Wall clock time and date at job start Wed Apr 1 2020 00:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.47092 * 2 1 4 4 N 1.46496 * 109.47002 * 239.99532 * 2 1 3 5 5 C 1.34783 * 119.99793 * 84.99857 * 4 2 1 6 6 O 1.21601 * 120.00170 * 0.02562 * 5 4 2 7 7 C 1.47417 * 120.00104 * 179.97438 * 5 4 2 8 8 C 1.41333 * 126.40701 * 0.02818 * 7 5 4 9 9 N 1.30479 * 108.06538 * 179.97438 * 8 7 5 10 10 N 1.39930 * 108.91508 * 359.97438 * 9 8 7 11 11 C 1.40168 * 125.77431 * 180.26618 * 10 9 8 12 12 C 1.39261 * 120.48338 * 359.69016 * 11 10 9 13 13 C 1.38508 * 118.36505 * 179.97438 * 12 11 10 14 14 C 1.38273 * 119.23389 * 359.97438 * 13 12 11 15 15 N 1.31867 * 120.90761 * 0.02562 * 14 13 12 16 16 C 1.31816 * 121.79229 * 359.72080 * 15 14 13 17 17 C 1.34542 * 108.46052 * 0.02562 * 10 9 8 18 18 C 1.53003 * 109.46794 * 119.99913 * 2 1 3 19 19 C 1.53944 * 113.74000 * 281.81725 * 18 2 1 20 20 N 1.47813 * 86.03660 * 222.08662 * 19 18 2 21 21 C 1.36936 * 134.45941 * 204.64588 * 20 19 18 22 22 H 1.07998 * 120.00510 * 179.86981 * 21 20 19 23 23 C 1.38818 * 119.99521 * 359.86834 * 21 20 19 24 24 N 1.31612 * 120.00077 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99639 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47099 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46982 * 120.00192 * 25 23 21 28 28 H 1.48501 * 109.47075 * 240.00005 * 25 23 21 29 29 C 1.47585 * 91.05157 * 24.55267 * 20 19 18 30 30 H 1.08992 * 109.47117 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46729 * 300.07413 * 1 2 3 32 32 H 1.09005 * 109.46974 * 60.07415 * 1 2 3 33 33 H 0.96995 * 120.00713 * 265.00127 * 4 2 1 34 34 H 1.08004 * 125.96660 * 359.97438 * 8 7 5 35 35 H 1.08005 * 120.81685 * 359.95991 * 12 11 10 36 36 H 1.08004 * 120.38368 * 180.02562 * 13 12 11 37 37 H 1.07995 * 119.54878 * 179.97438 * 14 13 12 38 38 H 1.08004 * 119.66408 * 180.26941 * 16 15 14 39 39 H 1.08000 * 126.31195 * 180.02562 * 17 10 9 40 40 H 1.08995 * 112.94371 * 53.41650 * 18 2 1 41 41 H 1.08997 * 113.76935 * 336.35524 * 19 18 2 42 42 H 1.08997 * 113.76470 * 107.74938 * 19 18 2 43 43 H 0.97002 * 119.99651 * 179.97438 * 24 23 21 44 44 H 1.08999 * 113.77182 * 221.15179 * 29 20 19 45 45 H 1.09000 * 113.87209 * 89.76574 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1470 -0.0184 -2.3572 6 8 1.8583 1.1616 -2.4117 7 6 2.6389 -0.7132 -3.5607 8 6 3.0121 -2.0734 -3.6503 9 7 3.3911 -2.3090 -4.8764 10 7 3.2802 -1.1290 -5.6202 11 6 3.5905 -0.9849 -6.9795 12 6 4.0616 -2.0693 -7.7154 13 6 4.3540 -1.8778 -9.0556 14 6 4.1697 -0.6268 -9.6150 15 7 3.7218 0.3798 -8.8904 16 6 3.4270 0.2392 -7.6134 17 6 2.8204 -0.1572 -4.8113 18 6 2.0400 -0.7213 1.2493 19 6 1.9745 0.1330 2.5283 20 7 3.3099 -0.4178 2.8417 21 6 4.0195 -0.6144 3.9962 22 1 5.0067 -1.0504 3.9558 23 6 3.4698 -0.2531 5.2187 24 7 2.2670 0.2788 5.2679 25 14 4.4381 -0.5205 6.7936 26 1 5.7540 -1.1273 6.4687 27 1 4.6488 0.7833 7.4725 28 1 3.6814 -1.4296 7.6915 29 6 3.5702 -0.6730 1.4116 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5150 0.8893 32 1 -0.3633 0.5127 -0.8907 33 1 2.2491 -1.6318 -1.1526 34 1 2.9877 -2.7923 -2.8447 35 1 4.1958 -3.0358 -7.2523 36 1 4.7209 -2.6964 -9.6571 37 1 4.3964 -0.4717 -10.6594 38 1 3.0583 1.0860 -7.0535 39 1 2.6280 0.8686 -5.0892 40 1 1.6176 -1.7192 1.3659 41 1 1.9752 1.2066 2.3400 42 1 1.1954 -0.1775 3.2245 43 1 1.8828 0.5309 6.1222 44 1 4.0628 -1.6258 1.2178 45 1 4.0409 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969820909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:23 Heat of formation + Delta-G solvation = 116.310862 kcal Electronic energy + Delta-G solvation = -27923.564019 eV Core-core repulsion = 23943.988043 eV Total energy + Delta-G solvation = -3979.575976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.88519 -41.12266 -40.60975 -39.40881 -36.12289 -35.27048 -34.10969 -33.39364 -32.21875 -31.29228 -30.31420 -29.27956 -26.62671 -25.89677 -25.34157 -25.05634 -23.70642 -22.46072 -22.01690 -21.22016 -20.61849 -19.58413 -18.75216 -18.10063 -17.58035 -17.23252 -16.97043 -16.79795 -16.72308 -16.06438 -15.82003 -15.67660 -15.37777 -15.05997 -14.85030 -14.78778 -14.56397 -14.28501 -14.03042 -13.87182 -13.35719 -13.23499 -13.19236 -13.03737 -12.93641 -12.67513 -12.43022 -12.28268 -11.96459 -11.91418 -11.77240 -11.52821 -11.18208 -10.90938 -10.85809 -10.83887 -10.69404 -10.37760 -9.98553 -9.38811 -8.89400 -7.89107 -5.22020 -0.54076 0.06416 0.71184 1.01197 1.12139 1.46153 1.47333 1.57360 2.25567 2.43322 2.48607 2.68626 3.19073 3.31734 3.31788 3.42643 3.53975 3.68129 3.75397 3.85778 3.93413 3.99953 4.04922 4.23787 4.30319 4.33523 4.48753 4.56606 4.61635 4.63889 4.82262 4.88509 4.90650 4.92030 5.00490 5.01183 5.16357 5.26296 5.28536 5.36549 5.38924 5.56952 5.60973 5.70366 5.79954 5.96609 6.29753 6.69403 6.77471 6.94281 7.34611 7.62795 8.58924 9.28147 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.001839 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.668834 B =15221.408524 C =15736.051071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.165 3.835 3 H 0.061 0.939 4 N -0.701 5.701 5 C 0.595 3.405 6 O -0.589 6.589 7 C -0.289 4.289 8 C 0.104 3.896 9 N -0.310 5.310 10 N -0.312 5.312 11 C 0.082 3.918 12 C -0.080 4.080 13 C -0.136 4.136 14 C 0.088 3.912 15 N -0.482 5.482 16 C 0.082 3.918 17 C 0.126 3.874 18 C -0.107 4.107 19 C 0.169 3.831 20 N -0.644 5.644 21 C -0.234 4.234 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.977 3.023 26 H -0.265 1.265 27 H -0.295 1.295 28 H -0.290 1.290 29 C 0.127 3.873 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.414 0.586 34 H 0.230 0.770 35 H 0.153 0.847 36 H 0.181 0.819 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.208 0.792 40 H 0.108 0.892 41 H 0.011 0.989 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.063 0.937 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -7.832 -31.187 32.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.059 3.941 3 H 0.080 0.920 4 N -0.351 5.351 5 C 0.383 3.617 6 O -0.470 6.470 7 C -0.303 4.303 8 C -0.084 4.084 9 N -0.127 5.127 10 N -0.085 5.085 11 C -0.012 4.012 12 C -0.107 4.107 13 C -0.156 4.156 14 C -0.069 4.069 15 N -0.190 5.190 16 C -0.078 4.078 17 C -0.022 4.022 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.101 0.899 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.806 3.194 26 H -0.190 1.190 27 H -0.223 1.223 28 H -0.217 1.217 29 C 0.002 3.998 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.171 0.829 36 H 0.198 0.802 37 H 0.211 0.789 38 H 0.190 0.810 39 H 0.225 0.775 40 H 0.126 0.874 41 H 0.029 0.971 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.059 -7.080 -32.170 32.957 hybrid contribution 0.287 -0.139 2.433 2.454 sum 1.346 -7.219 -29.738 30.631 Atomic orbital electron populations 1.22047 0.94133 1.03002 1.01828 1.20740 0.94632 0.95913 0.82774 0.92029 1.45642 1.66577 1.14550 1.08367 1.17369 0.76318 0.85379 0.82594 1.90765 1.53291 1.17263 1.85710 1.20251 1.19487 0.95843 0.94699 1.24780 0.93373 0.95172 0.95090 1.77219 1.25732 1.04485 1.05294 1.45607 1.47984 1.07729 1.07155 1.18933 1.03984 0.97790 0.80489 1.21643 0.95785 0.98532 0.94743 1.22516 0.98916 1.00120 0.94037 1.23527 0.93552 0.88207 1.01622 1.67838 1.11255 1.34352 1.05604 1.22817 0.98398 0.94957 0.91614 1.23351 0.93246 0.96192 0.89371 1.23448 0.95917 1.00426 0.92926 1.22145 0.88170 0.93741 0.91610 1.46439 1.17339 1.72078 1.01233 1.19472 0.98740 1.33785 0.84208 0.89908 1.25621 0.98176 1.01712 1.00655 1.70002 1.16914 1.48839 1.24501 0.85025 0.78156 0.76807 0.79425 1.18956 1.22269 1.21652 1.22686 0.94913 0.98497 0.83663 0.90682 0.91937 0.92907 0.74964 0.75385 0.82935 0.80196 0.78875 0.81029 0.77546 0.87402 0.97138 0.93516 0.94279 0.91844 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.44 71.99 0.68 -3.33 16 2 C 0.16 4.80 2.29 45.00 0.10 4.90 16 3 H 0.06 2.18 7.48 -2.39 -0.02 2.16 16 4 N -0.70 -16.19 4.94 -445.80 -2.20 -18.39 16 5 C 0.60 15.53 7.78 86.66 0.67 16.20 16 6 O -0.59 -20.07 16.56 -4.03 -0.07 -20.13 16 7 C -0.29 -5.98 6.13 -20.14 -0.12 -6.10 16 8 C 0.10 1.73 11.50 85.66 0.99 2.71 16 9 N -0.31 -5.94 11.85 -56.23 -0.67 -6.61 16 10 N -0.31 -5.80 3.77 -185.90 -0.70 -6.50 16 11 C 0.08 1.31 6.70 38.19 0.26 1.57 16 12 C -0.08 -0.99 9.77 22.58 0.22 -0.77 16 13 C -0.14 -0.99 10.10 22.34 0.23 -0.76 16 14 C 0.09 0.79 11.18 84.70 0.95 1.74 16 15 N -0.48 -7.21 10.35 -195.34 -2.02 -9.23 16 16 C 0.08 1.22 10.62 84.83 0.90 2.12 16 17 C 0.13 2.39 10.62 84.24 0.89 3.28 16 18 C -0.11 -3.62 3.35 -10.13 -0.03 -3.66 16 19 C 0.17 7.93 6.98 86.44 0.60 8.54 16 20 N -0.64 -32.96 3.70 -716.10 -2.65 -35.62 16 21 C -0.23 -13.18 10.70 84.04 0.90 -12.28 16 22 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.95 -57.92 11.39 21.65 0.25 -57.67 16 25 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 C 0.13 4.89 8.38 86.49 0.72 5.62 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.75 8.09 -2.39 -0.02 1.73 16 32 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.41 6.84 7.55 -92.71 -0.70 6.14 16 34 H 0.23 2.01 7.50 -2.91 -0.02 1.99 16 35 H 0.15 1.80 7.77 -2.91 -0.02 1.78 16 36 H 0.18 0.04 8.06 -2.91 -0.02 0.01 16 37 H 0.19 0.45 8.06 -2.91 -0.02 0.42 16 38 H 0.17 2.01 6.74 -2.91 -0.02 1.99 16 39 H 0.21 3.08 7.04 -2.91 -0.02 3.06 16 40 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.01 0.53 8.03 -2.39 -0.02 0.51 16 42 H 0.05 2.44 7.17 -2.39 -0.02 2.42 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.03 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -79.40 384.76 2.71 -76.69 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.32 Total: 13.10 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 8.42 Total: 16.30 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -8.00 Total: -134.02 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.13 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.40 2.71 -76.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969820909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.002 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds