Wall clock time and date at job start Wed Apr 1 2020 00:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21616 * 120.00099 * 0.02562 * 5 4 2 7 7 C 1.47321 * 119.99910 * 179.97438 * 5 4 2 8 8 C 1.37907 * 126.80457 * 0.03408 * 7 5 4 9 9 N 1.34196 * 107.89584 * 179.97438 * 8 7 5 10 10 H 0.96998 * 125.16539 * 179.97438 * 9 8 7 11 11 N 1.39774 * 109.66740 * 359.97438 * 9 8 7 12 12 C 1.31384 * 109.06398 * 359.70031 * 11 9 8 13 13 C 1.48250 * 126.50883 * 180.26152 * 12 11 9 14 14 C 1.39382 * 119.73159 * 334.94720 * 13 12 11 15 15 C 1.38386 * 119.06427 * 179.76720 * 14 13 12 16 16 C 1.38799 * 118.51191 * 0.49517 * 15 14 13 17 17 C 1.38251 * 119.37433 * 359.74572 * 16 15 14 18 18 N 1.31755 * 120.90125 * 359.97438 * 17 16 15 19 19 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 20 20 C 1.53504 * 114.20785 * 300.00220 * 19 2 1 21 21 N 1.47069 * 87.98363 * 220.34571 * 20 19 2 22 22 C 1.36941 * 136.05552 * 207.07801 * 21 20 19 23 23 H 1.08000 * 119.99396 * 7.56018 * 22 21 20 24 24 C 1.38806 * 119.99993 * 187.55101 * 22 21 20 25 25 N 1.31621 * 119.99759 * 174.37714 * 24 22 21 26 26 Si 1.86799 * 119.99972 * 354.38427 * 24 22 21 27 27 H 1.48501 * 109.46963 * 174.94900 * 26 24 22 28 28 H 1.48498 * 109.47184 * 294.94894 * 26 24 22 29 29 H 1.48507 * 109.47082 * 54.95224 * 26 24 22 30 30 C 1.47064 * 87.88742 * 27.34488 * 21 20 19 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 33 33 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 34 34 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 35 35 H 1.08003 * 126.05292 * 359.95613 * 8 7 5 36 36 H 1.07998 * 120.46957 * 0.02562 * 14 13 12 37 37 H 1.07998 * 120.74756 * 180.26439 * 15 14 13 38 38 H 1.08006 * 120.31085 * 179.72415 * 16 15 14 39 39 H 1.08003 * 119.55151 * 179.97438 * 17 16 15 40 40 H 1.09002 * 113.41395 * 73.19962 * 19 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 20 19 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 20 19 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 25 24 22 44 44 H 1.08993 * 113.47012 * 87.43421 * 30 21 20 45 45 H 1.09000 * 113.46758 * 217.87997 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1618 -2.4117 7 6 2.6388 -0.7127 -3.5598 8 6 3.0050 -2.0387 -3.6565 9 7 3.3925 -2.2683 -4.9206 10 1 3.7015 -3.1212 -5.2640 11 7 3.2833 -1.0918 -5.6672 12 6 2.8281 -0.1329 -4.8929 13 6 2.5616 1.2702 -5.2906 14 6 3.2445 1.8238 -6.3722 15 6 2.9814 3.1332 -6.7345 16 6 2.0506 3.8507 -5.9960 17 6 1.4137 3.2405 -4.9314 18 7 1.6784 1.9903 -4.6109 19 6 2.0401 -0.7212 1.2493 20 6 1.5899 -0.0845 2.5715 21 7 2.9390 -0.3444 3.0960 22 6 3.4927 -0.5600 4.3298 23 1 2.8558 -0.6814 5.1935 24 6 4.8722 -0.6227 4.4701 25 7 5.4081 -0.7189 5.6684 26 14 5.9681 -0.5704 2.9583 27 1 7.3914 -0.5289 3.3799 28 1 5.7314 -1.7821 2.1331 29 1 5.6528 0.6416 2.1600 30 6 3.4330 -0.2640 1.7131 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 2.9839 -2.7640 -2.8565 36 1 3.9657 1.2377 -6.9225 37 1 3.4917 3.5879 -7.5707 38 1 1.8263 4.8761 -6.2505 39 1 0.6892 3.7963 -4.3546 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969819133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:02 Heat of formation + Delta-G solvation = 120.997442 kcal Electronic energy + Delta-G solvation = -28994.771228 eV Core-core repulsion = 25015.398477 eV Total energy + Delta-G solvation = -3979.372751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.19769 -40.84361 -40.66127 -39.50459 -36.06800 -34.50095 -33.92462 -33.28829 -32.52449 -31.02698 -30.59464 -29.39627 -27.01497 -25.52583 -25.16726 -24.51442 -23.97710 -22.45537 -21.45777 -21.24686 -20.57899 -19.52498 -19.33612 -17.69511 -17.46357 -17.27444 -16.96661 -16.80453 -16.47532 -16.15925 -15.88054 -15.48655 -15.17389 -15.13544 -15.01465 -14.64268 -14.59744 -14.21399 -14.09028 -13.64659 -13.53700 -13.22110 -13.15796 -13.05608 -12.66373 -12.42981 -12.33302 -12.16441 -12.08383 -11.63197 -11.29084 -11.26169 -11.08173 -10.82823 -10.77436 -10.59581 -10.06062 -9.98406 -9.80108 -9.48069 -9.21764 -8.61160 -5.47076 -0.19650 0.45329 0.61380 1.25056 1.36366 1.48039 1.66250 1.69765 2.35673 2.53256 2.61901 3.00744 3.03509 3.07932 3.19783 3.53579 3.57980 3.86716 3.94372 4.08351 4.13983 4.22504 4.25022 4.27841 4.39475 4.45509 4.50197 4.57095 4.63846 4.66707 4.70721 4.74235 4.85403 4.86808 4.96659 5.07129 5.16758 5.22496 5.24312 5.31450 5.37522 5.49791 5.75300 5.81656 5.95682 6.21007 6.39916 6.70606 6.87186 7.18042 7.33154 7.61631 8.28976 8.90442 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.002789 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.021624 B =10036.221188 C =10344.689136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.168 3.832 3 H 0.063 0.937 4 N -0.715 5.715 5 C 0.579 3.421 6 O -0.541 6.541 7 C -0.296 4.296 8 C 0.134 3.866 9 N -0.443 5.443 10 H 0.463 0.537 11 N -0.293 5.293 12 C 0.150 3.850 13 C 0.153 3.847 14 C -0.148 4.148 15 C -0.083 4.083 16 C -0.156 4.156 17 C 0.078 3.922 18 N -0.445 5.445 19 C -0.099 4.099 20 C 0.129 3.871 21 N -0.663 5.663 22 C -0.289 4.289 23 H 0.052 0.948 24 C -0.087 4.087 25 N -0.972 5.972 26 Si 1.109 2.891 27 H -0.306 1.306 28 H -0.261 1.261 29 H -0.273 1.273 30 C 0.094 3.906 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.409 0.591 35 H 0.238 0.762 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.246 0.754 44 H 0.038 0.962 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -1.043 -30.904 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.063 3.937 3 H 0.081 0.919 4 N -0.368 5.368 5 C 0.367 3.633 6 O -0.417 6.417 7 C -0.311 4.311 8 C -0.017 4.017 9 N -0.151 5.151 10 H 0.312 0.688 11 N -0.116 5.116 12 C -0.018 4.018 13 C 0.015 3.985 14 C -0.170 4.170 15 C -0.109 4.109 16 C -0.176 4.176 17 C -0.081 4.081 18 N -0.155 5.155 19 C -0.119 4.119 20 C 0.003 3.997 21 N -0.391 5.391 22 C -0.416 4.416 23 H 0.070 0.930 24 C -0.279 4.279 25 N -0.618 5.618 26 Si 0.935 3.065 27 H -0.234 1.234 28 H -0.187 1.187 29 H -0.199 1.199 30 C -0.030 4.030 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.254 0.746 36 H 0.163 0.837 37 H 0.188 0.812 38 H 0.186 0.814 39 H 0.182 0.818 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.810 -1.055 -31.657 32.399 hybrid contribution -1.053 0.089 1.536 1.864 sum -7.863 -0.966 -30.122 31.146 Atomic orbital electron populations 1.22024 0.93820 1.02945 1.01900 1.20620 0.94750 0.95875 0.82482 0.91909 1.45733 1.68370 1.14268 1.08473 1.17408 0.77326 0.86285 0.82325 1.90854 1.50112 1.16260 1.84451 1.21385 1.20121 0.94943 0.94682 1.23689 0.92428 0.96211 0.89380 1.45974 1.50911 1.11175 1.07076 0.68751 1.77189 1.23725 0.92118 1.18544 1.21522 0.96847 0.92335 0.91100 1.18693 0.95820 0.90519 0.93449 1.22277 1.00580 0.97298 0.96814 1.21921 0.96275 0.92951 0.99712 1.22646 0.96518 1.02646 0.95785 1.23154 0.98802 0.90520 0.95621 1.67813 1.14243 1.08111 1.25307 1.23237 0.94708 1.01330 0.92579 1.22486 0.87935 0.98035 0.91201 1.46147 1.07045 1.84109 1.01828 1.20056 0.91953 1.45148 0.84462 0.93009 1.27022 0.96236 0.99815 1.04782 1.71010 1.37393 1.55727 0.97656 0.83262 0.73379 0.78103 0.71757 1.23417 1.18661 1.19942 1.23003 0.97531 0.98341 0.84164 0.90796 0.91356 0.93324 0.75496 0.74593 0.83670 0.81179 0.81385 0.81755 0.86078 0.92495 0.93629 0.94476 0.94442 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.29 71.98 0.67 -2.73 16 2 C 0.17 4.43 2.47 44.99 0.11 4.54 16 3 H 0.06 2.04 7.32 -2.39 -0.02 2.02 16 4 N -0.72 -16.04 5.07 -445.90 -2.26 -18.30 16 5 C 0.58 16.15 7.77 86.63 0.67 16.82 16 6 O -0.54 -19.31 13.34 -4.08 -0.05 -19.37 16 7 C -0.30 -6.87 6.31 -18.78 -0.12 -6.99 16 8 C 0.13 1.66 11.50 84.25 0.97 2.63 16 9 N -0.44 -5.33 7.20 -56.44 -0.41 -5.73 16 10 H 0.46 1.66 8.96 -213.53 -1.91 -0.25 16 11 N -0.29 -6.12 12.53 -44.54 -0.56 -6.68 16 12 C 0.15 3.87 7.11 44.06 0.31 4.18 16 13 C 0.15 4.16 6.63 41.95 0.28 4.43 16 14 C -0.15 -3.05 9.75 22.58 0.22 -2.83 16 15 C -0.08 -1.26 10.17 22.44 0.23 -1.04 16 16 C -0.16 -2.45 10.11 22.41 0.23 -2.23 16 17 C 0.08 1.76 11.17 84.71 0.95 2.71 16 18 N -0.45 -13.15 7.07 -184.89 -1.31 -14.46 16 19 C -0.10 -2.93 3.67 -10.37 -0.04 -2.97 16 20 C 0.13 4.74 7.33 83.18 0.61 5.35 16 21 N -0.66 -32.13 3.69 -737.86 -2.72 -34.85 16 22 C -0.29 -17.04 11.08 84.03 0.93 -16.11 16 23 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 24 C -0.09 -5.30 5.50 84.86 0.47 -4.83 16 25 N -0.97 -63.91 13.70 21.65 0.30 -63.61 16 26 Si 1.11 54.58 25.16 68.60 1.73 56.31 16 27 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 28 H -0.26 -11.29 6.51 99.48 0.65 -10.65 16 29 H -0.27 -12.70 6.21 99.48 0.62 -12.09 16 30 C 0.09 3.77 5.27 83.27 0.44 4.21 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 1.53 7.48 -2.39 -0.02 1.51 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.41 6.13 7.56 -92.71 -0.70 5.43 16 35 H 0.24 0.45 7.48 -2.91 -0.02 0.43 16 36 H 0.15 2.54 8.04 -2.91 -0.02 2.52 16 37 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 39 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 40 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 43 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 44 H 0.04 1.58 7.44 -2.39 -0.02 1.56 16 45 H 0.05 2.04 4.73 -2.39 -0.01 2.03 16 Total: -1.00 -89.97 373.36 -0.11 -90.09 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -1.75 Total: 11.46 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 6.93 Total: 5.15 kcal Atomic # 7 Polarization: -136.68 SS G_CDS: -6.96 Total: -143.64 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 54.58 SS G_CDS: 1.73 Total: 56.31 kcal Total: -89.97 -0.11 -90.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969819133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.083 kcal (2) G-P(sol) polarization free energy of solvation -89.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds