Wall clock time and date at job start Wed Apr 1 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47046 * 2 1 4 4 N 1.40228 * 126.65672 * 269.68822 * 3 2 1 5 5 N 1.28646 * 109.50603 * 179.80762 * 4 3 2 6 6 C 1.35430 * 110.13084 * 0.46328 * 5 4 3 7 7 C 1.39794 * 133.04959 * 179.73030 * 6 5 4 8 8 C 1.38878 * 119.56301 * 179.97438 * 7 6 5 9 9 C 1.47721 * 119.86358 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99864 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99852 * 180.02562 * 11 9 8 13 13 H 1.09000 * 115.51528 * 350.40998 * 12 11 9 14 14 C 1.52999 * 117.44033 * 204.99818 * 12 11 9 15 15 H 1.08998 * 119.53774 * 5.70925 * 14 12 11 16 16 C 1.54387 * 118.12111 * 160.80648 * 14 12 11 17 17 N 1.48143 * 104.61980 * 87.18814 * 16 14 12 18 18 C 1.36934 * 127.84088 * 140.41079 * 17 16 14 19 19 H 1.07998 * 120.00697 * 195.57514 * 18 17 16 20 20 C 1.38819 * 119.99663 * 15.57525 * 18 17 16 21 21 N 1.31616 * 119.99793 * 9.10176 * 20 18 17 22 22 Si 1.86797 * 120.00017 * 189.09311 * 20 18 17 23 23 H 1.48501 * 109.46824 * 90.00282 * 22 20 18 24 24 H 1.48502 * 109.47541 * 210.00360 * 22 20 18 25 25 H 1.48505 * 109.47506 * 330.00919 * 22 20 18 26 26 C 1.48149 * 104.32486 * 320.41638 * 17 16 14 27 27 C 1.52997 * 117.44341 * 135.75583 * 12 11 9 28 28 H 1.08995 * 119.54290 * 355.88129 * 27 12 11 29 29 C 1.40253 * 120.27409 * 0.02562 * 8 7 6 30 30 C 1.36265 * 120.45427 * 0.02562 * 29 8 7 31 31 C 1.37260 * 126.65717 * 90.00152 * 3 2 1 32 32 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47131 * 59.99822 * 1 2 3 34 34 H 1.09008 * 109.47022 * 299.99665 * 1 2 3 35 35 H 1.08998 * 109.47131 * 120.00178 * 2 1 3 36 36 H 1.09000 * 109.46725 * 240.00376 * 2 1 3 37 37 H 1.08001 * 120.21695 * 359.95184 * 7 6 5 38 38 H 0.96991 * 120.00151 * 359.97438 * 11 9 8 39 39 H 1.08995 * 110.40738 * 205.97887 * 16 14 12 40 40 H 1.09001 * 110.40732 * 328.40491 * 16 14 12 41 41 H 0.97008 * 119.99730 * 179.97438 * 21 20 18 42 42 H 1.08997 * 110.41078 * 158.36381 * 26 17 16 43 43 H 1.08999 * 110.40283 * 280.79692 * 26 17 16 44 44 H 1.07999 * 119.77309 * 179.97438 * 29 8 7 45 45 H 1.07996 * 119.93125 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3032 2.1685 -1.1249 5 7 2.7071 3.3295 -0.7456 6 6 2.7306 3.3959 0.6069 7 6 3.0869 4.4047 1.5067 8 6 3.0021 4.1661 2.8722 9 6 3.3774 5.2271 3.8290 10 8 3.7591 6.3067 3.4205 11 7 3.2967 4.9984 5.1547 12 6 3.6684 6.0509 6.1036 13 1 4.1512 6.9260 5.6687 14 6 4.1229 5.6147 7.4979 15 1 4.2476 4.5539 7.7151 16 6 4.9317 6.6190 8.3469 17 7 3.9068 7.4192 9.0567 18 6 3.9376 7.8660 10.3507 19 1 3.0321 8.2187 10.8220 20 6 5.1328 7.8656 11.0568 21 7 6.2641 7.6082 10.4354 22 14 5.1354 8.2307 12.8888 23 1 4.9750 6.9634 13.6462 24 1 6.4211 8.8722 13.2639 25 1 4.0121 9.1464 13.2128 26 6 2.8407 7.6262 8.0490 27 6 2.7442 6.2788 7.3015 28 1 1.8168 5.7117 7.3803 29 6 2.5626 2.9215 3.3466 30 6 2.2149 1.9337 2.4748 31 6 2.2915 2.1538 1.1011 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 0.5138 0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 3.4261 5.3631 1.1424 38 1 2.9918 4.1372 5.4806 39 1 5.5634 6.0908 9.0611 40 1 5.5362 7.2595 7.7046 41 1 7.0993 7.6083 10.9288 42 1 1.8948 7.8578 8.5385 43 1 3.1186 8.4240 7.3602 44 1 2.5002 2.7446 4.4102 45 1 1.8772 0.9787 2.8493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962513665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:18 Heat of formation + Delta-G solvation = 143.944163 kcal Electronic energy + Delta-G solvation = -27915.260046 eV Core-core repulsion = 23936.882340 eV Total energy + Delta-G solvation = -3978.377706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.51740 -40.11444 -38.60122 -37.32361 -35.96477 -34.58305 -32.79186 -31.97352 -30.95654 -30.33068 -29.85790 -27.17169 -25.90171 -25.05257 -24.62013 -23.58749 -21.93191 -21.26687 -20.79054 -20.32795 -19.32943 -18.44235 -17.91511 -17.06386 -16.73311 -16.45825 -16.18504 -15.48904 -15.13428 -14.88300 -14.71503 -14.57911 -14.31716 -13.78956 -13.68530 -13.43225 -13.29008 -12.90416 -12.77284 -12.72125 -12.42690 -12.33627 -12.22053 -11.87734 -11.58010 -11.52501 -11.17574 -11.14914 -11.01177 -10.84904 -10.42324 -10.24013 -10.17521 -10.01453 -9.75100 -9.37115 -9.22834 -8.83661 -8.73803 -8.36438 -6.88487 -5.81124 -3.15458 0.03048 0.46481 1.56954 1.74972 2.57426 2.92712 3.37417 3.42343 3.42980 3.44923 3.60718 3.81592 4.11946 4.25638 4.29207 4.33115 4.44020 4.46265 4.50160 4.56760 4.65655 4.84755 4.95013 5.12757 5.14379 5.33375 5.36369 5.39403 5.41232 5.50322 5.54045 5.68785 5.74468 5.81344 5.88231 6.01154 6.10899 6.14798 6.19453 6.50512 6.68440 6.75340 6.88143 7.32989 7.47817 7.51768 7.55866 7.69995 8.16431 8.18944 9.09496 9.72150 10.48971 11.33222 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.001801 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.027881 B =15539.906400 C =15941.955624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.127 3.873 3 N -0.395 5.395 4 N -0.007 5.007 5 N -0.207 5.207 6 C -0.028 4.028 7 C 0.037 3.963 8 C -0.147 4.147 9 C 0.564 3.436 10 O -0.530 6.530 11 N -0.691 5.691 12 C 0.096 3.904 13 H 0.134 0.866 14 C -0.179 4.179 15 H 0.103 0.897 16 C 0.184 3.816 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.155 3.845 27 C -0.181 4.181 28 H 0.103 0.897 29 C -0.039 4.039 30 C -0.127 4.127 31 C 0.106 3.894 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.255 0.745 42 H 0.052 0.948 43 H 0.029 0.971 44 H 0.142 0.858 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.981 -19.238 -18.982 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.006 3.994 3 N -0.189 5.189 4 N 0.013 4.987 5 N -0.086 5.086 6 C -0.152 4.152 7 C 0.014 3.986 8 C -0.154 4.154 9 C 0.351 3.649 10 O -0.407 6.407 11 N -0.340 5.340 12 C -0.010 4.010 13 H 0.151 0.849 14 C -0.200 4.200 15 H 0.121 0.879 16 C 0.058 3.942 17 N -0.316 5.316 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.028 3.972 27 C -0.203 4.203 28 H 0.121 0.879 29 C -0.061 4.061 30 C -0.149 4.149 31 C -0.016 4.016 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.173 0.827 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.160 0.840 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.545 -18.423 -20.604 29.583 hybrid contribution -0.278 -0.746 2.114 2.259 sum -10.823 -19.169 -18.490 28.748 Atomic orbital electron populations 1.22224 0.93548 1.03714 1.03640 1.21875 0.95749 0.76503 1.05313 1.50381 1.51745 1.13399 1.03374 1.81645 1.12967 0.96398 1.07702 1.74896 1.12089 1.11249 1.10372 1.19800 1.09984 0.95130 0.90240 1.20599 0.90483 0.97630 0.89891 1.19706 1.07064 0.95241 0.93361 1.17917 0.77929 0.86987 0.82056 1.90814 1.46366 1.25163 1.78372 1.45251 1.66975 1.16668 1.05079 1.21889 1.02170 0.92839 0.84104 0.84870 1.24661 0.99305 1.00617 0.95429 0.87860 1.21074 0.90295 0.90097 0.92706 1.45176 1.18120 1.59857 1.08481 1.18998 0.93909 1.36907 0.85710 0.90494 1.24909 0.95040 1.01587 0.98761 1.69895 0.97186 1.54567 1.34435 0.86100 0.76995 0.77853 0.84687 1.21541 1.21642 1.20528 1.21124 0.93450 0.91685 0.90898 1.24376 0.94432 1.01347 1.00142 0.87901 1.20938 0.93809 0.91228 1.00103 1.19681 1.06050 1.01178 0.88021 1.19499 0.99417 0.92051 0.90656 0.89795 0.91348 0.91669 0.88277 0.87776 0.82708 0.76756 0.89031 0.95540 0.93512 0.92969 0.95370 0.84039 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.24 37.16 0.38 -0.16 16 2 C 0.13 0.48 7.21 -4.04 -0.03 0.45 16 3 N -0.39 -3.28 3.71 -58.67 -0.22 -3.49 16 4 N -0.01 -0.08 13.72 60.35 0.83 0.75 16 5 N -0.21 -2.61 12.40 32.15 0.40 -2.21 16 6 C -0.03 -0.32 7.26 -84.76 -0.62 -0.94 16 7 C 0.04 0.42 9.64 -38.76 -0.37 0.04 16 8 C -0.15 -1.54 5.87 -105.03 -0.62 -2.16 16 9 C 0.56 7.63 7.76 -12.39 -0.10 7.53 16 10 O -0.53 -9.29 15.88 5.30 0.08 -9.21 16 11 N -0.69 -8.60 5.51 -54.79 -0.30 -8.90 16 12 C 0.10 1.54 5.97 -67.93 -0.41 1.13 16 13 H 0.13 2.47 7.40 -51.93 -0.38 2.08 16 14 C -0.18 -3.21 7.06 -89.22 -0.63 -3.84 16 15 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 16 C 0.18 4.33 5.70 -2.41 -0.01 4.32 16 17 N -0.59 -14.94 3.38 -168.86 -0.57 -15.51 16 18 C -0.23 -6.23 10.35 -15.06 -0.16 -6.39 16 19 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 21 N -0.91 -26.49 10.86 55.49 0.60 -25.89 16 22 Si 0.91 21.67 29.56 -169.99 -5.03 16.64 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.16 3.21 7.04 -2.41 -0.02 3.20 16 27 C -0.18 -3.09 7.06 -89.22 -0.63 -3.72 16 28 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 29 C -0.04 -0.28 9.46 -39.54 -0.37 -0.65 16 30 C -0.13 -0.84 9.97 -39.89 -0.40 -1.23 16 31 C 0.11 0.96 6.93 -84.10 -0.58 0.38 16 32 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.25 8.14 -51.92 -0.42 -0.18 16 35 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.16 1.79 7.62 -52.49 -0.40 1.39 16 38 H 0.40 3.59 6.82 -40.82 -0.28 3.31 16 39 H 0.09 2.39 6.51 -51.93 -0.34 2.06 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.14 0.64 6.36 -52.49 -0.33 0.30 16 45 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -34.39 379.62 -9.06 -43.45 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.93 Total: 0.95 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -4.65 Total: -2.30 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.74 Total: -55.26 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.39 -9.06 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962513665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.394 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds