Wall clock time and date at job start Wed Apr 1 2020 00:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47856 * 2 1 4 4 N 1.46500 * 109.47137 * 120.00223 * 2 1 3 5 5 C 1.34778 * 120.00385 * 274.99807 * 4 2 1 6 6 O 1.21576 * 119.99237 * 359.97438 * 5 4 2 7 7 C 1.47665 * 120.00448 * 179.97438 * 5 4 2 8 8 C 1.39700 * 120.07897 * 359.72781 * 7 5 4 9 9 C 1.37737 * 119.92222 * 179.69769 * 8 7 5 10 10 C 1.39037 * 120.07517 * 0.59754 * 9 8 7 11 11 N 1.39862 * 119.92165 * 179.69820 * 10 9 8 12 12 C 1.34806 * 126.84757 * 359.69004 * 11 10 9 13 13 N 1.30821 * 108.02558 * 179.83271 * 12 11 10 14 14 C 1.33293 * 109.84100 * 0.44294 * 13 12 11 15 15 N 1.30720 * 109.01416 * 359.72470 * 14 13 12 16 16 C 1.39048 * 120.15884 * 359.67394 * 10 9 8 17 17 C 1.37726 * 120.07998 * 0.02751 * 16 10 9 18 18 C 1.53008 * 109.47293 * 240.00232 * 2 1 3 19 19 C 1.53497 * 114.20384 * 59.99774 * 18 2 1 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 2 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08006 * 120.00205 * 7.81892 * 21 20 19 23 23 C 1.38809 * 120.00281 * 187.82655 * 21 20 19 24 24 N 1.31616 * 120.00068 * 195.17204 * 23 21 20 25 25 Si 1.86802 * 119.99918 * 15.16359 * 23 21 20 26 26 H 1.48504 * 109.47042 * 270.00682 * 25 23 21 27 27 H 1.48499 * 109.47021 * 30.00157 * 25 23 21 28 28 H 1.48492 * 109.47106 * 150.00508 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.08999 * 109.46751 * 59.99882 * 1 2 3 31 31 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46758 * 300.00111 * 1 2 3 33 33 H 0.97001 * 120.00124 * 94.99855 * 4 2 1 34 34 H 1.08008 * 120.03993 * 359.97390 * 8 7 5 35 35 H 1.08001 * 119.95786 * 180.31984 * 9 8 7 36 36 H 1.08007 * 125.98433 * 359.97438 * 12 11 10 37 37 H 1.08003 * 125.48825 * 179.70325 * 14 13 12 38 38 H 1.08008 * 119.95948 * 179.97438 * 16 10 9 39 39 H 1.07997 * 120.04195 * 179.97438 * 17 16 10 40 40 H 1.09008 * 113.41028 * 286.80480 * 18 2 1 41 41 H 1.08996 * 113.46841 * 332.74047 * 19 18 2 42 42 H 1.08998 * 113.51535 * 202.31022 * 19 18 2 43 43 H 0.96995 * 120.00585 * 354.89801 * 24 23 21 44 44 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 45 45 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8584 1.1613 2.4116 7 6 2.6388 -0.7147 3.5630 8 6 2.9656 -2.0716 3.5036 9 6 3.4298 -2.7164 4.6287 10 6 3.5616 -2.0213 5.8257 11 7 4.0273 -2.6808 6.9678 12 6 4.3798 -3.9783 7.0648 13 7 4.7630 -4.2027 8.2954 14 6 4.6611 -3.0836 9.0122 15 7 4.2152 -2.1247 8.2437 16 6 3.2319 -0.6720 5.8899 17 6 2.7729 -0.0194 4.7673 18 6 2.0400 -0.7212 -1.2493 19 6 1.5898 -0.0845 -2.5714 20 7 2.7723 0.7865 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3627 2.6593 -3.4140 23 6 4.4144 2.4898 -2.8189 24 7 4.6820 3.7691 -2.9738 25 14 5.7894 1.2895 -2.4210 26 1 5.9413 1.1815 -0.9477 27 1 5.4600 -0.0447 -2.9837 28 1 7.0598 1.7775 -3.0152 29 6 3.4340 -0.2722 -1.7172 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 2.8585 -2.6134 2.5754 35 1 3.6875 -3.7642 4.5822 36 1 4.3530 -4.7046 6.2659 37 1 4.9069 -2.9851 10.0592 38 1 3.3351 -0.1353 6.8215 39 1 2.5166 1.0285 4.8179 40 1 1.9118 -1.8029 -1.2077 41 1 0.6466 0.4561 -2.4938 42 1 1.6123 -0.7734 -3.4158 43 1 3.9826 4.3806 -3.2527 44 1 3.9432 -1.0112 -2.3359 45 1 4.0621 0.1088 -0.9118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969884245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:40 Heat of formation + Delta-G solvation = 129.535453 kcal Electronic energy + Delta-G solvation = -28501.512378 eV Core-core repulsion = 24522.509864 eV Total energy + Delta-G solvation = -3979.002515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.38795 -41.52382 -40.46908 -39.40732 -36.26498 -35.31928 -34.51357 -32.82010 -32.44130 -31.67021 -30.44868 -29.57192 -26.99636 -25.98247 -25.14263 -24.49724 -23.53627 -22.75778 -22.16257 -21.47303 -20.72729 -19.66898 -19.41103 -18.55400 -17.70591 -16.94689 -16.93417 -16.73638 -16.54933 -16.02939 -15.83697 -15.64263 -15.45265 -15.24969 -15.19853 -14.89942 -14.57841 -14.47411 -14.06251 -13.83562 -13.64226 -13.34493 -13.29935 -13.13720 -12.77314 -12.58737 -12.41395 -12.18570 -11.93775 -11.88050 -11.66991 -11.37105 -11.25391 -11.13748 -11.02070 -10.93968 -10.82479 -10.23274 -10.17084 -9.51875 -9.18946 -8.60732 -5.42895 -0.70511 0.17877 0.69486 1.09707 1.35479 1.48467 1.63220 1.76231 1.88999 2.05787 2.55449 2.72036 3.10545 3.18652 3.26880 3.34816 3.44439 3.65633 3.68322 3.80689 3.85444 3.93413 4.12358 4.32076 4.36338 4.41586 4.44873 4.59188 4.65849 4.71671 4.76097 4.81686 4.82704 4.89467 4.91603 4.93770 5.09873 5.17748 5.23650 5.26239 5.30524 5.31877 5.39246 5.48862 5.61679 5.90687 5.98117 6.55502 6.72468 6.90369 7.23324 7.37740 8.32338 8.91172 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.002400 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.835864 B =11665.478337 C =12227.927485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.168 3.832 3 H 0.040 0.960 4 N -0.698 5.698 5 C 0.550 3.450 6 O -0.587 6.587 7 C -0.148 4.148 8 C -0.043 4.043 9 C -0.123 4.123 10 C 0.165 3.835 11 N -0.343 5.343 12 C 0.274 3.726 13 N -0.562 5.562 14 C 0.208 3.792 15 N -0.353 5.353 16 C -0.130 4.130 17 C -0.051 4.051 18 C -0.105 4.105 19 C 0.121 3.879 20 N -0.661 5.661 21 C -0.283 4.283 22 H 0.044 0.956 23 C -0.094 4.094 24 N -0.975 5.975 25 Si 1.104 2.896 26 H -0.289 1.289 27 H -0.239 1.239 28 H -0.306 1.306 29 C 0.095 3.905 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.419 0.581 34 H 0.180 0.820 35 H 0.188 0.812 36 H 0.272 0.728 37 H 0.250 0.750 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.244 0.756 44 H 0.070 0.930 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -26.340 19.285 33.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.064 3.936 3 H 0.058 0.942 4 N -0.350 5.350 5 C 0.339 3.661 6 O -0.468 6.468 7 C -0.151 4.151 8 C -0.062 4.062 9 C -0.143 4.143 10 C 0.072 3.928 11 N -0.127 5.127 12 C -0.020 4.020 13 N -0.288 5.288 14 C -0.093 4.093 15 N -0.178 5.178 16 C -0.150 4.150 17 C -0.071 4.071 18 C -0.124 4.124 19 C -0.004 4.004 20 N -0.390 5.390 21 C -0.411 4.411 22 H 0.062 0.938 23 C -0.285 4.285 24 N -0.621 5.621 25 Si 0.929 3.071 26 H -0.217 1.217 27 H -0.163 1.163 28 H -0.234 1.234 29 C -0.030 4.030 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.258 0.742 34 H 0.197 0.803 35 H 0.206 0.794 36 H 0.287 0.713 37 H 0.266 0.734 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.468 -24.997 19.930 32.157 hybrid contribution -1.523 1.426 -0.757 2.220 sum -4.991 -23.570 19.173 30.791 Atomic orbital electron populations 1.22021 0.93542 1.03645 1.01421 1.20411 0.94776 0.95539 0.82910 0.94156 1.45734 1.66334 1.14642 1.08316 1.18661 0.77178 0.86056 0.84237 1.90810 1.52249 1.18021 1.85755 1.19993 1.06048 0.96022 0.93080 1.21518 0.93334 0.91372 0.99934 1.21173 1.01747 1.02552 0.88813 1.17984 0.98106 0.92277 0.84475 1.47791 1.48257 1.09174 1.07503 1.27264 0.91684 0.85607 0.97429 1.70701 1.25500 1.29003 1.03621 1.26839 0.95046 0.85163 1.02301 1.78147 1.25840 1.24070 0.89704 1.20803 1.01558 0.93217 0.99445 1.21117 0.94604 1.00395 0.90961 1.23004 0.95266 1.01265 0.92893 1.22702 0.91007 0.91389 0.95301 1.46326 1.16377 1.12725 1.63571 1.19929 0.95145 0.89773 1.36298 0.93845 1.27137 1.00490 0.99882 1.00979 1.71005 1.36491 1.02635 1.52003 0.83320 0.72761 0.74748 0.76235 1.21659 1.16280 1.23420 1.23035 0.96183 0.90071 0.93692 0.92000 0.88809 0.94149 0.74179 0.80252 0.79444 0.71275 0.73441 0.84705 0.85512 0.83946 0.93406 0.91550 0.94728 0.91221 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 71.98 0.67 -3.02 16 2 C 0.17 4.94 2.43 44.99 0.11 5.05 16 3 H 0.04 1.74 7.36 -2.39 -0.02 1.73 16 4 N -0.70 -15.59 5.03 -445.57 -2.24 -17.83 16 5 C 0.55 15.61 7.73 86.73 0.67 16.28 16 6 O -0.59 -23.62 16.00 -3.96 -0.06 -23.68 16 7 C -0.15 -3.02 5.87 -20.08 -0.12 -3.14 16 8 C -0.04 -0.43 9.53 22.50 0.21 -0.22 16 9 C -0.12 -0.94 9.45 22.34 0.21 -0.73 16 10 C 0.16 2.45 6.70 38.25 0.26 2.70 16 11 N -0.34 -5.27 3.81 -191.16 -0.73 -6.00 16 12 C 0.27 2.78 11.97 180.24 2.16 4.94 16 13 N -0.56 -8.38 11.19 -203.68 -2.28 -10.66 16 14 C 0.21 3.09 13.03 180.75 2.35 5.44 16 15 N -0.35 -6.74 12.03 -61.21 -0.74 -7.48 16 16 C -0.13 -2.53 9.66 22.34 0.22 -2.31 16 17 C -0.05 -1.14 9.58 22.50 0.22 -0.93 16 18 C -0.11 -2.74 3.73 -10.37 -0.04 -2.78 16 19 C 0.12 4.06 8.08 83.18 0.67 4.73 16 20 N -0.66 -31.00 3.42 -737.93 -2.53 -33.53 16 21 C -0.28 -16.85 11.03 84.03 0.93 -15.93 16 22 H 0.04 2.82 8.06 -2.91 -0.02 2.79 16 23 C -0.09 -5.82 5.50 84.86 0.47 -5.35 16 24 N -0.98 -65.97 13.70 21.65 0.30 -65.67 16 25 Si 1.10 54.46 25.50 68.60 1.75 56.21 16 26 H -0.29 -13.84 6.97 99.48 0.69 -13.15 16 27 H -0.24 -9.93 5.66 99.48 0.56 -9.37 16 28 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 29 C 0.09 3.45 5.15 83.26 0.43 3.88 16 30 H 0.06 1.65 6.50 -2.39 -0.02 1.63 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.42 4.95 6.63 -92.71 -0.61 4.34 16 34 H 0.18 0.35 6.40 -2.91 -0.02 0.34 16 35 H 0.19 -0.41 6.79 -2.91 -0.02 -0.43 16 36 H 0.27 -0.43 7.08 -2.91 -0.02 -0.45 16 37 H 0.25 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.14 2.76 7.72 -2.91 -0.02 2.74 16 39 H 0.13 3.26 7.64 -2.91 -0.02 3.24 16 40 H 0.14 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.05 1.62 6.43 -2.39 -0.02 1.60 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.24 16.60 8.73 -92.71 -0.81 15.79 16 44 H 0.07 2.27 7.02 -2.38 -0.02 2.25 16 45 H 0.03 1.31 6.21 -2.39 -0.01 1.30 16 Total: -1.00 -95.12 372.34 3.11 -92.00 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.23 Total: 8.01 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 9.41 Total: 8.63 kcal Atomic # 7 Polarization: -132.96 SS G_CDS: -8.21 Total: -141.18 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 54.46 SS G_CDS: 1.75 Total: 56.21 kcal Total: -95.12 3.11 -92.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969884245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.540 kcal (2) G-P(sol) polarization free energy of solvation -95.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds