Wall clock time and date at job start Wed Apr 1 2020 00:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47046 * 2 1 4 4 N 1.40228 * 126.65672 * 269.68822 * 3 2 1 5 5 N 1.28646 * 109.50603 * 179.80762 * 4 3 2 6 6 C 1.35430 * 110.13084 * 0.46328 * 5 4 3 7 7 C 1.39794 * 133.04959 * 179.73030 * 6 5 4 8 8 C 1.38878 * 119.56301 * 179.97438 * 7 6 5 9 9 C 1.47721 * 119.86358 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99864 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99852 * 180.02562 * 11 9 8 13 13 H 1.09000 * 115.51528 * 350.40998 * 12 11 9 14 14 C 1.52999 * 117.44033 * 204.99818 * 12 11 9 15 15 H 1.08998 * 119.53774 * 5.70925 * 14 12 11 16 16 C 1.54387 * 118.12111 * 160.80648 * 14 12 11 17 17 N 1.48143 * 104.61980 * 87.18814 * 16 14 12 18 18 C 1.36934 * 127.84088 * 140.41079 * 17 16 14 19 19 H 1.07998 * 120.00697 * 195.57514 * 18 17 16 20 20 C 1.38819 * 119.99663 * 15.57525 * 18 17 16 21 21 N 1.31616 * 119.99793 * 9.10176 * 20 18 17 22 22 Si 1.86797 * 120.00017 * 189.09311 * 20 18 17 23 23 H 1.48501 * 109.46824 * 90.00282 * 22 20 18 24 24 H 1.48502 * 109.47541 * 210.00360 * 22 20 18 25 25 H 1.48505 * 109.47506 * 330.00919 * 22 20 18 26 26 C 1.48149 * 104.32486 * 320.41638 * 17 16 14 27 27 C 1.52997 * 117.44341 * 135.75583 * 12 11 9 28 28 H 1.08995 * 119.54290 * 355.88129 * 27 12 11 29 29 C 1.40253 * 120.27409 * 0.02562 * 8 7 6 30 30 C 1.36265 * 120.45427 * 0.02562 * 29 8 7 31 31 C 1.37260 * 126.65717 * 90.00152 * 3 2 1 32 32 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47131 * 59.99822 * 1 2 3 34 34 H 1.09008 * 109.47022 * 299.99665 * 1 2 3 35 35 H 1.08998 * 109.47131 * 120.00178 * 2 1 3 36 36 H 1.09000 * 109.46725 * 240.00376 * 2 1 3 37 37 H 1.08001 * 120.21695 * 359.95184 * 7 6 5 38 38 H 0.96991 * 120.00151 * 359.97438 * 11 9 8 39 39 H 1.08995 * 110.40738 * 205.97887 * 16 14 12 40 40 H 1.09001 * 110.40732 * 328.40491 * 16 14 12 41 41 H 0.97008 * 119.99730 * 179.97438 * 21 20 18 42 42 H 1.08997 * 110.41078 * 158.36381 * 26 17 16 43 43 H 1.08999 * 110.40283 * 280.79692 * 26 17 16 44 44 H 1.07999 * 119.77309 * 179.97438 * 29 8 7 45 45 H 1.07996 * 119.93125 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3032 2.1685 -1.1249 5 7 2.7071 3.3295 -0.7456 6 6 2.7306 3.3959 0.6069 7 6 3.0869 4.4047 1.5067 8 6 3.0021 4.1661 2.8722 9 6 3.3774 5.2271 3.8290 10 8 3.7591 6.3067 3.4205 11 7 3.2967 4.9984 5.1547 12 6 3.6684 6.0509 6.1036 13 1 4.1512 6.9260 5.6687 14 6 4.1229 5.6147 7.4979 15 1 4.2476 4.5539 7.7151 16 6 4.9317 6.6190 8.3469 17 7 3.9068 7.4192 9.0567 18 6 3.9376 7.8660 10.3507 19 1 3.0321 8.2187 10.8220 20 6 5.1328 7.8656 11.0568 21 7 6.2641 7.6082 10.4354 22 14 5.1354 8.2307 12.8888 23 1 4.9750 6.9634 13.6462 24 1 6.4211 8.8722 13.2639 25 1 4.0121 9.1464 13.2128 26 6 2.8407 7.6262 8.0490 27 6 2.7442 6.2788 7.3015 28 1 1.8168 5.7117 7.3803 29 6 2.5626 2.9215 3.3466 30 6 2.2149 1.9337 2.4748 31 6 2.2915 2.1538 1.1011 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 0.5138 0.8901 35 1 1.8934 -0.5138 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 3.4261 5.3631 1.1424 38 1 2.9918 4.1372 5.4806 39 1 5.5634 6.0908 9.0611 40 1 5.5362 7.2595 7.7046 41 1 7.0993 7.6083 10.9288 42 1 1.8948 7.8578 8.5385 43 1 3.1186 8.4240 7.3602 44 1 2.5002 2.7446 4.4102 45 1 1.8772 0.9787 2.8493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962513665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:17 Heat of formation + Delta-G solvation = 120.360127 kcal Electronic energy + Delta-G solvation = -27916.282726 eV Core-core repulsion = 23936.882340 eV Total energy + Delta-G solvation = -3979.400387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.22617 -41.27886 -39.98554 -38.19064 -36.48798 -36.11665 -34.41624 -32.59518 -32.27972 -31.29713 -30.69981 -28.89593 -27.67760 -25.74434 -25.46719 -24.22641 -23.43090 -21.96050 -21.87822 -21.76671 -20.86084 -19.37472 -18.83453 -18.48620 -17.94333 -17.34525 -16.96944 -16.75545 -16.32179 -15.97283 -15.64328 -15.54662 -15.37672 -14.89814 -14.86435 -14.61126 -14.27656 -14.05240 -13.74212 -13.52604 -13.32837 -13.28449 -13.22731 -13.04016 -12.87358 -12.80111 -12.69407 -12.26415 -12.11879 -12.00581 -11.86443 -11.81964 -11.76542 -11.64146 -11.21148 -10.82744 -10.66551 -10.10861 -9.74468 -9.43106 -8.90332 -7.89991 -5.26681 -0.68589 -0.27895 1.02921 1.05622 1.48848 1.50336 1.59542 1.63643 1.83130 2.49920 2.57545 2.91222 2.92463 3.28727 3.32879 3.46357 3.55056 3.67369 3.81097 3.86557 3.94519 3.96952 4.01555 4.16201 4.17624 4.26520 4.32646 4.42626 4.55996 4.65299 4.75690 4.80245 4.85435 4.89954 4.92811 5.02558 5.08127 5.09740 5.20007 5.31072 5.35282 5.44533 5.46988 5.55972 5.62240 5.67678 6.18842 6.48203 6.81217 7.02352 7.14575 7.69288 8.47573 9.23846 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.001801 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.027881 B =15539.906400 C =15941.955624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.381 5.381 4 N -0.029 5.029 5 N -0.245 5.245 6 C -0.050 4.050 7 C 0.017 3.983 8 C -0.145 4.145 9 C 0.565 3.435 10 O -0.579 6.579 11 N -0.671 5.671 12 C 0.114 3.886 13 H 0.104 0.896 14 C -0.174 4.174 15 H 0.134 0.866 16 C 0.186 3.814 17 N -0.617 5.617 18 C -0.239 4.239 19 H 0.083 0.917 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.982 3.018 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.268 1.268 26 C 0.146 3.854 27 C -0.162 4.162 28 H 0.141 0.859 29 C -0.033 4.033 30 C -0.105 4.105 31 C 0.104 3.896 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.420 0.580 39 H 0.060 0.940 40 H -0.007 1.007 41 H 0.250 0.750 42 H 0.064 0.936 43 H 0.016 0.984 44 H 0.180 0.820 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 -23.066 -17.910 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.176 5.176 4 N -0.008 5.008 5 N -0.124 5.124 6 C -0.175 4.175 7 C -0.006 4.006 8 C -0.152 4.152 9 C 0.354 3.646 10 O -0.459 6.459 11 N -0.322 5.322 12 C 0.007 3.993 13 H 0.121 0.879 14 C -0.195 4.195 15 H 0.152 0.848 16 C 0.060 3.940 17 N -0.341 5.341 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.809 3.191 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.193 1.193 26 C 0.021 3.979 27 C -0.183 4.183 28 H 0.159 0.841 29 C -0.054 4.054 30 C -0.127 4.127 31 C -0.020 4.020 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.259 0.741 39 H 0.079 0.921 40 H 0.011 0.989 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.197 0.803 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.065 -22.307 -19.568 32.422 hybrid contribution 0.455 0.424 1.689 1.800 sum -12.610 -21.883 -17.879 30.944 Atomic orbital electron populations 1.22209 0.92873 1.05042 1.02518 1.22409 0.96254 0.74325 1.07526 1.50768 1.50112 1.14342 1.02389 1.81540 1.13533 0.96565 1.09181 1.74861 1.13725 1.12274 1.11504 1.19962 1.11026 0.96445 0.90046 1.20484 0.92045 0.97338 0.90736 1.19477 1.07947 0.95818 0.91940 1.18378 0.76789 0.86966 0.82475 1.90803 1.48501 1.27474 1.79150 1.44941 1.66443 1.16711 1.04079 1.21386 1.01118 0.92844 0.83927 0.87854 1.24343 0.98650 1.00570 0.95980 0.84804 1.20821 0.90451 0.90499 0.92215 1.45486 1.19416 1.60465 1.08727 1.19397 0.94171 1.36279 0.86947 0.89912 1.25766 0.94734 1.02155 1.03077 1.70101 0.97539 1.56101 1.35854 0.85036 0.76768 0.77815 0.79434 1.20897 1.22348 1.19252 1.21270 0.92661 0.93668 0.90339 1.24281 0.95441 0.99028 0.99581 0.84094 1.21265 0.92659 0.89424 1.02099 1.20165 1.03654 1.02629 0.86235 1.19850 0.99036 0.91136 0.91931 0.87195 0.93373 0.91878 0.84917 0.86793 0.84725 0.74051 0.92142 0.98879 0.94124 0.91747 0.96616 0.80280 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.24 71.98 0.74 0.22 16 2 C 0.11 0.46 7.21 86.38 0.62 1.08 16 3 N -0.38 -5.51 3.71 -339.53 -1.26 -6.76 16 4 N -0.03 -0.64 13.72 37.02 0.51 -0.13 16 5 N -0.25 -6.44 12.40 -52.21 -0.65 -7.08 16 6 C -0.05 -1.15 7.26 39.57 0.29 -0.86 16 7 C 0.02 0.40 9.64 22.80 0.22 0.62 16 8 C -0.15 -2.81 5.87 -20.13 -0.12 -2.92 16 9 C 0.56 14.68 7.76 86.75 0.67 15.35 16 10 O -0.58 -20.95 15.88 -3.94 -0.06 -21.02 16 11 N -0.67 -14.79 5.51 -445.52 -2.46 -17.25 16 12 C 0.11 3.53 5.97 44.99 0.27 3.80 16 13 H 0.10 3.93 7.40 -2.39 -0.02 3.91 16 14 C -0.17 -5.99 7.06 -9.89 -0.07 -6.06 16 15 H 0.13 3.82 8.14 -2.39 -0.02 3.80 16 16 C 0.19 9.01 5.70 86.53 0.49 9.50 16 17 N -0.62 -31.50 3.38 -688.16 -2.33 -33.83 16 18 C -0.24 -13.24 10.35 84.04 0.87 -12.37 16 19 H 0.08 4.36 7.84 -2.91 -0.02 4.33 16 20 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 21 N -0.95 -56.76 10.86 21.65 0.24 -56.52 16 22 Si 0.98 44.93 29.56 68.60 2.03 46.96 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.15 5.99 7.04 86.53 0.61 6.60 16 27 C -0.16 -5.13 7.06 -9.89 -0.07 -5.20 16 28 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 29 C -0.03 -0.32 9.46 22.30 0.21 -0.11 16 30 C -0.11 -0.85 9.97 22.07 0.22 -0.63 16 31 C 0.10 1.61 6.93 39.16 0.27 1.89 16 32 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.06 0.24 8.14 -2.38 -0.02 0.23 16 35 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.13 3.51 7.62 -2.91 -0.02 3.49 16 38 H 0.42 5.45 6.82 -92.71 -0.63 4.82 16 39 H 0.06 3.28 6.51 -2.39 -0.02 3.27 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.18 0.40 6.36 -2.91 -0.02 0.38 16 45 H 0.19 -0.16 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -81.78 379.62 2.11 -79.67 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.40 Total: 8.19 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.68 Total: 7.77 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -5.94 Total: -121.58 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.06 Total: -21.02 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -81.78 2.11 -79.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962513665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.030 kcal (2) G-P(sol) polarization free energy of solvation -81.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds