Wall clock time and date at job start Wed Apr 1 2020 00:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47092 * 2 1 4 4 N 1.46496 * 109.47002 * 239.99532 * 2 1 3 5 5 C 1.34783 * 119.99793 * 84.99857 * 4 2 1 6 6 O 1.21601 * 120.00170 * 0.02562 * 5 4 2 7 7 C 1.47417 * 120.00104 * 179.97438 * 5 4 2 8 8 C 1.41333 * 126.40701 * 0.02818 * 7 5 4 9 9 N 1.30479 * 108.06538 * 179.97438 * 8 7 5 10 10 N 1.39930 * 108.91508 * 359.97438 * 9 8 7 11 11 C 1.40168 * 125.77431 * 180.26618 * 10 9 8 12 12 C 1.39261 * 120.48338 * 359.69016 * 11 10 9 13 13 C 1.38508 * 118.36505 * 179.97438 * 12 11 10 14 14 C 1.38273 * 119.23389 * 359.97438 * 13 12 11 15 15 N 1.31867 * 120.90761 * 0.02562 * 14 13 12 16 16 C 1.31816 * 121.79229 * 359.72080 * 15 14 13 17 17 C 1.34542 * 108.46052 * 0.02562 * 10 9 8 18 18 C 1.53003 * 109.46794 * 119.99913 * 2 1 3 19 19 C 1.53944 * 113.74000 * 281.81725 * 18 2 1 20 20 N 1.47813 * 86.03660 * 222.08662 * 19 18 2 21 21 C 1.36936 * 134.45941 * 204.64588 * 20 19 18 22 22 H 1.07998 * 120.00510 * 179.86981 * 21 20 19 23 23 C 1.38818 * 119.99521 * 359.86834 * 21 20 19 24 24 N 1.31612 * 120.00077 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99639 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47099 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46982 * 120.00192 * 25 23 21 28 28 H 1.48501 * 109.47075 * 240.00005 * 25 23 21 29 29 C 1.47585 * 91.05157 * 24.55267 * 20 19 18 30 30 H 1.08992 * 109.47117 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46729 * 300.07413 * 1 2 3 32 32 H 1.09005 * 109.46974 * 60.07415 * 1 2 3 33 33 H 0.96995 * 120.00713 * 265.00127 * 4 2 1 34 34 H 1.08004 * 125.96660 * 359.97438 * 8 7 5 35 35 H 1.08005 * 120.81685 * 359.95991 * 12 11 10 36 36 H 1.08004 * 120.38368 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.54878 * 179.97438 * 14 13 12 38 38 H 1.08004 * 119.66408 * 180.26941 * 16 15 14 39 39 H 1.08000 * 126.31195 * 180.02562 * 17 10 9 40 40 H 1.08995 * 112.94371 * 53.41650 * 18 2 1 41 41 H 1.08997 * 113.76935 * 336.35524 * 19 18 2 42 42 H 1.08997 * 113.76470 * 107.74938 * 19 18 2 43 43 H 0.97002 * 119.99651 * 179.97438 * 24 23 21 44 44 H 1.08999 * 113.77182 * 221.15179 * 29 20 19 45 45 H 1.09000 * 113.87209 * 89.76574 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3572 6 8 1.8583 1.1616 -2.4117 7 6 2.6389 -0.7132 -3.5607 8 6 3.0121 -2.0734 -3.6503 9 7 3.3911 -2.3090 -4.8764 10 7 3.2802 -1.1290 -5.6202 11 6 3.5905 -0.9849 -6.9795 12 6 4.0616 -2.0693 -7.7154 13 6 4.3540 -1.8778 -9.0556 14 6 4.1697 -0.6268 -9.6150 15 7 3.7218 0.3798 -8.8904 16 6 3.4270 0.2392 -7.6134 17 6 2.8204 -0.1572 -4.8113 18 6 2.0400 -0.7213 1.2493 19 6 1.9745 0.1330 2.5283 20 7 3.3099 -0.4178 2.8417 21 6 4.0195 -0.6144 3.9962 22 1 5.0067 -1.0504 3.9558 23 6 3.4698 -0.2531 5.2187 24 7 2.2670 0.2788 5.2679 25 14 4.4381 -0.5205 6.7936 26 1 5.7540 -1.1273 6.4687 27 1 4.6488 0.7833 7.4725 28 1 3.6814 -1.4296 7.6915 29 6 3.5702 -0.6730 1.4116 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5150 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 2.2491 -1.6318 -1.1526 34 1 2.9877 -2.7923 -2.8447 35 1 4.1958 -3.0358 -7.2523 36 1 4.7209 -2.6964 -9.6571 37 1 4.3964 -0.4717 -10.6594 38 1 3.0583 1.0860 -7.0535 39 1 2.6280 0.8686 -5.0892 40 1 1.6176 -1.7192 1.3659 41 1 1.9752 1.2066 2.3400 42 1 1.1954 -0.1775 3.2245 43 1 1.8828 0.5309 6.1222 44 1 4.0628 -1.6258 1.2178 45 1 4.0409 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969820909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:24 Heat of formation + Delta-G solvation = 140.380012 kcal Electronic energy + Delta-G solvation = -27922.520302 eV Core-core repulsion = 23943.988043 eV Total energy + Delta-G solvation = -3978.532259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.18464 -40.49976 -39.44824 -37.90569 -34.80224 -34.59821 -32.90155 -32.17278 -31.09753 -30.51028 -29.50322 -27.45824 -25.25206 -24.61188 -24.51295 -23.95529 -22.70025 -21.56415 -20.92636 -20.14553 -19.36888 -18.64355 -17.52589 -16.94827 -16.74373 -16.26103 -16.06396 -15.94137 -15.36327 -14.81626 -14.71674 -14.56922 -14.26784 -14.00355 -13.91785 -13.74662 -13.56534 -13.21527 -13.08822 -12.73644 -12.28883 -12.04078 -11.63077 -11.55383 -11.37506 -11.27918 -11.19669 -10.88479 -10.65891 -10.34660 -10.31585 -10.24017 -10.05371 -9.79832 -9.66005 -9.63736 -9.40415 -8.90406 -8.78570 -8.65980 -6.85584 -5.75557 -3.07311 0.03387 0.54604 1.44796 1.67362 1.84506 3.17096 3.29138 3.39636 3.41402 3.44913 3.47478 3.76577 3.86563 4.03501 4.29954 4.31729 4.45510 4.46652 4.73089 4.78845 4.87222 5.00865 5.13054 5.18865 5.35946 5.40482 5.42632 5.45264 5.56938 5.68732 5.79091 5.85044 5.96462 6.03138 6.11116 6.31394 6.38742 6.43484 6.48054 6.61877 6.65742 6.83823 7.00572 7.24662 7.25856 7.38600 7.57985 7.68341 7.99860 8.36197 9.06352 9.72517 10.61914 11.41824 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.001839 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.668834 B =15221.408524 C =15736.051071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.592 3.408 6 O -0.548 6.548 7 C -0.270 4.270 8 C 0.096 3.904 9 N -0.292 5.292 10 N -0.314 5.314 11 C 0.107 3.893 12 C -0.072 4.072 13 C -0.147 4.147 14 C 0.088 3.912 15 N -0.456 5.456 16 C 0.089 3.911 17 C 0.124 3.876 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.200 0.800 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.194 0.806 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.040 0.960 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -5.830 -29.057 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.107 0.893 4 N -0.362 5.362 5 C 0.378 3.622 6 O -0.427 6.427 7 C -0.283 4.283 8 C -0.092 4.092 9 N -0.109 5.109 10 N -0.087 5.087 11 C 0.012 3.988 12 C -0.100 4.100 13 C -0.167 4.167 14 C -0.069 4.069 15 N -0.164 5.164 16 C -0.072 4.072 17 C -0.022 4.022 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.231 0.769 34 H 0.216 0.784 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.211 0.789 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.109 -5.027 -29.986 30.405 hybrid contribution 0.518 -0.772 1.957 2.166 sum 0.626 -5.798 -28.029 28.630 Atomic orbital electron populations 1.22114 0.95427 1.01794 1.02291 1.21124 0.93778 0.97489 0.82812 0.89349 1.45895 1.66879 1.13901 1.09477 1.17109 0.77181 0.85907 0.81997 1.90783 1.51407 1.15402 1.85064 1.20475 1.17541 0.94942 0.95388 1.24326 0.94704 0.95492 0.94727 1.77246 1.24907 1.03903 1.04859 1.45512 1.48508 1.07998 1.06687 1.18708 1.02335 0.96884 0.80840 1.21432 0.95883 0.98831 0.93829 1.22165 1.00383 0.99412 0.94758 1.22938 0.95048 0.88446 1.00477 1.67798 1.10182 1.33062 1.05374 1.22661 0.98353 0.94753 0.91390 1.23057 0.94232 0.95494 0.89466 1.23857 0.97555 1.00755 0.94527 1.22231 0.89598 0.93911 0.89303 1.45999 1.16364 1.71859 0.99659 1.19069 0.98436 1.34608 0.82832 0.90282 1.24778 0.97081 1.01188 0.97480 1.69815 1.15384 1.47397 1.24249 0.86064 0.78948 0.77342 0.83513 1.20509 1.21768 1.21713 1.22536 0.93084 0.97672 0.86779 0.92764 0.91088 0.92785 0.76920 0.78351 0.83069 0.83527 0.81786 0.81821 0.78910 0.89308 0.95384 0.90704 0.93693 0.94175 0.94985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.44 37.16 0.35 -1.81 16 2 C 0.15 2.27 2.29 -67.93 -0.16 2.12 16 3 H 0.09 1.54 7.48 -51.93 -0.39 1.15 16 4 N -0.71 -8.83 4.94 -54.88 -0.27 -9.10 16 5 C 0.59 7.97 7.78 -12.52 -0.10 7.87 16 6 O -0.55 -9.29 16.56 5.28 0.09 -9.20 16 7 C -0.27 -2.95 6.13 -105.05 -0.64 -3.59 16 8 C 0.10 0.89 11.50 -16.95 -0.19 0.70 16 9 N -0.29 -3.02 11.85 30.88 0.37 -2.65 16 10 N -0.31 -3.06 3.77 -10.11 -0.04 -3.09 16 11 C 0.11 0.90 6.70 -83.45 -0.56 0.34 16 12 C -0.07 -0.51 9.77 -39.10 -0.38 -0.89 16 13 C -0.15 -0.73 10.10 -39.47 -0.40 -1.13 16 14 C 0.09 0.50 11.18 -17.52 -0.20 0.31 16 15 N -0.46 -3.69 10.35 -13.10 -0.14 -3.83 16 16 C 0.09 0.69 10.62 -17.35 -0.18 0.51 16 17 C 0.12 1.21 10.62 -16.43 -0.17 1.04 16 18 C -0.15 -2.55 3.35 -89.69 -0.30 -2.85 16 19 C 0.18 4.01 6.98 -2.84 -0.02 4.00 16 20 N -0.61 -15.60 3.70 -177.69 -0.66 -16.26 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.28 11.39 55.49 0.63 -26.65 16 25 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 C 0.13 2.49 8.38 -2.96 -0.02 2.46 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 3.86 7.55 -40.82 -0.31 3.55 16 34 H 0.20 1.19 7.50 -52.48 -0.39 0.79 16 35 H 0.15 1.00 7.77 -52.48 -0.41 0.60 16 36 H 0.15 0.30 8.06 -52.48 -0.42 -0.12 16 37 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.16 0.97 6.74 -52.48 -0.35 0.61 16 39 H 0.19 1.46 7.04 -52.49 -0.37 1.09 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 42 H 0.07 1.89 7.17 -51.93 -0.37 1.51 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -35.82 384.76 -8.41 -44.23 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.93 Total: 1.25 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.24 Total: 2.33 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.10 Total: -61.57 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.82 -8.41 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969820909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.612 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds