Wall clock time and date at job start Wed Apr 1 2020 00:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21602 * 120.00193 * 359.97438 * 5 4 2 7 7 C 1.47420 * 119.99822 * 179.97438 * 5 4 2 8 8 C 1.41326 * 126.40650 * 359.68461 * 7 5 4 9 9 N 1.30478 * 108.06187 * 179.85543 * 8 7 5 10 10 N 1.39933 * 108.91663 * 0.40981 * 9 8 7 11 11 C 1.40173 * 125.77213 * 179.73318 * 10 9 8 12 12 C 1.39257 * 120.48568 * 0.02562 * 11 10 9 13 13 C 1.38512 * 118.36405 * 179.97438 * 12 11 10 14 14 C 1.38276 * 119.23129 * 0.02562 * 13 12 11 15 15 N 1.31859 * 120.91155 * 359.97438 * 14 13 12 16 16 C 1.31831 * 121.79218 * 359.73333 * 15 14 13 17 17 C 1.34536 * 108.45837 * 359.73676 * 10 9 8 18 18 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 19 19 C 1.53497 * 114.20590 * 174.71570 * 18 2 1 20 20 N 1.47063 * 87.98756 * 220.34354 * 19 18 2 21 21 C 1.36933 * 136.06152 * 207.08176 * 20 19 18 22 22 H 1.08001 * 119.99949 * 6.49131 * 21 20 19 23 23 C 1.38805 * 120.00422 * 186.49224 * 21 20 19 24 24 N 1.31621 * 119.99799 * 6.27156 * 23 21 20 25 25 Si 1.86798 * 120.00357 * 186.27268 * 23 21 20 26 26 H 1.48511 * 109.47134 * 265.01290 * 25 23 21 27 27 H 1.48498 * 109.47125 * 25.00956 * 25 23 21 28 28 H 1.48499 * 109.47537 * 145.01308 * 25 23 21 29 29 C 1.47070 * 87.88273 * 27.34326 * 20 19 18 30 30 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 31 31 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 32 32 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 33 33 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 34 34 H 1.08004 * 125.97189 * 0.02615 * 8 7 5 35 35 H 1.07997 * 120.82008 * 359.95233 * 12 11 10 36 36 H 1.07994 * 120.38534 * 180.02562 * 13 12 11 37 37 H 1.08002 * 119.54244 * 179.97438 * 14 13 12 38 38 H 1.07998 * 119.66226 * 180.28504 * 16 15 14 39 39 H 1.07991 * 126.30961 * 180.02562 * 17 10 9 40 40 H 1.08994 * 113.41243 * 307.91400 * 18 2 1 41 41 H 1.09000 * 113.46682 * 105.56058 * 19 18 2 42 42 H 1.09008 * 113.52408 * 335.13690 * 19 18 2 43 43 H 0.97005 * 119.99736 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.46411 * 87.43633 * 29 20 19 45 45 H 1.09003 * 113.46855 * 217.87664 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1616 2.4117 7 6 2.6381 -0.7135 3.5608 8 6 3.0048 -2.0753 3.6521 9 7 3.3886 -2.3097 4.8769 10 7 3.2789 -1.1293 5.6204 11 6 3.5939 -0.9841 6.9786 12 6 4.0635 -2.0689 7.7148 13 6 4.3618 -1.8760 9.0535 14 6 4.1846 -0.6230 9.6110 15 7 3.7380 0.3839 8.8863 16 6 3.4477 0.2445 7.6079 17 6 2.8198 -0.1574 4.8114 18 6 2.0399 -0.7212 -1.2494 19 6 3.5641 -0.6739 -1.4253 20 7 3.3395 -0.4640 -2.8634 21 6 4.0309 -0.7208 -4.0172 22 1 4.9487 -1.2889 -3.9816 23 6 3.5522 -0.2509 -5.2324 24 7 2.5037 0.5440 -5.2637 25 14 4.3961 -0.7468 -6.8234 26 1 5.3783 0.2982 -7.2094 27 1 5.1001 -2.0397 -6.6283 28 1 3.3812 -0.8930 -7.8975 29 6 2.0485 0.1492 -2.5168 30 1 -0.3634 -1.0240 0.0874 31 1 -0.3633 0.5876 0.8431 32 1 -0.3633 0.4362 -0.9304 33 1 2.2491 -1.6318 1.1524 34 1 2.9754 -2.7955 2.8478 35 1 4.1916 -3.0369 7.2533 36 1 4.7285 -2.6945 9.6550 37 1 4.4152 -0.4671 10.6546 38 1 3.0885 1.0937 7.0457 39 1 2.6292 0.8687 5.0889 40 1 1.6048 -1.7111 -1.3859 41 1 4.0570 -1.6187 -1.1962 42 1 4.0330 0.1767 -0.9304 43 1 2.1694 0.8726 -6.1130 44 1 2.1169 1.2171 -2.3095 45 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969820908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:21 Heat of formation + Delta-G solvation = 143.396959 kcal Electronic energy + Delta-G solvation = -27904.960271 eV Core-core repulsion = 23926.558836 eV Total energy + Delta-G solvation = -3978.401435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18516 -40.50004 -39.48498 -38.05055 -34.83854 -34.60881 -32.90097 -32.21104 -31.11924 -30.51881 -29.50847 -27.52094 -25.22049 -24.52318 -24.46838 -24.00688 -22.72691 -21.56770 -20.94913 -20.15089 -19.42168 -18.69316 -17.52998 -16.94457 -16.74732 -16.26181 -16.06293 -15.92269 -15.35945 -14.81588 -14.71104 -14.56992 -14.27732 -14.01453 -13.95163 -13.74828 -13.57923 -13.22175 -13.11723 -12.73639 -12.30526 -12.07639 -11.63971 -11.58739 -11.35124 -11.27297 -11.22628 -10.90769 -10.71410 -10.35983 -10.34569 -10.24088 -10.07587 -9.85349 -9.70084 -9.64111 -9.20734 -8.91611 -8.77697 -8.66582 -6.87822 -5.78739 -3.09479 0.03434 0.54605 1.44781 1.67360 1.84473 3.17117 3.28436 3.38976 3.41250 3.43859 3.46190 3.76611 3.86465 4.03541 4.29981 4.31764 4.45061 4.45977 4.72966 4.78846 4.87123 5.00897 5.12543 5.21106 5.35425 5.39878 5.40644 5.45258 5.56154 5.69787 5.79114 5.82664 5.96413 6.00478 6.10973 6.30192 6.40135 6.43497 6.45964 6.60322 6.66786 6.81831 7.00546 7.18649 7.25890 7.34927 7.52370 7.67987 7.96693 8.35923 9.03310 9.69822 10.64780 11.40096 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.001836 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.479406 B =15243.953397 C =15772.508252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.089 0.911 4 N -0.712 5.712 5 C 0.592 3.408 6 O -0.548 6.548 7 C -0.270 4.270 8 C 0.096 3.904 9 N -0.292 5.292 10 N -0.314 5.314 11 C 0.107 3.893 12 C -0.072 4.072 13 C -0.147 4.147 14 C 0.088 3.912 15 N -0.456 5.456 16 C 0.089 3.911 17 C 0.124 3.876 18 C -0.155 4.155 19 C 0.125 3.875 20 N -0.610 5.610 21 C -0.219 4.219 22 H 0.081 0.919 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.289 1.289 29 C 0.175 3.825 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.200 0.800 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.194 0.806 40 H 0.092 0.908 41 H 0.037 0.963 42 H 0.031 0.969 43 H 0.254 0.746 44 H 0.031 0.969 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -6.254 28.989 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 H 0.107 0.893 4 N -0.362 5.362 5 C 0.378 3.622 6 O -0.426 6.426 7 C -0.283 4.283 8 C -0.092 4.092 9 N -0.109 5.109 10 N -0.087 5.087 11 C 0.012 3.988 12 C -0.100 4.100 13 C -0.167 4.167 14 C -0.069 4.069 15 N -0.164 5.164 16 C -0.072 4.072 17 C -0.022 4.022 18 C -0.175 4.175 19 C -0.002 4.002 20 N -0.335 5.335 21 C -0.347 4.347 22 H 0.098 0.902 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.216 1.216 29 C 0.049 3.951 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.231 0.769 34 H 0.216 0.784 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.211 0.789 40 H 0.111 0.889 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.351 -5.456 29.893 30.389 hybrid contribution 0.454 -0.845 -1.953 2.176 sum 0.103 -6.300 27.940 28.641 Atomic orbital electron populations 1.22116 0.95401 1.01692 1.02438 1.21021 0.93751 0.97405 0.82630 0.89295 1.45889 1.66894 1.13908 1.09465 1.17107 0.77165 0.85905 0.81997 1.90784 1.51383 1.15403 1.85067 1.20471 1.17629 0.94875 0.95373 1.24323 0.94699 0.95487 0.94735 1.77248 1.24840 1.03909 1.04922 1.45514 1.48454 1.08004 1.06733 1.18707 1.02330 0.96834 0.80899 1.21430 0.95833 0.98876 0.93828 1.22165 1.00393 0.99383 0.94780 1.22939 0.95017 0.88451 1.00497 1.67801 1.10146 1.33190 1.05281 1.22665 0.98389 0.94702 0.91399 1.23056 0.94271 0.95485 0.89425 1.23711 0.98075 1.00862 0.94837 1.22367 0.92878 0.97830 0.87102 1.45665 1.19065 1.69368 0.99448 1.18938 1.05174 1.27953 0.82600 0.90150 1.24828 0.98755 0.99137 0.97726 1.69847 1.25898 1.35998 1.24807 0.86106 0.78369 0.78044 0.83260 1.21633 1.20539 1.21575 1.21952 0.90084 0.93701 0.89396 0.92781 0.92709 0.91068 0.76897 0.78356 0.83072 0.83530 0.81786 0.81813 0.78906 0.88930 0.94507 0.95150 0.93603 0.95159 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.47 37.16 0.35 -1.79 16 2 C 0.16 2.32 2.34 -67.93 -0.16 2.16 16 3 H 0.09 1.54 7.43 -51.93 -0.39 1.16 16 4 N -0.71 -8.79 4.95 -54.89 -0.27 -9.06 16 5 C 0.59 7.95 7.78 -12.52 -0.10 7.86 16 6 O -0.55 -9.27 16.56 5.28 0.09 -9.18 16 7 C -0.27 -2.94 6.13 -105.05 -0.64 -3.59 16 8 C 0.10 0.89 11.50 -16.95 -0.20 0.70 16 9 N -0.29 -3.01 11.85 30.87 0.37 -2.65 16 10 N -0.31 -3.05 3.77 -10.11 -0.04 -3.09 16 11 C 0.11 0.90 6.70 -83.45 -0.56 0.34 16 12 C -0.07 -0.51 9.77 -39.10 -0.38 -0.89 16 13 C -0.15 -0.73 10.11 -39.47 -0.40 -1.13 16 14 C 0.09 0.50 11.18 -17.53 -0.20 0.31 16 15 N -0.46 -3.69 10.35 -13.09 -0.14 -3.83 16 16 C 0.09 0.69 10.62 -17.34 -0.18 0.51 16 17 C 0.12 1.21 10.62 -16.43 -0.17 1.04 16 18 C -0.15 -2.67 3.52 -89.97 -0.32 -2.99 16 19 C 0.12 2.49 8.14 -8.52 -0.07 2.42 16 20 N -0.61 -15.59 3.76 -184.61 -0.69 -16.28 16 21 C -0.22 -6.17 10.73 -15.06 -0.16 -6.33 16 22 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.37 11.80 55.49 0.65 -26.72 16 25 Si 0.91 22.11 29.56 -169.99 -5.02 17.09 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 C 0.18 4.01 6.79 -8.38 -0.06 3.95 16 30 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.85 7.55 -40.82 -0.31 3.54 16 34 H 0.20 1.18 7.50 -52.48 -0.39 0.79 16 35 H 0.15 1.00 7.77 -52.49 -0.41 0.60 16 36 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 37 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.16 0.97 6.74 -52.49 -0.35 0.62 16 39 H 0.19 1.46 7.03 -52.49 -0.37 1.09 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.63 8.11 -51.92 -0.42 0.21 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 44 H 0.03 0.73 8.00 -51.93 -0.42 0.31 16 45 H 0.06 1.56 7.57 -51.93 -0.39 1.17 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -35.94 385.50 -8.54 -44.48 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.95 Total: 1.17 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.34 Total: 2.27 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.12 Total: -61.63 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.94 -8.54 -44.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969820908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.876 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds