4.27521 4.30137 4.39810 4.58710 4.62075 4.68518 4.71820 4.78609 4.83209 4.90108 4.91943 5.05020 5.16048 5.23097 5.30144 5.30503 5.58730 5.61801 5.68167 5.84479 6.18666 6.20860 6.48984 6.83579 7.04294 7.18307 7.93239 8.04099 9.13029 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.003342 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.427609 B = 8375.199215 C = 9643.623030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.247 5.247 4 N -0.073 5.073 5 N -0.299 5.299 6 C 0.014 3.986 7 C -0.078 4.078 8 C 0.602 3.398 9 O -0.558 6.558 10 N -0.682 5.682 11 C 0.150 3.850 12 H 0.089 0.911 13 C -0.078 4.078 14 C -0.104 4.104 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.127 4.127 18 C -0.109 4.109 19 C -0.116 4.116 20 C 0.212 3.788 21 H 0.062 0.938 22 N -0.729 5.729 23 C -0.324 4.324 24 H 0.070 0.930 25 C -0.098 4.098 26 N -0.974 5.974 27 Si 1.123 2.877 28 H -0.296 1.296 29 H -0.277 1.277 30 H -0.278 1.278 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.049 0.951 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.230 0.770 37 H 0.417 0.583 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.106 0.894 44 H 0.361 0.639 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 6.572 -16.002 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.045 5.045 4 N -0.053 5.053 5 N -0.160 5.160 6 C -0.147 4.147 7 C -0.213 4.213 8 C 0.387 3.613 9 O -0.436 6.436 10 N -0.333 5.333 11 C 0.044 3.956 12 H 0.107 0.893 13 C -0.117 4.117 14 C -0.105 4.105 15 C -0.134 4.134 16 C -0.140 4.140 17 C -0.145 4.145 18 C -0.128 4.128 19 C -0.119 4.119 20 C 0.102 3.898 21 H 0.080 0.920 22 N -0.369 5.369 23 C -0.455 4.455 24 H 0.088 0.912 25 C -0.290 4.290 26 N -0.622 5.622 27 Si 0.948 3.052 28 H -0.223 1.223 29 H -0.203 1.203 30 H -0.204 1.204 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.246 0.754 37 H 0.254 0.746 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.125 0.875 44 H 0.194 0.806 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.714 5.536 -16.131 19.152 hybrid contribution -0.832 0.194 0.195 0.876 sum -9.545 5.730 -15.936 19.440 Atomic orbital electron populations 1.22063 0.91540 1.05405 1.02470 1.22732 0.97697 0.74551 1.07609 1.48172 1.39238 1.14143 1.02991 1.78210 1.16026 0.98884 1.12167 1.74890 1.16602 1.10970 1.13570 1.24466 1.01056 0.97710 0.91492 1.21858 1.14068 0.94950 0.90416 1.16720 0.76895 0.84750 0.82927 1.90797 1.49671 1.19156 1.83996 1.45299 1.66731 1.16767 1.04520 1.21580 0.95089 0.99529 0.79359 0.89329 1.21329 0.96473 0.93367 1.00490 1.20675 0.93817 0.95845 1.00187 1.20846 0.99177 0.93385 1.00007 1.21311 0.96448 0.97171 0.99100 1.21300 0.93161 0.99712 1.00315 1.20703 0.99841 0.93412 0.98850 1.21472 0.96191 0.95011 0.99275 1.19855 0.94464 0.88210 0.87261 0.92042 1.42372 1.28393 1.35455 1.30719 1.20274 1.01974 1.13998 1.09262 0.91198 1.27059 1.07239 0.96276 0.98406 1.70991 1.17109 1.30616 1.43437 0.82691 0.72070 0.75476 0.74978 1.22251 1.20334 1.20380 0.91365 0.87151 0.93183 0.85193 0.86612 0.75358 0.74557 0.89145 0.90088 0.84548 0.83275 0.84140 0.87541 0.80597 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.24 71.98 0.74 -1.45 16 2 C 0.09 1.55 6.73 86.38 0.58 2.13 16 3 N -0.25 -5.50 3.39 -335.42 -1.14 -6.64 16 4 N -0.07 -1.80 13.14 37.02 0.49 -1.32 16 5 N -0.30 -7.47 12.35 -57.50 -0.71 -8.18 16 6 C 0.01 0.28 11.55 84.18 0.97 1.25 16 7 C -0.08 -1.78 6.98 40.41 0.28 -1.50 16 8 C 0.60 15.36 7.80 86.61 0.68 16.04 16 9 O -0.56 -17.23 14.40 -4.09 -0.06 -17.29 16 10 N -0.68 -16.34 5.11 -441.65 -2.26 -18.60 16 11 C 0.15 4.60 3.07 45.90 0.14 4.74 16 12 H 0.09 3.19 7.39 -2.39 -0.02 3.17 16 13 C -0.08 -2.20 6.49 30.52 0.20 -2.00 16 14 C -0.10 -3.08 6.14 -19.54 -0.12 -3.20 16 15 C -0.12 -2.93 10.04 22.30 0.22 -2.70 16 16 C -0.12 -2.86 10.05 22.24 0.22 -2.64 16 17 C -0.13 -3.34 10.05 22.24 0.22 -3.12 16 18 C -0.11 -3.54 10.03 22.25 0.22 -3.32 16 19 C -0.12 -3.92 5.78 -19.58 -0.11 -4.03 16 20 C 0.21 7.72 3.12 44.91 0.14 7.86 16 21 H 0.06 2.25 8.04 -2.38 -0.02 2.23 16 22 N -0.73 -34.63 5.14 -323.31 -1.66 -36.29 16 23 C -0.32 -17.26 9.96 84.03 0.84 -16.42 16 24 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 25 C -0.10 -5.52 5.50 84.86 0.47 -5.05 16 26 N -0.97 -59.73 13.70 21.65 0.30 -59.43 16 27 Si 1.12 50.70 29.92 68.60 2.05 52.75 16 28 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 29 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 30 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.12 2.22 6.24 -2.39 -0.01 2.21 16 36 H 0.23 2.76 7.56 -2.91 -0.02 2.73 16 37 H 0.42 7.82 7.69 -92.71 -0.71 7.11 16 38 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 39 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 42 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.11 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.36 18.28 6.64 -92.71 -0.62 17.67 16 45 H 0.24 14.94 6.77 -92.71 -0.63 14.31 16 Total: -1.00 -72.47 381.15 2.56 -69.91 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -0.14 Total: 38.48 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 5.69 Total: -13.41 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -4.98 Total: -130.45 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.06 Total: -17.29 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -72.47 2.56 -69.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960265600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.270 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds