Wall clock time and date at job start Wed Apr 1 2020 00:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47856 * 2 1 4 4 N 1.46500 * 109.47137 * 120.00223 * 2 1 3 5 5 C 1.34778 * 120.00385 * 274.99807 * 4 2 1 6 6 O 1.21576 * 119.99237 * 359.97438 * 5 4 2 7 7 C 1.47665 * 120.00448 * 179.97438 * 5 4 2 8 8 C 1.39700 * 120.07897 * 359.72781 * 7 5 4 9 9 C 1.37737 * 119.92222 * 179.69769 * 8 7 5 10 10 C 1.39037 * 120.07517 * 0.59754 * 9 8 7 11 11 N 1.39862 * 119.92165 * 179.69820 * 10 9 8 12 12 C 1.34806 * 126.84757 * 359.69004 * 11 10 9 13 13 N 1.30821 * 108.02558 * 179.83271 * 12 11 10 14 14 C 1.33293 * 109.84100 * 0.44294 * 13 12 11 15 15 N 1.30720 * 109.01416 * 359.72470 * 14 13 12 16 16 C 1.39048 * 120.15884 * 359.67394 * 10 9 8 17 17 C 1.37726 * 120.07998 * 0.02751 * 16 10 9 18 18 C 1.53008 * 109.47293 * 240.00232 * 2 1 3 19 19 C 1.53497 * 114.20384 * 59.99774 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08006 * 120.00205 * 7.81892 * 21 20 19 23 23 C 1.38809 * 120.00281 * 187.82655 * 21 20 19 24 24 N 1.31616 * 120.00068 * 195.17204 * 23 21 20 25 25 Si 1.86802 * 119.99918 * 15.16359 * 23 21 20 26 26 H 1.48504 * 109.47042 * 270.00682 * 25 23 21 27 27 H 1.48499 * 109.47021 * 30.00157 * 25 23 21 28 28 H 1.48492 * 109.47106 * 150.00508 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.08999 * 109.46751 * 59.99882 * 1 2 3 31 31 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46758 * 300.00111 * 1 2 3 33 33 H 0.97001 * 120.00124 * 94.99855 * 4 2 1 34 34 H 1.08008 * 120.03993 * 359.97390 * 8 7 5 35 35 H 1.08001 * 119.95786 * 180.31984 * 9 8 7 36 36 H 1.08007 * 125.98433 * 359.97438 * 12 11 10 37 37 H 1.08003 * 125.48825 * 179.70325 * 14 13 12 38 38 H 1.08008 * 119.95948 * 179.97438 * 16 10 9 39 39 H 1.07997 * 120.04195 * 179.97438 * 17 16 10 40 40 H 1.09008 * 113.41028 * 286.80480 * 18 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 43 43 H 0.96995 * 120.00585 * 354.89801 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8584 1.1613 2.4116 7 6 2.6388 -0.7147 3.5630 8 6 2.9656 -2.0716 3.5036 9 6 3.4298 -2.7164 4.6287 10 6 3.5616 -2.0213 5.8257 11 7 4.0273 -2.6808 6.9678 12 6 4.3798 -3.9783 7.0648 13 7 4.7630 -4.2027 8.2954 14 6 4.6611 -3.0836 9.0122 15 7 4.2152 -2.1247 8.2437 16 6 3.2319 -0.6720 5.8899 17 6 2.7729 -0.0194 4.7673 18 6 2.0400 -0.7212 -1.2493 19 6 1.5898 -0.0845 -2.5714 20 7 2.7723 0.7865 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3627 2.6593 -3.4140 23 6 4.4144 2.4898 -2.8189 24 7 4.6820 3.7691 -2.9738 25 14 5.7894 1.2895 -2.4210 26 1 5.9413 1.1815 -0.9477 27 1 5.4600 -0.0447 -2.9837 28 1 7.0598 1.7775 -3.0152 29 6 3.4340 -0.2722 -1.7172 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 2.8585 -2.6134 2.5754 35 1 3.6875 -3.7642 4.5822 36 1 4.3530 -4.7046 6.2659 37 1 4.9069 -2.9851 10.0592 38 1 3.3351 -0.1353 6.8215 39 1 2.5166 1.0285 4.8179 40 1 1.9118 -1.8029 -1.2077 41 1 0.6466 0.4561 -2.4938 42 1 1.6123 -0.7734 -3.4158 43 1 3.9826 4.3806 -3.2527 44 1 3.9432 -1.0112 -2.3359 45 1 4.0621 0.1088 -0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969884245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:41 Heat of formation + Delta-G solvation = 155.917541 kcal Electronic energy + Delta-G solvation = -28500.368365 eV Core-core repulsion = 24522.509864 eV Total energy + Delta-G solvation = -3977.858501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.81482 -40.50391 -39.29446 -38.28741 -34.94508 -34.62881 -32.46359 -32.15918 -31.53469 -30.80153 -29.55358 -27.83587 -25.62282 -25.01166 -23.92068 -23.72360 -22.43613 -21.70767 -21.35125 -20.44139 -19.34800 -18.90210 -17.71399 -17.30350 -16.58151 -16.34385 -16.11261 -15.63616 -15.19758 -14.92032 -14.79993 -14.68366 -14.51814 -14.04896 -13.93225 -13.59894 -13.39952 -13.25748 -13.16966 -12.96446 -12.71798 -12.31258 -12.02175 -11.56086 -11.49590 -11.27965 -11.21582 -10.97181 -10.68689 -10.63828 -10.40412 -10.34310 -10.11615 -9.86513 -9.60249 -9.49395 -9.18680 -9.02873 -8.81056 -8.67395 -7.16743 -6.27905 -3.20072 -0.02751 0.79984 1.32938 1.65190 2.38946 2.70514 3.09821 3.40936 3.46774 3.52601 3.61824 3.72029 3.85889 4.19699 4.33236 4.42139 4.53043 4.60825 4.74821 4.76184 4.90154 4.96105 5.01295 5.06460 5.41412 5.43657 5.51768 5.56660 5.57874 5.66441 5.79274 5.81093 5.84468 5.90061 5.92782 6.05295 6.12193 6.18337 6.24900 6.33060 6.41002 6.45522 6.49074 6.60418 6.88927 7.14239 7.46447 7.52844 8.23118 8.26521 8.99759 9.53403 10.38966 11.22100 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.002400 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.835864 B =11665.478337 C =12227.927485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.106 0.894 4 N -0.716 5.716 5 C 0.554 3.446 6 O -0.526 6.526 7 C -0.128 4.128 8 C -0.060 4.060 9 C -0.140 4.140 10 C 0.166 3.834 11 N -0.331 5.331 12 C 0.263 3.737 13 N -0.537 5.537 14 C 0.207 3.793 15 N -0.312 5.312 16 C -0.118 4.118 17 C -0.036 4.036 18 C -0.141 4.141 19 C 0.126 3.874 20 N -0.622 5.622 21 C -0.304 4.304 22 H 0.081 0.919 23 C -0.023 4.023 24 N -0.932 5.932 25 Si 1.062 2.938 26 H -0.294 1.294 27 H -0.283 1.283 28 H -0.296 1.296 29 C 0.105 3.895 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.395 0.605 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.225 0.775 37 H 0.224 0.776 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -19.649 18.903 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.124 0.876 4 N -0.367 5.367 5 C 0.340 3.660 6 O -0.403 6.403 7 C -0.131 4.131 8 C -0.080 4.080 9 C -0.161 4.161 10 C 0.072 3.928 11 N -0.115 5.115 12 C -0.032 4.032 13 N -0.263 5.263 14 C -0.095 4.095 15 N -0.137 5.137 16 C -0.138 4.138 17 C -0.056 4.056 18 C -0.161 4.161 19 C -0.001 4.001 20 N -0.350 5.350 21 C -0.431 4.431 22 H 0.099 0.901 23 C -0.223 4.223 24 N -0.574 5.574 25 Si 0.893 3.107 26 H -0.222 1.222 27 H -0.209 1.209 28 H -0.223 1.223 29 C -0.021 4.021 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.229 0.771 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.241 0.759 37 H 0.240 0.760 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.472 -18.199 19.545 26.931 hybrid contribution -1.381 -0.601 -0.727 1.673 sum -4.853 -18.800 18.818 27.039 Atomic orbital electron populations 1.22109 0.95310 1.01445 1.02636 1.20695 0.93454 0.98287 0.81299 0.87643 1.46016 1.67064 1.13738 1.09840 1.18081 0.78226 0.86633 0.83018 1.90835 1.49519 1.15151 1.84761 1.20211 1.03689 0.94280 0.94966 1.21150 0.95450 0.93305 0.98053 1.20690 1.04001 1.00642 0.90749 1.17738 0.98843 0.92683 0.83492 1.47731 1.47481 1.08436 1.07827 1.26285 0.94086 0.85897 0.96902 1.70656 1.24351 1.28676 1.02587 1.26233 0.96385 0.85614 1.01269 1.78171 1.24243 1.22586 0.88655 1.20923 1.00528 0.92099 1.00239 1.21267 0.93337 1.00999 0.89984 1.23195 0.99638 0.98096 0.95211 1.22392 0.93067 0.91950 0.92654 1.46257 1.13194 1.12736 1.62856 1.20110 0.96317 0.87428 1.39199 0.90085 1.25736 0.97357 0.99265 0.99915 1.70884 1.36885 1.01367 1.48232 0.83784 0.76077 0.74768 0.76035 1.22203 1.20898 1.22332 1.22727 0.93858 0.91118 0.94382 0.91066 0.92926 0.92469 0.77062 0.84119 0.84366 0.75912 0.75953 0.83730 0.83277 0.90519 0.93195 0.94445 0.92825 0.93700 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.29 37.16 0.35 -1.77 16 2 C 0.17 2.58 2.43 -67.93 -0.16 2.42 16 3 H 0.11 2.20 7.36 -51.93 -0.38 1.82 16 4 N -0.72 -9.01 5.03 -54.80 -0.28 -9.29 16 5 C 0.55 7.92 7.73 -12.41 -0.10 7.83 16 6 O -0.53 -9.87 16.00 5.30 0.08 -9.79 16 7 C -0.13 -1.38 5.87 -104.95 -0.62 -2.00 16 8 C -0.06 -0.45 9.53 -39.22 -0.37 -0.82 16 9 C -0.14 -0.90 9.45 -39.47 -0.37 -1.28 16 10 C 0.17 1.44 6.70 -83.60 -0.56 0.88 16 11 N -0.33 -2.96 3.81 -11.77 -0.04 -3.01 16 12 C 0.26 1.87 11.97 -90.32 -1.08 0.79 16 13 N -0.54 -4.74 11.19 -15.73 -0.18 -4.92 16 14 C 0.21 1.70 13.03 -91.76 -1.20 0.50 16 15 N -0.31 -3.12 12.03 29.30 0.35 -2.77 16 16 C -0.12 -1.13 9.66 -39.47 -0.38 -1.51 16 17 C -0.04 -0.39 9.58 -39.22 -0.38 -0.76 16 18 C -0.14 -2.18 3.73 -89.97 -0.34 -2.51 16 19 C 0.13 2.32 8.08 -8.50 -0.07 2.25 16 20 N -0.62 -14.87 3.42 -184.59 -0.63 -15.51 16 21 C -0.30 -8.74 11.03 -15.06 -0.17 -8.91 16 22 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 23 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 24 N -0.93 -29.83 13.70 55.49 0.76 -29.07 16 25 Si 1.06 26.85 25.50 -169.99 -4.34 22.52 16 26 H -0.29 -7.25 6.97 56.52 0.39 -6.86 16 27 H -0.28 -6.51 5.66 56.52 0.32 -6.19 16 28 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 29 C 0.10 2.10 5.15 -8.37 -0.04 2.06 16 30 H 0.07 0.99 6.50 -51.93 -0.34 0.65 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.39 3.47 6.63 -40.82 -0.27 3.20 16 34 H 0.14 0.66 6.40 -52.48 -0.34 0.32 16 35 H 0.14 0.41 6.79 -52.49 -0.36 0.05 16 36 H 0.22 0.55 7.08 -52.48 -0.37 0.18 16 37 H 0.22 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.14 1.35 7.72 -52.48 -0.41 0.95 16 39 H 0.15 1.64 7.64 -52.49 -0.40 1.24 16 40 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.05 0.89 6.43 -51.93 -0.33 0.56 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 8.27 8.73 -40.82 -0.36 7.92 16 44 H 0.05 0.87 7.02 -51.93 -0.36 0.51 16 45 H 0.05 1.10 6.21 -51.93 -0.32 0.78 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -38.22 372.34 -9.90 -48.12 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.66 Total: 1.74 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -5.58 Total: -3.64 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.02 Total: -64.56 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -4.34 Total: 22.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.22 -9.90 -48.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969884245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.036 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds