Wall clock time and date at job start Wed Apr 1 2020 00:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21569 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.47674 * 119.99692 * 179.97438 * 5 4 2 8 8 C 1.39707 * 120.07886 * 359.72147 * 7 5 4 9 9 C 1.37726 * 119.91790 * 179.76286 * 8 7 5 10 10 C 1.39050 * 120.08170 * 0.49333 * 9 8 7 11 11 N 1.39866 * 119.92113 * 179.74063 * 10 9 8 12 12 C 1.34804 * 126.84836 * 359.73626 * 11 10 9 13 13 N 1.30819 * 108.02099 * 179.89127 * 12 11 10 14 14 C 1.33293 * 109.84588 * 0.37655 * 13 12 11 15 15 N 1.30726 * 109.01354 * 359.76534 * 14 13 12 16 16 C 1.39045 * 120.15700 * 359.76145 * 10 9 8 17 17 C 1.37734 * 120.07778 * 0.02562 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.07999 * 120.03910 * 0.02562 * 8 7 5 35 35 H 1.08004 * 119.95915 * 180.25584 * 9 8 7 36 36 H 1.08001 * 125.98609 * 0.02562 * 12 11 10 37 37 H 1.08003 * 125.49387 * 179.76059 * 14 13 12 38 38 H 1.07997 * 119.96341 * 179.97438 * 16 10 9 39 39 H 1.07995 * 120.03934 * 179.97438 * 17 16 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 45 45 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4119 7 6 2.6398 -0.7146 -3.5627 8 6 2.9784 -2.0686 -3.5001 9 6 3.4329 -2.7157 -4.6277 10 6 3.5647 -2.0207 -5.8248 11 7 4.0318 -2.6799 -6.9665 12 6 4.3958 -3.9745 -7.0604 13 7 4.7703 -4.2012 -8.2932 14 6 4.6684 -3.0821 -9.0102 15 7 4.2208 -2.1236 -8.2422 16 6 3.2337 -0.6718 -5.8894 17 6 2.7744 -0.0192 -4.7669 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -4.2157 -0.4976 2.7570 27 1 -4.3342 -2.9151 2.9011 28 1 -3.5585 -1.6236 4.8017 29 6 1.1558 -1.8880 1.7197 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 2.8798 -2.6081 -2.5698 35 1 3.6909 -3.7635 -4.5811 36 1 4.3789 -4.6982 -6.2590 37 1 4.9158 -2.9832 -10.0568 38 1 3.3377 -0.1349 -6.8207 39 1 2.5178 1.0286 -4.8177 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969884248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:44 Heat of formation + Delta-G solvation = 159.403487 kcal Electronic energy + Delta-G solvation = -28494.093999 eV Core-core repulsion = 24516.386659 eV Total energy + Delta-G solvation = -3977.707339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.76521 -40.40547 -39.19964 -38.16934 -34.61267 -34.51687 -32.28118 -32.09156 -31.37014 -30.49756 -29.07459 -27.70175 -25.18917 -24.74510 -24.08925 -23.80775 -22.50392 -21.66397 -21.33514 -20.22651 -19.13415 -18.69862 -17.41019 -16.81422 -16.29489 -16.28111 -15.92720 -15.31537 -15.01118 -14.82865 -14.73335 -14.64681 -14.59923 -14.00077 -13.84139 -13.67902 -13.28126 -12.96273 -12.68509 -12.64512 -12.33241 -11.82304 -11.48844 -11.28455 -11.14890 -11.09546 -10.99779 -10.79121 -10.62210 -10.59238 -10.37234 -10.35707 -9.97072 -9.83440 -9.72238 -9.53497 -9.21890 -8.89360 -8.77886 -8.64004 -6.86837 -5.81400 -3.12553 0.03538 0.87125 1.38417 1.70384 2.43446 2.78038 3.26523 3.37305 3.42211 3.42472 3.60560 3.77641 3.91623 4.26577 4.41055 4.42862 4.50144 4.64433 4.84076 5.00869 5.07745 5.24033 5.26553 5.33830 5.48909 5.52310 5.57096 5.66147 5.85999 5.89458 5.90807 5.97523 6.07104 6.17101 6.28049 6.38658 6.44512 6.52023 6.59030 6.66438 6.74917 7.00147 7.18039 7.22000 7.45596 7.51129 7.57125 7.71927 7.93305 8.34062 9.00061 9.66745 10.60028 11.35805 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002150 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.789922 B =13022.637270 C =13559.487105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.078 0.922 4 N -0.710 5.710 5 C 0.554 3.446 6 O -0.539 6.539 7 C -0.127 4.127 8 C -0.059 4.059 9 C -0.139 4.139 10 C 0.164 3.836 11 N -0.330 5.330 12 C 0.264 3.736 13 N -0.538 5.538 14 C 0.206 3.794 15 N -0.313 5.313 16 C -0.119 4.119 17 C -0.038 4.038 18 C -0.162 4.162 19 C 0.127 3.873 20 N -0.604 5.604 21 C -0.214 4.214 22 H 0.079 0.921 23 C -0.004 4.004 24 N -0.919 5.919 25 Si 0.908 3.092 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.157 3.843 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.397 0.603 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.225 0.775 37 H 0.224 0.776 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.800 -1.446 -16.479 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 H 0.096 0.904 4 N -0.360 5.360 5 C 0.341 3.659 6 O -0.417 6.417 7 C -0.131 4.131 8 C -0.078 4.078 9 C -0.160 4.160 10 C 0.071 3.929 11 N -0.114 5.114 12 C -0.031 4.031 13 N -0.263 5.263 14 C -0.096 4.096 15 N -0.138 5.138 16 C -0.139 4.139 17 C -0.058 4.058 18 C -0.182 4.182 19 C 0.000 4.000 20 N -0.330 5.330 21 C -0.341 4.341 22 H 0.097 0.903 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.738 3.262 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.032 3.968 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.232 0.768 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.241 0.759 37 H 0.240 0.760 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.202 -0.290 -16.830 21.392 hybrid contribution -0.809 -0.809 0.703 1.343 sum 12.393 -1.098 -16.127 20.368 Atomic orbital electron populations 1.22173 0.92866 1.04398 1.01150 1.20621 0.95757 0.95194 0.81181 0.90406 1.46109 1.66009 1.13988 1.09886 1.18056 0.78244 0.86619 0.83022 1.90777 1.50556 1.15541 1.84851 1.20249 1.03376 0.94376 0.95104 1.21214 0.94999 0.93322 0.98264 1.20716 1.03959 1.00614 0.90677 1.17743 0.99013 0.92671 0.83475 1.47730 1.47239 1.08629 1.07816 1.26301 0.93956 0.85942 0.96900 1.70655 1.24650 1.28560 1.02451 1.26222 0.96472 0.85619 1.01262 1.78157 1.24238 1.22605 0.88786 1.20897 1.00772 0.92135 1.00137 1.21232 0.93590 1.00922 0.90053 1.23384 0.98366 1.01641 0.94816 1.22339 0.88977 0.95777 0.92947 1.45650 1.04235 1.20021 1.63078 1.18819 0.83166 1.03672 1.28417 0.90318 1.24713 0.98081 0.96504 1.00814 1.69779 1.34174 1.09493 1.43154 0.86262 0.84497 0.76950 0.78448 1.21061 1.21638 1.21302 1.22210 0.89388 0.90654 0.94583 0.89499 0.95332 0.90433 0.76777 0.83903 0.84332 0.75869 0.76001 0.83851 0.83431 0.91221 0.93994 0.94746 0.93694 0.95957 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.07 37.16 0.30 -2.68 16 2 C 0.18 2.95 2.76 -67.93 -0.19 2.77 16 3 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 4 N -0.71 -9.94 5.03 -54.81 -0.28 -10.22 16 5 C 0.55 8.07 7.73 -12.41 -0.10 7.97 16 6 O -0.54 -9.75 16.00 5.30 0.08 -9.67 16 7 C -0.13 -1.43 5.88 -104.95 -0.62 -2.05 16 8 C -0.06 -0.50 9.53 -39.22 -0.37 -0.87 16 9 C -0.14 -1.02 9.45 -39.47 -0.37 -1.39 16 10 C 0.16 1.50 6.70 -83.59 -0.56 0.94 16 11 N -0.33 -3.09 3.81 -11.77 -0.04 -3.13 16 12 C 0.26 2.01 11.97 -90.33 -1.08 0.93 16 13 N -0.54 -4.96 11.19 -15.73 -0.18 -5.14 16 14 C 0.21 1.75 13.03 -91.76 -1.20 0.55 16 15 N -0.31 -3.20 12.03 29.30 0.35 -2.85 16 16 C -0.12 -1.16 9.66 -39.47 -0.38 -1.54 16 17 C -0.04 -0.41 9.58 -39.22 -0.38 -0.79 16 18 C -0.16 -2.72 4.24 -89.97 -0.38 -3.10 16 19 C 0.13 2.40 7.85 -8.51 -0.07 2.34 16 20 N -0.60 -14.11 2.18 -184.61 -0.40 -14.52 16 21 C -0.21 -5.59 9.60 -15.06 -0.14 -5.74 16 22 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 24 N -0.92 -25.45 11.50 55.49 0.64 -24.81 16 25 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.16 3.29 6.41 -8.37 -0.05 3.24 16 30 H 0.09 1.93 5.95 -51.93 -0.31 1.63 16 31 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.08 1.76 6.33 -51.93 -0.33 1.43 16 33 H 0.40 4.57 6.62 -40.82 -0.27 4.30 16 34 H 0.14 0.94 6.39 -52.49 -0.34 0.60 16 35 H 0.14 0.56 6.79 -52.48 -0.36 0.20 16 36 H 0.23 0.71 7.08 -52.49 -0.37 0.34 16 37 H 0.22 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.14 1.34 7.72 -52.49 -0.41 0.93 16 39 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.75 5.72 -51.93 -0.30 1.45 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -33.46 373.29 -10.45 -43.91 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.55 Total: 3.98 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -5.68 Total: 0.38 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.09 Total: -60.66 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.46 -10.45 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969884248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.318 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds