Wall clock time and date at job start Wed Apr 1 2020 00:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46991 * 2 1 4 4 C 1.34818 * 126.59379 * 125.00180 * 3 2 1 5 5 C 1.36590 * 106.83748 * 180.02562 * 4 3 2 6 6 C 1.47520 * 125.76859 * 179.97438 * 5 4 3 7 7 O 1.21602 * 120.00418 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00527 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00553 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.87970 * 31.48575 * 9 8 6 11 11 C 1.54337 * 110.82418 * 267.96824 * 9 8 6 12 12 C 1.51365 * 105.17447 * 268.12392 * 11 9 8 13 13 C 1.38501 * 130.39853 * 162.80902 * 12 11 9 14 14 C 1.38101 * 120.21361 * 179.97438 * 13 12 11 15 15 C 1.38251 * 119.94146 * 359.97438 * 14 13 12 16 16 C 1.38098 * 119.93126 * 0.02562 * 15 14 13 17 17 C 1.38230 * 109.75509 * 342.80936 * 12 11 9 18 18 C 1.51366 * 109.75829 * 0.02562 * 17 12 11 19 19 H 1.08997 * 110.38353 * 136.15358 * 18 17 12 20 20 N 1.46499 * 110.30330 * 258.26520 * 18 17 12 21 21 C 1.36931 * 120.00122 * 270.74720 * 20 18 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48497 * 109.47173 * 179.72427 * 25 23 21 27 27 H 1.48506 * 109.46866 * 299.71963 * 25 23 21 28 28 H 1.48501 * 109.47438 * 59.72083 * 25 23 21 29 29 N 1.34398 * 108.46286 * 0.23724 * 5 4 3 30 30 N 1.28759 * 109.51978 * 359.59277 * 29 5 4 31 31 H 1.09000 * 109.47177 * 299.99886 * 1 2 3 32 32 H 1.09000 * 109.47398 * 60.00318 * 1 2 3 33 33 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47177 * 240.00114 * 2 1 3 35 35 H 1.09001 * 109.46896 * 119.99828 * 2 1 3 36 36 H 1.08005 * 126.57958 * 359.97438 * 4 3 2 37 37 H 0.97003 * 119.99162 * 359.97438 * 8 6 5 38 38 H 1.09007 * 110.30567 * 27.04630 * 11 9 8 39 39 H 1.09002 * 110.30685 * 149.09664 * 11 9 8 40 40 H 1.07996 * 119.88998 * 359.97438 * 13 12 11 41 41 H 1.08004 * 120.02330 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.03669 * 179.97438 * 15 14 13 43 43 H 1.08003 * 119.89310 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99790 * 90.74237 * 20 18 17 45 45 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8716 1.9320 0.8867 5 6 3.0499 3.2324 0.5088 6 6 3.9063 4.2196 1.1932 7 8 4.5298 3.8986 2.1866 8 7 3.9976 5.4774 0.7176 9 6 4.8476 6.4578 1.3976 10 1 5.7071 5.9724 1.8599 11 6 4.0385 7.2536 2.4436 12 6 3.5354 8.4771 1.7081 13 6 2.5226 9.3651 2.0308 14 6 2.2366 10.4266 1.1949 15 6 2.9632 10.6046 0.0323 16 6 3.9733 9.7203 -0.2912 17 6 4.2612 8.6545 0.5451 18 6 5.3012 7.5619 0.4193 19 1 5.3265 7.1775 -0.6003 20 7 6.6207 8.0695 0.8034 21 6 7.4340 8.6429 -0.1372 22 1 7.1026 8.7215 -1.1621 23 6 8.6845 9.1234 0.2266 24 7 9.0882 9.0282 1.4758 25 14 9.7909 9.9127 -1.0550 26 1 11.0589 10.3459 -0.4150 27 1 10.0882 8.9281 -2.1262 28 1 9.1050 11.0915 -1.6426 29 7 2.3088 3.4623 -0.5886 30 7 1.6878 2.3847 -0.9217 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3262 1.4397 1.7337 37 1 3.5005 5.7333 -0.0751 38 1 3.2000 6.6587 2.8057 39 1 4.6799 7.5471 3.2746 40 1 1.9549 9.2269 2.9390 41 1 1.4464 11.1174 1.4497 42 1 2.7405 11.4339 -0.6227 43 1 4.5408 9.8602 -1.1994 44 1 6.9181 7.9994 1.7240 45 1 9.9619 9.3643 1.7300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960321130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:23 Heat of formation + Delta-G solvation = 80.991493 kcal Electronic energy + Delta-G solvation = -28796.108624 eV Core-core repulsion = 24815.001085 eV Total energy + Delta-G solvation = -3981.107539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.23529 -41.48205 -40.02851 -37.52210 -36.36446 -35.72836 -33.99885 -32.76763 -32.33873 -31.36694 -31.26046 -29.07843 -27.68929 -25.65438 -25.43557 -24.56880 -23.15477 -22.72599 -21.87901 -21.50025 -21.18072 -19.41171 -19.04974 -17.56165 -17.35401 -17.13244 -17.05585 -16.50230 -16.21566 -15.88558 -15.76963 -15.53815 -15.48455 -15.16597 -15.05777 -14.72299 -14.24911 -14.22791 -13.93350 -13.76254 -13.36570 -13.11409 -13.05679 -12.92476 -12.78733 -12.62002 -12.55903 -12.33340 -12.23683 -12.05633 -12.00694 -11.84260 -11.65224 -11.31925 -11.28489 -10.98788 -10.43862 -10.12951 -9.61315 -9.40289 -9.06646 -7.95386 -5.25518 0.15823 0.56280 0.60243 0.60793 1.12925 1.46554 1.49482 1.55207 2.01928 2.20985 2.55804 2.96198 3.16001 3.36558 3.39612 3.44712 3.75185 3.82498 3.96279 4.01120 4.07162 4.13246 4.19008 4.27700 4.29972 4.31847 4.35440 4.49465 4.60738 4.70083 4.76188 4.77287 4.84852 4.90232 4.94641 4.98250 5.22132 5.24537 5.31845 5.42411 5.49588 5.50185 5.65904 5.71640 5.90470 6.22069 6.25905 6.38888 6.89216 7.10172 7.31243 7.99271 8.25939 9.27278 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011217 B = 0.002937 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.562193 B = 9531.674241 C =10922.165035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.348 5.348 4 C 0.112 3.888 5 C -0.125 4.125 6 C 0.606 3.394 7 O -0.566 6.566 8 N -0.692 5.692 9 C 0.147 3.853 10 H 0.089 0.911 11 C -0.078 4.078 12 C -0.104 4.104 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.128 4.128 16 C -0.112 4.112 17 C -0.117 4.117 18 C 0.207 3.793 19 H 0.057 0.943 20 N -0.716 5.716 21 C -0.238 4.238 22 H 0.076 0.924 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.295 1.295 27 H -0.278 1.278 28 H -0.278 1.278 29 N -0.227 5.227 30 N -0.086 5.086 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.239 0.761 37 H 0.412 0.588 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.970 -16.501 -0.520 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.133 5.133 4 C -0.046 4.046 5 C -0.265 4.265 6 C 0.392 3.608 7 O -0.444 6.444 8 N -0.342 5.342 9 C 0.041 3.959 10 H 0.107 0.893 11 C -0.116 4.116 12 C -0.105 4.105 13 C -0.135 4.135 14 C -0.142 4.142 15 C -0.146 4.146 16 C -0.131 4.131 17 C -0.120 4.120 18 C 0.097 3.903 19 H 0.075 0.925 20 N -0.354 5.354 21 C -0.370 4.370 22 H 0.094 0.906 23 C -0.262 4.262 24 N -0.616 5.616 25 Si 0.800 3.200 26 H -0.222 1.222 27 H -0.204 1.204 28 H -0.204 1.204 29 N -0.101 5.101 30 N -0.067 5.067 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.255 0.745 37 H 0.248 0.752 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.125 0.875 44 H 0.208 0.792 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.257 -16.398 -1.256 26.876 hybrid contribution 1.516 0.548 0.168 1.621 sum -19.741 -15.850 -1.088 25.340 Atomic orbital electron populations 1.22082 0.92549 1.04979 1.02657 1.22596 0.97042 0.73897 1.07740 1.50968 1.30566 1.13239 1.18552 1.23860 0.91833 0.92848 0.96065 1.21354 1.08856 0.96066 1.00229 1.17003 0.79833 0.81208 0.82771 1.90795 1.47110 1.79663 1.26841 1.45567 1.47346 1.09750 1.31511 1.21602 0.92942 0.88270 0.93063 0.89335 1.21322 0.99693 0.93366 0.97231 1.20655 0.96600 0.97410 0.95815 1.20852 0.97323 0.94734 1.00595 1.21302 1.00523 0.97976 0.94351 1.21291 0.95892 0.99207 0.98235 1.20768 0.97854 0.94699 0.99762 1.21522 0.96081 0.98381 0.95995 1.19909 0.84033 0.89626 0.96736 0.92523 1.42329 1.12880 1.70997 1.09217 1.19490 0.96074 1.30216 0.91213 0.90648 1.25531 0.99451 1.03035 0.98198 1.69816 1.20743 1.53424 1.17591 0.85252 0.77933 0.78536 0.78282 1.22167 1.20376 1.20412 1.74633 1.05405 1.19305 1.10732 1.81868 1.21017 0.90754 1.13035 0.92528 0.92656 0.87198 0.86832 0.83985 0.74526 0.75192 0.89559 0.89885 0.84472 0.83131 0.84059 0.87465 0.79156 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.12 71.98 0.73 -0.15 16 2 C 0.11 0.52 7.26 86.38 0.63 1.15 16 3 N -0.35 -5.39 3.69 -347.09 -1.28 -6.68 16 4 C 0.11 1.96 11.27 83.85 0.95 2.91 16 5 C -0.13 -3.25 6.99 40.81 0.29 -2.97 16 6 C 0.61 19.06 7.82 86.69 0.68 19.73 16 7 O -0.57 -20.34 16.51 -4.04 -0.07 -20.41 16 8 N -0.69 -22.18 5.11 -441.41 -2.25 -24.43 16 9 C 0.15 5.40 3.03 45.90 0.14 5.54 16 10 H 0.09 3.68 7.47 -2.39 -0.02 3.67 16 11 C -0.08 -2.60 6.48 30.51 0.20 -2.41 16 12 C -0.10 -3.57 6.14 -19.59 -0.12 -3.69 16 13 C -0.12 -3.41 10.04 22.30 0.22 -3.19 16 14 C -0.12 -3.31 10.05 22.24 0.22 -3.09 16 15 C -0.13 -3.83 10.05 22.24 0.22 -3.60 16 16 C -0.11 -4.09 10.04 22.30 0.22 -3.87 16 17 C -0.12 -4.50 5.77 -19.59 -0.11 -4.61 16 18 C 0.21 8.61 3.13 44.91 0.14 8.75 16 19 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 20 N -0.72 -36.79 5.13 -323.34 -1.66 -38.44 16 21 C -0.24 -13.32 9.96 84.03 0.84 -12.49 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 25 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 29 N -0.23 -6.29 12.04 -50.00 -0.60 -6.89 16 30 N -0.09 -2.05 13.65 37.02 0.51 -1.55 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.11 0.00 8.14 -2.39 -0.02 -0.01 16 34 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.14 -0.26 8.08 -2.39 -0.02 -0.28 16 36 H 0.24 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.41 12.50 8.34 -92.71 -0.77 11.72 16 38 H 0.09 2.59 8.09 -2.38 -0.02 2.57 16 39 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 43 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.38 20.82 7.82 -92.71 -0.73 20.10 16 45 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -76.42 388.67 2.20 -74.22 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.46 Total: 40.35 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.71 Total: -5.54 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -5.01 Total: -137.36 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.07 Total: -20.41 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -76.42 2.20 -74.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960321130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.211 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds