Wall clock time and date at job start Wed Apr 1 2020 00:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21616 * 120.00099 * 0.02562 * 5 4 2 7 7 C 1.47321 * 119.99910 * 179.97438 * 5 4 2 8 8 C 1.37907 * 126.80457 * 0.03408 * 7 5 4 9 9 N 1.34196 * 107.89584 * 179.97438 * 8 7 5 10 10 H 0.96998 * 125.16539 * 179.97438 * 9 8 7 11 11 N 1.39774 * 109.66740 * 359.97438 * 9 8 7 12 12 C 1.31384 * 109.06398 * 359.70031 * 11 9 8 13 13 C 1.48250 * 126.50883 * 180.26152 * 12 11 9 14 14 C 1.39382 * 119.73159 * 334.94720 * 13 12 11 15 15 C 1.38386 * 119.06427 * 179.76720 * 14 13 12 16 16 C 1.38799 * 118.51191 * 0.49517 * 15 14 13 17 17 C 1.38251 * 119.37433 * 359.74572 * 16 15 14 18 18 N 1.31755 * 120.90125 * 359.97438 * 17 16 15 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 33 33 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.08003 * 126.05292 * 359.95613 * 8 7 5 36 36 H 1.07998 * 120.46957 * 0.02562 * 14 13 12 37 37 H 1.07998 * 120.74756 * 180.26439 * 15 14 13 38 38 H 1.08006 * 120.31085 * 179.72415 * 16 15 14 39 39 H 1.08003 * 119.55151 * 179.97438 * 17 16 15 40 40 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 44 44 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 45 45 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1618 -2.4117 7 6 2.6388 -0.7127 -3.5598 8 6 3.0050 -2.0387 -3.6565 9 7 3.3925 -2.2683 -4.9206 10 1 3.7015 -3.1212 -5.2640 11 7 3.2833 -1.0918 -5.6672 12 6 2.8281 -0.1329 -4.8929 13 6 2.5616 1.2702 -5.2906 14 6 3.2445 1.8238 -6.3722 15 6 2.9814 3.1332 -6.7345 16 6 2.0506 3.8507 -5.9960 17 6 1.4137 3.2405 -4.9314 18 7 1.6784 1.9903 -4.6109 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 2.9839 -2.7640 -2.8565 36 1 3.9657 1.2377 -6.9225 37 1 3.4917 3.5879 -7.5707 38 1 1.8263 4.8761 -6.2505 39 1 0.6892 3.7963 -4.3546 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969819133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:02 Heat of formation + Delta-G solvation = 150.696726 kcal Electronic energy + Delta-G solvation = -28993.483370 eV Core-core repulsion = 25015.398477 eV Total energy + Delta-G solvation = -3978.084893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44762 -39.93261 -39.48900 -38.18299 -34.78612 -33.20679 -32.53585 -32.42111 -31.38977 -30.28977 -29.56461 -27.68242 -25.39220 -24.51100 -24.07463 -23.67576 -22.82750 -21.15748 -20.54875 -20.02560 -19.39413 -18.44348 -17.43286 -16.98876 -16.42805 -16.17988 -15.96999 -15.77503 -15.32088 -15.22862 -14.34694 -14.29673 -14.12450 -13.86346 -13.75038 -13.61793 -13.37489 -13.14041 -12.88507 -12.78158 -12.17094 -11.98885 -11.83281 -11.75355 -11.47158 -11.32712 -10.86725 -10.59318 -10.55577 -10.30869 -10.20745 -9.96860 -9.65996 -9.20771 -9.18893 -9.16330 -9.09446 -8.87722 -8.79527 -8.64354 -7.13179 -6.27237 -3.20754 0.57139 1.18236 1.31050 2.07207 2.29502 3.36193 3.40643 3.47685 3.57950 3.66392 3.78491 3.83652 4.24828 4.58256 4.61488 4.67473 4.73919 4.76969 4.90771 4.94722 4.98024 5.14094 5.18491 5.26827 5.35024 5.50524 5.57124 5.58269 5.71356 5.81270 5.82500 5.92823 5.99724 6.04867 6.11197 6.27481 6.30456 6.35093 6.38440 6.48818 6.51738 6.72664 6.80118 6.97652 7.09790 7.16275 7.79337 7.95411 8.25825 8.60012 9.00070 9.52613 10.40150 11.22770 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.002789 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.021624 B =10036.221188 C =10344.689136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.089 0.911 4 N -0.726 5.726 5 C 0.581 3.419 6 O -0.500 6.500 7 C -0.252 4.252 8 C 0.099 3.901 9 N -0.461 5.461 10 H 0.445 0.555 11 N -0.276 5.276 12 C 0.171 3.829 13 C 0.186 3.814 14 C -0.142 4.142 15 C -0.086 4.086 16 C -0.166 4.166 17 C 0.102 3.898 18 N -0.407 5.407 19 C -0.138 4.138 20 C 0.134 3.866 21 N -0.630 5.630 22 C -0.302 4.302 23 H 0.082 0.918 24 C -0.026 4.026 25 N -0.936 5.936 26 Si 1.071 2.929 27 H -0.296 1.296 28 H -0.294 1.294 29 H -0.287 1.287 30 C 0.104 3.896 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.392 0.608 35 H 0.191 0.809 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.158 0.842 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 0.221 -27.751 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.107 0.893 4 N -0.378 5.378 5 C 0.367 3.633 6 O -0.373 6.373 7 C -0.267 4.267 8 C -0.050 4.050 9 N -0.168 5.168 10 H 0.290 0.710 11 N -0.099 5.099 12 C 0.002 3.998 13 C 0.047 3.953 14 C -0.163 4.163 15 C -0.112 4.112 16 C -0.186 4.186 17 C -0.057 4.057 18 N -0.115 5.115 19 C -0.158 4.158 20 C 0.007 3.993 21 N -0.358 5.358 22 C -0.428 4.428 23 H 0.100 0.900 24 C -0.225 4.225 25 N -0.578 5.578 26 Si 0.904 3.096 27 H -0.223 1.223 28 H -0.223 1.223 29 H -0.214 1.214 30 C -0.022 4.022 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.225 0.775 35 H 0.208 0.792 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.176 0.824 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.519 0.260 -28.442 29.180 hybrid contribution -1.027 -0.328 0.572 1.220 sum -7.546 -0.068 -27.869 28.873 Atomic orbital electron populations 1.22112 0.95420 1.01742 1.02266 1.20911 0.93717 0.97380 0.82693 0.89306 1.45943 1.68651 1.13581 1.09584 1.17090 0.78024 0.86615 0.81576 1.90874 1.48291 1.14402 1.83767 1.21443 1.16778 0.93030 0.95481 1.23110 0.95977 0.97233 0.88706 1.45900 1.52382 1.11218 1.07278 0.71018 1.77253 1.23293 0.91384 1.17986 1.21297 0.96215 0.91896 0.90346 1.18360 0.94838 0.89833 0.92228 1.22069 1.00678 0.96221 0.97376 1.21473 0.96730 0.93773 0.99188 1.22314 0.97715 1.01349 0.97259 1.22821 0.97808 0.90771 0.94283 1.67901 1.12953 1.06700 1.23989 1.23535 0.98865 1.00153 0.93275 1.22258 0.89934 0.97169 0.89933 1.45991 1.04167 1.83743 1.01944 1.20162 0.92125 1.47376 0.83131 0.89981 1.25710 0.94246 0.99387 1.03142 1.70912 1.37286 1.52440 0.97181 0.83704 0.75655 0.76201 0.74065 1.22329 1.22251 1.21373 1.22823 0.94814 0.98472 0.86075 0.92842 0.91581 0.92305 0.77524 0.79233 0.84598 0.84677 0.84739 0.82447 0.88590 0.93616 0.94295 0.92972 0.93750 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.29 37.16 0.35 -1.64 16 2 C 0.16 2.25 2.47 -67.93 -0.17 2.08 16 3 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 4 N -0.73 -9.09 5.07 -54.91 -0.28 -9.37 16 5 C 0.58 8.39 7.77 -12.56 -0.10 8.29 16 6 O -0.50 -8.77 13.34 5.26 0.07 -8.70 16 7 C -0.25 -3.11 6.31 -102.95 -0.65 -3.76 16 8 C 0.10 0.79 11.50 -16.64 -0.19 0.60 16 9 N -0.46 -3.48 7.20 30.81 0.22 -3.26 16 10 H 0.45 1.61 8.96 -182.85 -1.64 -0.03 16 11 N -0.28 -3.08 12.53 34.57 0.43 -2.65 16 12 C 0.17 2.24 7.11 -80.57 -0.57 1.66 16 13 C 0.19 2.48 6.63 -82.96 -0.55 1.93 16 14 C -0.14 -1.50 9.75 -39.10 -0.38 -1.88 16 15 C -0.09 -0.73 10.17 -39.32 -0.40 -1.13 16 16 C -0.17 -1.42 10.11 -39.37 -0.40 -1.82 16 17 C 0.10 1.14 11.17 -17.58 -0.20 0.94 16 18 N -0.41 -5.81 7.07 -9.79 -0.07 -5.88 16 19 C -0.14 -2.26 3.67 -89.96 -0.33 -2.59 16 20 C 0.13 2.59 7.33 -8.50 -0.06 2.53 16 21 N -0.63 -15.62 3.69 -184.57 -0.68 -16.30 16 22 C -0.30 -8.81 11.08 -15.06 -0.17 -8.97 16 23 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 24 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 25 N -0.94 -29.92 13.70 55.49 0.76 -29.16 16 26 Si 1.07 27.30 25.16 -169.99 -4.28 23.02 16 27 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 28 H -0.29 -6.96 6.51 56.52 0.37 -6.60 16 29 H -0.29 -6.97 6.21 56.52 0.35 -6.62 16 30 C 0.10 2.19 5.27 -8.36 -0.04 2.15 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.39 3.77 7.56 -40.82 -0.31 3.47 16 35 H 0.19 0.74 7.48 -52.48 -0.39 0.34 16 36 H 0.14 1.23 8.04 -52.49 -0.42 0.81 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 40 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 44 H 0.04 0.97 7.44 -51.93 -0.39 0.58 16 45 H 0.05 1.08 4.73 -51.93 -0.25 0.83 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -38.83 373.36 -9.35 -48.18 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.20 Total: 0.97 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.96 Total: -2.50 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 0.39 Total: -66.60 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 27.30 SS G_CDS: -4.28 Total: 23.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.83 -9.35 -48.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969819133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.881 kcal (2) G-P(sol) polarization free energy of solvation -38.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds