Wall clock time and date at job start Wed Apr 1 2020 00:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46991 * 2 1 4 4 C 1.34818 * 126.59379 * 125.00180 * 3 2 1 5 5 C 1.36590 * 106.83748 * 180.02562 * 4 3 2 6 6 C 1.47520 * 125.76859 * 179.97438 * 5 4 3 7 7 O 1.21602 * 120.00418 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00527 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00553 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.87970 * 31.48575 * 9 8 6 11 11 C 1.54337 * 110.82418 * 267.96824 * 9 8 6 12 12 C 1.51365 * 105.17447 * 268.12392 * 11 9 8 13 13 C 1.38501 * 130.39853 * 162.80902 * 12 11 9 14 14 C 1.38101 * 120.21361 * 179.97438 * 13 12 11 15 15 C 1.38251 * 119.94146 * 359.97438 * 14 13 12 16 16 C 1.38098 * 119.93126 * 0.02562 * 15 14 13 17 17 C 1.38230 * 109.75509 * 342.80936 * 12 11 9 18 18 C 1.51366 * 109.75829 * 0.02562 * 17 12 11 19 19 H 1.08997 * 110.38353 * 136.15358 * 18 17 12 20 20 N 1.46499 * 110.30330 * 258.26520 * 18 17 12 21 21 C 1.36931 * 120.00122 * 270.74720 * 20 18 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 N 1.34398 * 108.46286 * 0.23724 * 5 4 3 30 30 N 1.28759 * 109.51978 * 359.59277 * 29 5 4 31 31 H 1.09000 * 109.47177 * 299.99886 * 1 2 3 32 32 H 1.09000 * 109.47398 * 60.00318 * 1 2 3 33 33 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47177 * 240.00114 * 2 1 3 35 35 H 1.09001 * 109.46896 * 119.99828 * 2 1 3 36 36 H 1.08005 * 126.57958 * 359.97438 * 4 3 2 37 37 H 0.97003 * 119.99162 * 359.97438 * 8 6 5 38 38 H 1.09007 * 110.30567 * 27.04630 * 11 9 8 39 39 H 1.09002 * 110.30685 * 149.09664 * 11 9 8 40 40 H 1.07996 * 119.88998 * 359.97438 * 13 12 11 41 41 H 1.08004 * 120.02330 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.03669 * 179.97438 * 15 14 13 43 43 H 1.08003 * 119.89310 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99790 * 90.74237 * 20 18 17 45 45 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8716 1.9320 0.8867 5 6 3.0499 3.2324 0.5088 6 6 3.9063 4.2196 1.1932 7 8 4.5298 3.8986 2.1866 8 7 3.9976 5.4774 0.7176 9 6 4.8476 6.4578 1.3976 10 1 5.7071 5.9724 1.8599 11 6 4.0385 7.2536 2.4436 12 6 3.5354 8.4771 1.7081 13 6 2.5226 9.3651 2.0308 14 6 2.2366 10.4266 1.1949 15 6 2.9632 10.6046 0.0323 16 6 3.9733 9.7203 -0.2912 17 6 4.2612 8.6545 0.5451 18 6 5.3012 7.5619 0.4193 19 1 5.3265 7.1775 -0.6003 20 7 6.6207 8.0695 0.8034 21 6 7.4340 8.6429 -0.1372 22 1 7.1026 8.7215 -1.1621 23 6 8.6845 9.1234 0.2266 24 7 9.0882 9.0282 1.4758 25 14 9.7909 9.9127 -1.0550 26 1 11.0589 10.3459 -0.4150 27 1 10.0882 8.9281 -2.1262 28 1 9.1050 11.0915 -1.6426 29 7 2.3088 3.4623 -0.5886 30 7 1.6878 2.3847 -0.9217 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3262 1.4397 1.7337 37 1 3.5005 5.7333 -0.0751 38 1 3.2000 6.6587 2.8057 39 1 4.6799 7.5471 3.2746 40 1 1.9549 9.2269 2.9390 41 1 1.4464 11.1174 1.4497 42 1 2.7405 11.4339 -0.6227 43 1 4.5408 9.8602 -1.1994 44 1 6.9181 7.9994 1.7240 45 1 9.9619 9.3643 1.7300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960321130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:24 Heat of formation + Delta-G solvation = 104.171326 kcal Electronic energy + Delta-G solvation = -28795.103471 eV Core-core repulsion = 24815.001085 eV Total energy + Delta-G solvation = -3980.102386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.37163 -40.11241 -38.75542 -36.09513 -35.74236 -33.96553 -32.55636 -31.60496 -31.10462 -30.50663 -29.71172 -27.77094 -26.05348 -24.98895 -24.08850 -22.98131 -22.01160 -21.88519 -20.66547 -20.02692 -19.97562 -18.20533 -17.37502 -16.47201 -16.38904 -16.12826 -15.65832 -15.13715 -14.90669 -14.73505 -14.58082 -14.56086 -14.26725 -13.82605 -13.39386 -13.31240 -13.03942 -12.85770 -12.84399 -12.78370 -12.58422 -12.43502 -11.99892 -11.54493 -11.37884 -11.30213 -11.04539 -10.97852 -10.78467 -10.61989 -10.55348 -10.33218 -10.14773 -10.04738 -9.78173 -9.46339 -9.02515 -8.82149 -8.27274 -8.03692 -7.05997 -5.80839 -3.10866 0.95003 1.63702 1.76450 1.88814 1.94161 3.22846 3.35115 3.43376 3.47947 3.48610 3.93649 4.07088 4.28274 4.30283 4.52922 4.57917 4.60968 4.78323 4.86100 4.95031 5.01027 5.11840 5.25587 5.39935 5.47538 5.50245 5.54338 5.57976 5.63399 5.69226 5.81511 5.95610 6.04762 6.10907 6.14888 6.24481 6.31648 6.41717 6.55167 6.67015 6.81948 6.94975 7.02925 7.28486 7.53578 7.58614 7.66354 7.85674 8.31673 8.35588 9.47496 9.98748 10.34802 11.40907 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.002937 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.562193 B = 9531.674241 C =10922.165035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.363 5.363 4 C 0.091 3.909 5 C -0.097 4.097 6 C 0.604 3.396 7 O -0.539 6.539 8 N -0.695 5.695 9 C 0.135 3.865 10 H 0.113 0.887 11 C -0.086 4.086 12 C -0.097 4.097 13 C -0.114 4.114 14 C -0.132 4.132 15 C -0.128 4.128 16 C -0.089 4.089 17 C -0.092 4.092 18 C 0.207 3.793 19 H 0.066 0.934 20 N -0.703 5.703 21 C -0.243 4.243 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.928 5.928 25 Si 0.909 3.091 26 H -0.291 1.291 27 H -0.285 1.285 28 H -0.285 1.285 29 N -0.203 5.203 30 N -0.065 5.065 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.205 0.795 37 H 0.408 0.592 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.388 0.612 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.655 -15.613 -0.516 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.149 5.149 4 C -0.065 4.065 5 C -0.236 4.236 6 C 0.388 3.612 7 O -0.415 6.415 8 N -0.345 5.345 9 C 0.030 3.970 10 H 0.131 0.869 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.132 4.132 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.108 4.108 17 C -0.096 4.096 18 C 0.095 3.905 19 H 0.084 0.916 20 N -0.342 5.342 21 C -0.374 4.374 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.575 5.575 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.212 1.212 29 N -0.077 5.077 30 N -0.046 5.046 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.221 0.779 37 H 0.243 0.757 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.223 0.777 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.856 -15.477 -1.191 24.423 hybrid contribution 0.984 0.405 0.193 1.081 sum -17.872 -15.072 -0.998 23.400 Atomic orbital electron populations 1.22089 0.92760 1.03651 1.04084 1.22029 0.96846 0.76269 1.05140 1.50608 1.31857 1.12336 1.20100 1.23395 0.93048 0.94106 0.95980 1.21543 1.07645 0.95133 0.99288 1.16729 0.80117 0.81249 0.83137 1.90819 1.45832 1.79261 1.25593 1.45675 1.47648 1.09746 1.31423 1.21984 0.93039 0.88597 0.93407 0.86918 1.21417 0.99630 0.93465 0.97953 1.20517 0.96015 0.96788 0.96414 1.20465 0.98025 0.95249 0.99510 1.20838 1.00549 0.98168 0.95490 1.20958 0.96970 0.99250 0.97413 1.20612 0.96544 0.93928 0.99740 1.21724 0.95231 0.98177 0.94486 1.19839 0.85351 0.88498 0.96810 0.91617 1.42246 1.10992 1.70686 1.10256 1.19153 0.95851 1.31740 0.90647 0.91008 1.24760 0.97840 1.01441 0.96363 1.69658 1.20603 1.51462 1.15756 0.86254 0.80054 0.79261 0.80523 1.21645 1.21134 1.21161 1.74663 1.04715 1.18138 1.10140 1.81959 1.20597 0.90217 1.11818 0.91688 0.90679 0.89916 0.88331 0.87673 0.77854 0.75707 0.91033 0.89263 0.87220 0.86858 0.86747 0.86544 0.77744 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.12 37.16 0.38 -0.26 16 2 C 0.12 0.48 7.26 -4.04 -0.03 0.45 16 3 N -0.36 -3.18 3.69 -61.06 -0.23 -3.41 16 4 C 0.09 0.89 11.27 -16.83 -0.19 0.70 16 5 C -0.10 -1.27 6.99 -83.56 -0.58 -1.86 16 6 C 0.60 9.35 7.82 -12.47 -0.10 9.26 16 7 O -0.54 -9.56 16.51 5.28 0.09 -9.48 16 8 N -0.70 -10.79 5.11 -53.49 -0.27 -11.06 16 9 C 0.14 2.37 3.03 -66.53 -0.20 2.17 16 10 H 0.11 2.20 7.47 -51.93 -0.39 1.81 16 11 C -0.09 -1.43 6.48 -26.86 -0.17 -1.60 16 12 C -0.10 -1.68 6.14 -104.20 -0.64 -2.32 16 13 C -0.11 -1.81 10.04 -39.53 -0.40 -2.20 16 14 C -0.13 -1.99 10.05 -39.63 -0.40 -2.39 16 15 C -0.13 -2.04 10.05 -39.63 -0.40 -2.44 16 16 C -0.09 -1.63 10.04 -39.54 -0.40 -2.03 16 17 C -0.09 -1.76 5.77 -104.20 -0.60 -2.36 16 18 C 0.21 4.12 3.13 -68.06 -0.21 3.91 16 19 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 20 N -0.70 -17.30 5.13 -53.55 -0.27 -17.57 16 21 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 N -0.20 -2.80 12.04 32.84 0.40 -2.41 16 30 N -0.07 -0.80 13.65 60.35 0.82 0.02 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.11 0.14 8.08 -51.93 -0.42 -0.28 16 36 H 0.20 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.41 5.95 8.34 -40.82 -0.34 5.61 16 38 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.12 2.11 8.06 -52.48 -0.42 1.68 16 44 H 0.39 10.20 7.82 -40.82 -0.32 9.88 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -33.93 388.67 -8.18 -42.10 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -6.08 Total: 13.73 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -4.19 Total: -8.03 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 1.17 Total: -61.42 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.93 -8.18 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960321130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.275 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds