Wall clock time and date at job start Wed Apr 1 2020 00:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46560 * 2 1 4 4 N 1.46497 * 109.47158 * 120.00030 * 2 1 3 5 5 C 1.34781 * 120.00373 * 274.99860 * 4 2 1 6 6 O 1.21612 * 119.99552 * 0.02562 * 5 4 2 7 7 C 1.47312 * 120.00159 * 180.02562 * 5 4 2 8 8 C 1.37923 * 126.80263 * 0.14304 * 7 5 4 9 9 N 1.34199 * 107.89103 * 180.24688 * 8 7 5 10 10 H 0.96996 * 125.16645 * 179.79650 * 9 8 7 11 11 N 1.39779 * 109.66964 * 359.75918 * 9 8 7 12 12 C 1.31387 * 109.06735 * 359.97438 * 11 9 8 13 13 C 1.48239 * 126.51004 * 179.97438 * 12 11 9 14 14 C 1.39376 * 119.73393 * 335.02767 * 13 12 11 15 15 C 1.38385 * 119.06719 * 180.22685 * 14 13 12 16 16 C 1.38795 * 118.51511 * 359.52940 * 15 14 13 17 17 C 1.38257 * 119.37286 * 0.45116 * 16 15 14 18 18 N 1.31760 * 120.89536 * 359.79342 * 17 16 15 19 19 C 1.52997 * 109.46782 * 240.00722 * 2 1 3 20 20 C 1.53939 * 113.73982 * 158.74198 * 19 2 1 21 21 N 1.47811 * 86.03515 * 222.07846 * 20 19 2 22 22 C 1.36945 * 134.45761 * 204.64059 * 21 20 19 23 23 H 1.07999 * 119.99885 * 173.34565 * 22 21 20 24 24 C 1.38810 * 120.00138 * 353.35223 * 22 21 20 25 25 N 1.31624 * 119.99770 * 5.05592 * 24 22 21 26 26 Si 1.86795 * 120.00165 * 185.06305 * 24 22 21 27 27 H 1.48501 * 109.47298 * 94.98432 * 26 24 22 28 28 H 1.48499 * 109.47143 * 214.98429 * 26 24 22 29 29 H 1.48504 * 109.47026 * 334.98205 * 26 24 22 30 30 C 1.47579 * 91.05125 * 24.55032 * 21 20 19 31 31 H 1.08993 * 109.46919 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47011 * 299.99502 * 1 2 3 33 33 H 1.08997 * 109.47219 * 59.99420 * 1 2 3 34 34 H 0.96996 * 119.99579 * 95.00132 * 4 2 1 35 35 H 1.07993 * 126.05460 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.46899 * 359.95560 * 14 13 12 37 37 H 1.07996 * 120.74803 * 179.72789 * 15 14 13 38 38 H 1.08000 * 120.31797 * 180.21903 * 16 15 14 39 39 H 1.07993 * 119.55446 * 179.76876 * 17 16 15 40 40 H 1.09000 * 112.94181 * 290.32821 * 19 2 1 41 41 H 1.08997 * 113.77215 * 336.34024 * 20 19 2 42 42 H 1.08999 * 113.77358 * 107.74321 * 20 19 2 43 43 H 0.97001 * 119.99645 * 180.02562 * 25 24 22 44 44 H 1.09007 * 113.76643 * 221.15709 * 30 21 20 45 45 H 1.08996 * 113.87506 * 89.76756 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3572 6 8 1.8575 1.1616 2.4119 7 6 2.6388 -0.7126 3.5598 8 6 3.0080 -2.0381 3.6557 9 7 3.3897 -2.2692 4.9213 10 1 3.6962 -3.1227 5.2654 11 7 3.2792 -1.0929 5.6683 12 6 2.8357 -0.1309 4.8910 13 6 2.5769 1.2741 5.2867 14 6 2.2945 1.5766 6.6176 15 6 2.0504 2.8922 6.9708 16 6 2.1064 3.8649 5.9824 17 6 2.3928 3.4943 4.6816 18 7 2.6164 2.2335 4.3710 19 6 2.0400 -0.7211 -1.2493 20 6 3.4847 -0.3519 -1.6317 21 7 2.9977 -0.3174 -3.0269 22 6 3.5874 -0.4754 -4.2528 23 1 2.9788 -0.5087 -5.1444 24 6 4.9671 -0.5928 -4.3493 25 7 5.7005 -0.6524 -3.2580 26 14 5.7830 -0.6659 -6.0281 27 1 6.2262 0.6954 -6.4228 28 1 6.9586 -1.5712 -5.9680 29 1 4.8129 -1.1800 -7.0280 30 6 1.6213 -0.0470 -2.5684 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6317 1.1525 35 1 2.9888 -2.7627 2.8552 36 1 2.2623 0.7948 7.3620 37 1 1.8246 3.1565 7.9933 38 1 1.9243 4.9011 6.2264 39 1 2.4334 4.2483 3.9096 40 1 1.8528 -1.7947 -1.2264 41 1 3.8047 0.6192 -1.2540 42 1 4.2070 -1.1445 -1.4368 43 1 6.6647 -0.7341 -3.3255 44 1 0.8585 -0.5968 -3.1200 45 1 1.3907 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969819105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:59 Heat of formation + Delta-G solvation = 115.358960 kcal Electronic energy + Delta-G solvation = -28862.878353 eV Core-core repulsion = 24883.261099 eV Total energy + Delta-G solvation = -3979.617253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.19092 -40.69737 -40.52884 -39.24829 -35.94550 -34.16382 -33.90344 -33.28828 -32.38478 -31.02480 -30.47507 -29.27859 -26.58281 -25.64607 -25.20980 -24.55158 -24.08423 -22.54192 -21.44504 -21.11923 -20.43741 -19.26691 -18.68752 -17.68358 -17.32028 -17.06270 -16.89535 -16.85236 -16.47754 -16.10865 -15.71201 -15.36199 -15.19614 -14.97498 -14.66481 -14.64198 -14.44765 -14.10125 -13.99178 -13.55097 -13.35760 -13.21179 -13.03962 -12.86294 -12.67250 -12.63796 -12.48157 -12.16511 -11.93991 -11.67781 -11.41712 -11.26342 -11.18301 -10.85421 -10.77644 -10.57871 -10.06639 -9.96850 -9.75237 -9.47838 -8.87996 -7.89974 -5.22197 -0.19386 0.45982 0.61120 1.24836 1.45175 1.47927 1.56372 1.69912 2.38821 2.49007 2.64277 3.02755 3.09565 3.30788 3.44086 3.57970 3.80853 3.87881 4.03399 4.08542 4.14824 4.23469 4.25488 4.38562 4.42590 4.48293 4.62616 4.66148 4.68190 4.79858 4.86114 4.90693 4.94967 5.06518 5.09689 5.22008 5.24433 5.29580 5.31274 5.40987 5.55893 5.67006 5.79565 5.82932 5.95888 6.20352 6.39977 6.89206 6.93660 7.20092 7.62600 7.63522 8.60201 9.27588 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.002508 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.436891 B =11161.281413 C =11492.753020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.167 3.833 3 H 0.053 0.947 4 N -0.713 5.713 5 C 0.578 3.422 6 O -0.543 6.543 7 C -0.295 4.295 8 C 0.133 3.867 9 N -0.442 5.442 10 H 0.464 0.536 11 N -0.291 5.291 12 C 0.150 3.850 13 C 0.153 3.847 14 C -0.145 4.145 15 C -0.081 4.081 16 C -0.154 4.154 17 C 0.076 3.924 18 N -0.451 5.451 19 C -0.106 4.106 20 C 0.173 3.827 21 N -0.645 5.645 22 C -0.234 4.234 23 H 0.085 0.915 24 C -0.070 4.070 25 N -0.952 5.952 26 Si 0.976 3.024 27 H -0.292 1.292 28 H -0.294 1.294 29 H -0.264 1.264 30 C 0.129 3.871 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.407 0.593 35 H 0.235 0.765 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.109 0.891 41 H -0.001 1.001 42 H 0.039 0.961 43 H 0.247 0.753 44 H 0.065 0.935 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 -2.116 23.085 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.061 3.939 3 H 0.071 0.929 4 N -0.366 5.366 5 C 0.365 3.635 6 O -0.419 6.419 7 C -0.311 4.311 8 C -0.018 4.018 9 N -0.151 5.151 10 H 0.313 0.687 11 N -0.114 5.114 12 C -0.019 4.019 13 C 0.015 3.985 14 C -0.167 4.167 15 C -0.107 4.107 16 C -0.174 4.174 17 C -0.083 4.083 18 N -0.160 5.160 19 C -0.125 4.125 20 C 0.047 3.953 21 N -0.372 5.372 22 C -0.362 4.362 23 H 0.103 0.897 24 C -0.262 4.262 25 N -0.601 5.601 26 Si 0.805 3.195 27 H -0.219 1.219 28 H -0.220 1.220 29 H -0.188 1.188 30 C 0.004 3.996 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.243 0.757 35 H 0.252 0.748 36 H 0.166 0.834 37 H 0.192 0.808 38 H 0.187 0.813 39 H 0.178 0.822 40 H 0.127 0.873 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.877 -1.881 23.181 25.267 hybrid contribution 0.876 -0.127 -0.955 1.302 sum -9.000 -2.008 22.226 24.063 Atomic orbital electron populations 1.22015 0.93741 1.02902 1.01763 1.20683 0.94646 0.95629 0.82925 0.92884 1.45731 1.68176 1.14124 1.08589 1.17445 0.77500 0.86138 0.82429 1.90838 1.50362 1.15964 1.84761 1.21402 1.20026 0.94895 0.94755 1.23652 0.92428 0.96325 0.89387 1.45952 1.51073 1.11233 1.06836 0.68737 1.77168 1.23574 0.92001 1.18662 1.21543 0.97045 0.92244 0.91023 1.18693 0.99844 0.89617 0.90344 1.22275 0.99803 0.99145 0.95435 1.21932 0.95719 0.91368 1.01647 1.22638 0.98927 1.02564 0.93266 1.23124 0.96053 0.92215 0.96882 1.67816 1.10747 1.01355 1.36100 1.23428 0.95933 1.00634 0.92537 1.22079 0.94013 0.96166 0.82999 1.46452 1.06104 1.82642 1.01956 1.19457 0.90375 1.41514 0.84870 0.89706 1.25673 0.96694 1.03142 1.00738 1.70036 1.04465 1.57689 1.27944 0.85088 0.78000 0.76962 0.79496 1.21929 1.22022 1.18821 1.22684 0.87672 0.97403 0.91887 0.90671 0.93706 0.91127 0.75746 0.74845 0.83393 0.80849 0.81262 0.82211 0.87304 0.98346 0.94262 0.94401 0.91637 0.94315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.31 71.98 0.67 -3.09 16 2 C 0.17 5.20 2.38 44.99 0.11 5.31 16 3 H 0.05 2.06 7.42 -2.38 -0.02 2.04 16 4 N -0.71 -19.60 5.07 -445.90 -2.26 -21.86 16 5 C 0.58 18.68 7.77 86.63 0.67 19.36 16 6 O -0.54 -21.72 13.34 -4.07 -0.05 -21.77 16 7 C -0.30 -7.98 6.31 -18.78 -0.12 -8.10 16 8 C 0.13 2.14 11.50 84.26 0.97 3.11 16 9 N -0.44 -6.60 7.20 -56.43 -0.41 -7.01 16 10 H 0.46 2.86 8.96 -213.53 -1.91 0.95 16 11 N -0.29 -6.83 12.53 -44.55 -0.56 -7.39 16 12 C 0.15 4.30 7.11 44.06 0.31 4.61 16 13 C 0.15 4.55 6.62 41.95 0.28 4.83 16 14 C -0.15 -3.18 9.75 22.58 0.22 -2.96 16 15 C -0.08 -1.32 10.16 22.44 0.23 -1.09 16 16 C -0.15 -2.69 10.11 22.41 0.23 -2.47 16 17 C 0.08 1.96 11.17 84.71 0.95 2.91 16 18 N -0.45 -14.99 7.08 -184.90 -1.31 -16.30 16 19 C -0.11 -3.68 3.47 -10.14 -0.04 -3.71 16 20 C 0.17 8.36 6.99 86.44 0.60 8.97 16 21 N -0.65 -33.58 3.70 -716.24 -2.65 -36.23 16 22 C -0.23 -13.32 10.70 84.03 0.90 -12.42 16 23 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 24 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 25 N -0.95 -58.73 11.51 21.65 0.25 -58.48 16 26 Si 0.98 46.41 29.56 68.60 2.03 48.44 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 30 C 0.13 5.08 7.64 86.48 0.66 5.74 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.07 1.74 7.52 -2.39 -0.02 1.72 16 34 H 0.41 8.35 7.56 -92.71 -0.70 7.64 16 35 H 0.24 1.44 7.48 -2.91 -0.02 1.42 16 36 H 0.15 2.70 8.04 -2.91 -0.02 2.68 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 41 H 0.00 -0.07 7.99 -2.39 -0.02 -0.09 16 42 H 0.04 2.08 7.37 -2.39 -0.02 2.06 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 45 H 0.04 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -87.49 381.12 0.58 -86.91 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -1.57 Total: 16.29 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.11 Total: 17.41 kcal Atomic # 7 Polarization: -140.34 SS G_CDS: -6.94 Total: -147.28 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -87.49 0.58 -86.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969819105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.274 kcal (2) G-P(sol) polarization free energy of solvation -87.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds