Wall clock time and date at job start Wed Apr 1 2020 00:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21602 * 120.00193 * 359.97438 * 5 4 2 7 7 C 1.47420 * 119.99822 * 179.97438 * 5 4 2 8 8 C 1.41326 * 126.40650 * 359.68461 * 7 5 4 9 9 N 1.30478 * 108.06187 * 179.85543 * 8 7 5 10 10 N 1.39933 * 108.91663 * 0.40981 * 9 8 7 11 11 C 1.40173 * 125.77213 * 179.73318 * 10 9 8 12 12 C 1.39257 * 120.48568 * 0.02562 * 11 10 9 13 13 C 1.38512 * 118.36405 * 179.97438 * 12 11 10 14 14 C 1.38276 * 119.23129 * 0.02562 * 13 12 11 15 15 N 1.31859 * 120.91155 * 359.97438 * 14 13 12 16 16 C 1.31831 * 121.79218 * 359.73333 * 15 14 13 17 17 C 1.34536 * 108.45837 * 359.73676 * 10 9 8 18 18 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 19 19 C 1.53497 * 114.20590 * 174.71570 * 18 2 1 20 20 N 1.47063 * 87.98756 * 220.34354 * 19 18 2 21 21 C 1.36933 * 136.06152 * 207.08176 * 20 19 18 22 22 H 1.08001 * 119.99949 * 6.49131 * 21 20 19 23 23 C 1.38805 * 120.00422 * 186.49224 * 21 20 19 24 24 N 1.31621 * 119.99799 * 6.27156 * 23 21 20 25 25 Si 1.86798 * 120.00357 * 186.27268 * 23 21 20 26 26 H 1.48511 * 109.47134 * 265.01290 * 25 23 21 27 27 H 1.48498 * 109.47125 * 25.00956 * 25 23 21 28 28 H 1.48499 * 109.47537 * 145.01308 * 25 23 21 29 29 C 1.47070 * 87.88273 * 27.34326 * 20 19 18 30 30 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 31 31 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 32 32 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 33 33 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 34 34 H 1.08004 * 125.97189 * 0.02615 * 8 7 5 35 35 H 1.07997 * 120.82008 * 359.95233 * 12 11 10 36 36 H 1.07994 * 120.38534 * 180.02562 * 13 12 11 37 37 H 1.08002 * 119.54244 * 179.97438 * 14 13 12 38 38 H 1.07998 * 119.66226 * 180.28504 * 16 15 14 39 39 H 1.07991 * 126.30961 * 180.02562 * 17 10 9 40 40 H 1.08994 * 113.41243 * 307.91400 * 18 2 1 41 41 H 1.09000 * 113.46682 * 105.56058 * 19 18 2 42 42 H 1.09008 * 113.52408 * 335.13690 * 19 18 2 43 43 H 0.97005 * 119.99736 * 179.97438 * 24 23 21 44 44 H 1.09006 * 113.46411 * 87.43633 * 29 20 19 45 45 H 1.09003 * 113.46855 * 217.87664 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1616 2.4117 7 6 2.6381 -0.7135 3.5608 8 6 3.0048 -2.0753 3.6521 9 7 3.3886 -2.3097 4.8769 10 7 3.2789 -1.1293 5.6204 11 6 3.5939 -0.9841 6.9786 12 6 4.0635 -2.0689 7.7148 13 6 4.3618 -1.8760 9.0535 14 6 4.1846 -0.6230 9.6110 15 7 3.7380 0.3839 8.8863 16 6 3.4477 0.2445 7.6079 17 6 2.8198 -0.1574 4.8114 18 6 2.0399 -0.7212 -1.2494 19 6 3.5641 -0.6739 -1.4253 20 7 3.3395 -0.4640 -2.8634 21 6 4.0309 -0.7208 -4.0172 22 1 4.9487 -1.2889 -3.9816 23 6 3.5522 -0.2509 -5.2324 24 7 2.5037 0.5440 -5.2637 25 14 4.3961 -0.7468 -6.8234 26 1 5.3783 0.2982 -7.2094 27 1 5.1001 -2.0397 -6.6283 28 1 3.3812 -0.8930 -7.8975 29 6 2.0485 0.1492 -2.5168 30 1 -0.3634 -1.0240 0.0874 31 1 -0.3633 0.5876 0.8431 32 1 -0.3633 0.4362 -0.9304 33 1 2.2491 -1.6318 1.1524 34 1 2.9754 -2.7955 2.8478 35 1 4.1916 -3.0369 7.2533 36 1 4.7285 -2.6945 9.6550 37 1 4.4152 -0.4671 10.6546 38 1 3.0885 1.0937 7.0457 39 1 2.6292 0.8687 5.0889 40 1 1.6048 -1.7111 -1.3859 41 1 4.0570 -1.6187 -1.1962 42 1 4.0330 0.1767 -0.9304 43 1 2.1694 0.8726 -6.1130 44 1 2.1169 1.2171 -2.3095 45 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969820908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:20 Heat of formation + Delta-G solvation = 119.059695 kcal Electronic energy + Delta-G solvation = -27906.015613 eV Core-core repulsion = 23926.558836 eV Total energy + Delta-G solvation = -3979.456778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.88538 -41.13509 -40.67115 -39.52956 -36.15449 -35.27132 -34.16343 -33.39358 -32.23664 -31.29518 -30.31734 -29.34122 -26.50324 -25.88644 -25.38886 -25.05622 -23.72311 -22.47565 -22.02798 -21.24406 -20.68612 -19.60329 -18.74042 -18.10722 -17.58256 -17.20064 -16.97633 -16.79898 -16.72762 -16.06894 -15.84093 -15.68657 -15.39403 -15.06329 -14.85531 -14.80073 -14.57829 -14.28686 -14.07714 -13.87736 -13.40137 -13.19788 -13.19207 -13.02349 -12.98519 -12.67967 -12.44288 -12.30501 -12.03198 -11.92162 -11.82785 -11.54413 -11.05937 -10.87617 -10.84110 -10.83804 -10.69257 -10.37808 -9.99315 -9.38845 -8.92518 -7.92649 -5.24752 -0.54035 0.06387 0.71197 1.01203 1.12219 1.46280 1.47971 1.57551 2.24655 2.43325 2.47994 2.68621 3.18904 3.30812 3.31779 3.46295 3.54005 3.67383 3.71737 3.85270 3.93457 3.99164 4.06176 4.23826 4.30149 4.32872 4.46550 4.56547 4.59839 4.62839 4.82410 4.88530 4.89978 4.92094 5.00021 5.00496 5.15944 5.23692 5.26388 5.35458 5.38918 5.51763 5.60096 5.67622 5.79961 5.92280 6.29808 6.69377 6.77475 6.90616 7.34589 7.59745 8.61629 9.26574 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.001836 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.479406 B =15243.953397 C =15772.508252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.168 3.832 3 H 0.061 0.939 4 N -0.701 5.701 5 C 0.595 3.405 6 O -0.589 6.589 7 C -0.289 4.289 8 C 0.104 3.896 9 N -0.310 5.310 10 N -0.312 5.312 11 C 0.082 3.918 12 C -0.080 4.080 13 C -0.136 4.136 14 C 0.088 3.912 15 N -0.482 5.482 16 C 0.082 3.918 17 C 0.126 3.874 18 C -0.112 4.112 19 C 0.126 3.874 20 N -0.643 5.643 21 C -0.231 4.231 22 H 0.087 0.913 23 C -0.069 4.069 24 N -0.955 5.955 25 Si 0.981 3.019 26 H -0.289 1.289 27 H -0.264 1.264 28 H -0.293 1.293 29 C 0.169 3.831 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.230 0.770 35 H 0.153 0.847 36 H 0.181 0.819 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.208 0.792 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.249 0.751 44 H 0.010 0.990 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -8.519 31.081 32.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.062 3.938 3 H 0.080 0.920 4 N -0.351 5.351 5 C 0.383 3.617 6 O -0.470 6.470 7 C -0.303 4.303 8 C -0.084 4.084 9 N -0.127 5.127 10 N -0.085 5.085 11 C -0.012 4.012 12 C -0.107 4.107 13 C -0.156 4.156 14 C -0.069 4.069 15 N -0.191 5.191 16 C -0.078 4.078 17 C -0.022 4.022 18 C -0.131 4.131 19 C 0.001 3.999 20 N -0.368 5.368 21 C -0.359 4.359 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.808 3.192 26 H -0.217 1.217 27 H -0.189 1.189 28 H -0.219 1.219 29 C 0.043 3.957 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.251 0.749 34 H 0.246 0.754 35 H 0.171 0.829 36 H 0.198 0.802 37 H 0.211 0.789 38 H 0.190 0.810 39 H 0.224 0.776 40 H 0.131 0.869 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.478 -7.775 32.040 32.973 hybrid contribution 0.263 -0.126 -2.411 2.428 sum 0.741 -7.901 29.629 30.673 Atomic orbital electron populations 1.22049 0.94015 1.03012 1.01940 1.20658 0.94678 0.95820 0.82601 0.92040 1.45634 1.66595 1.14558 1.08342 1.17369 0.76303 0.85377 0.82602 1.90766 1.53268 1.17271 1.85717 1.20249 1.19570 0.95781 0.94683 1.24780 0.93360 0.95168 0.95095 1.77219 1.25663 1.04492 1.05362 1.45607 1.47938 1.07735 1.07195 1.18932 1.03974 0.97731 0.80555 1.21642 0.95739 0.98580 0.94738 1.22517 0.98919 1.00092 0.94059 1.23528 0.93527 0.88218 1.01638 1.67840 1.11218 1.34485 1.05510 1.22820 0.98440 0.94909 0.91626 1.23348 0.93292 0.96183 0.89339 1.23337 0.96261 1.00433 0.93102 1.22491 0.94876 0.98578 0.83975 1.46084 1.20113 1.69525 1.01108 1.19374 1.05283 1.27321 0.83934 0.89567 1.25703 0.99738 0.99648 1.01081 1.70034 1.27618 1.37569 1.25093 0.85035 0.77123 0.78136 0.78868 1.21667 1.18850 1.21919 1.21909 0.88637 0.93534 0.91628 0.90536 0.92932 0.91868 0.74925 0.75363 0.82930 0.80196 0.78874 0.81032 0.77555 0.86861 0.92099 0.95565 0.94217 0.97217 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.47 71.98 0.68 -3.27 16 2 C 0.17 4.86 2.34 44.99 0.11 4.96 16 3 H 0.06 2.17 7.43 -2.39 -0.02 2.15 16 4 N -0.70 -16.11 4.95 -445.81 -2.21 -18.32 16 5 C 0.60 15.51 7.78 86.66 0.67 16.18 16 6 O -0.59 -20.06 16.56 -4.04 -0.07 -20.13 16 7 C -0.29 -5.97 6.13 -20.14 -0.12 -6.09 16 8 C 0.10 1.72 11.50 85.65 0.99 2.71 16 9 N -0.31 -5.94 11.85 -56.23 -0.67 -6.60 16 10 N -0.31 -5.80 3.77 -185.91 -0.70 -6.50 16 11 C 0.08 1.31 6.70 38.19 0.26 1.57 16 12 C -0.08 -0.99 9.77 22.58 0.22 -0.77 16 13 C -0.14 -0.99 10.11 22.34 0.23 -0.76 16 14 C 0.09 0.80 11.18 84.70 0.95 1.74 16 15 N -0.48 -7.22 10.35 -195.34 -2.02 -9.24 16 16 C 0.08 1.22 10.62 84.83 0.90 2.12 16 17 C 0.13 2.39 10.62 84.24 0.89 3.28 16 18 C -0.11 -3.73 3.52 -10.37 -0.04 -3.77 16 19 C 0.13 4.89 8.14 83.17 0.68 5.57 16 20 N -0.64 -33.03 3.76 -737.98 -2.78 -35.81 16 21 C -0.23 -13.04 10.73 84.03 0.90 -12.13 16 22 H 0.09 4.61 7.84 -2.91 -0.02 4.59 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.95 -58.48 11.80 21.65 0.26 -58.23 16 25 Si 0.98 45.85 29.56 68.60 2.03 47.88 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 29 C 0.17 7.96 6.79 83.26 0.57 8.53 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.41 6.77 7.55 -92.71 -0.70 6.07 16 34 H 0.23 1.99 7.50 -2.91 -0.02 1.97 16 35 H 0.15 1.80 7.77 -2.91 -0.02 1.78 16 36 H 0.18 0.04 8.06 -2.91 -0.02 0.01 16 37 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 38 H 0.17 2.02 6.74 -2.91 -0.02 2.00 16 39 H 0.21 3.09 7.03 -2.92 -0.02 3.06 16 40 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.03 1.07 8.11 -2.38 -0.02 1.05 16 43 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 44 H 0.01 0.50 8.00 -2.38 -0.02 0.48 16 45 H 0.03 1.77 7.57 -2.39 -0.02 1.76 16 Total: -1.00 -80.04 385.50 2.51 -77.53 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.32 Total: 13.02 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 8.34 Total: 16.38 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -8.12 Total: -134.69 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.07 Total: -20.13 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -80.04 2.51 -77.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969820908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.594 kcal (2) G-P(sol) polarization free energy of solvation -80.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds