Wall clock time and date at job start Wed Apr 1 2020 00:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21569 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.47674 * 119.99692 * 179.97438 * 5 4 2 8 8 C 1.39707 * 120.07886 * 359.72147 * 7 5 4 9 9 C 1.37726 * 119.91790 * 179.76286 * 8 7 5 10 10 C 1.39050 * 120.08170 * 0.49333 * 9 8 7 11 11 N 1.39866 * 119.92113 * 179.74063 * 10 9 8 12 12 C 1.34804 * 126.84836 * 359.73626 * 11 10 9 13 13 N 1.30819 * 108.02099 * 179.89127 * 12 11 10 14 14 C 1.33293 * 109.84588 * 0.37655 * 13 12 11 15 15 N 1.30726 * 109.01354 * 359.76534 * 14 13 12 16 16 C 1.39045 * 120.15700 * 359.76145 * 10 9 8 17 17 C 1.37734 * 120.07778 * 0.02562 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.07999 * 120.03910 * 0.02562 * 8 7 5 35 35 H 1.08004 * 119.95915 * 180.25584 * 9 8 7 36 36 H 1.08001 * 125.98609 * 0.02562 * 12 11 10 37 37 H 1.08003 * 125.49387 * 179.76059 * 14 13 12 38 38 H 1.07997 * 119.96341 * 179.97438 * 16 10 9 39 39 H 1.07995 * 120.03934 * 179.97438 * 17 16 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 45 45 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4119 7 6 2.6398 -0.7146 -3.5627 8 6 2.9784 -2.0686 -3.5001 9 6 3.4329 -2.7157 -4.6277 10 6 3.5647 -2.0207 -5.8248 11 7 4.0318 -2.6799 -6.9665 12 6 4.3958 -3.9745 -7.0604 13 7 4.7703 -4.2012 -8.2932 14 6 4.6684 -3.0821 -9.0102 15 7 4.2208 -2.1236 -8.2422 16 6 3.2337 -0.6718 -5.8894 17 6 2.7744 -0.0192 -4.7669 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -4.2157 -0.4976 2.7570 27 1 -4.3342 -2.9151 2.9011 28 1 -3.5585 -1.6236 4.8017 29 6 1.1558 -1.8880 1.7197 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 2.8798 -2.6081 -2.5698 35 1 3.6909 -3.7635 -4.5811 36 1 4.3789 -4.6982 -6.2590 37 1 4.9158 -2.9832 -10.0568 38 1 3.3377 -0.1349 -6.8207 39 1 2.5178 1.0286 -4.8177 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969884248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:43 Heat of formation + Delta-G solvation = 141.103195 kcal Electronic energy + Delta-G solvation = -28494.887559 eV Core-core repulsion = 24516.386659 eV Total energy + Delta-G solvation = -3978.500900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.38054 -41.49128 -40.43435 -39.33540 -35.94198 -35.28233 -34.13722 -32.77615 -32.21595 -31.47671 -30.20660 -29.49057 -26.39625 -26.20533 -25.51366 -24.48909 -23.59497 -22.71858 -22.15057 -21.32992 -20.34130 -19.53744 -18.77326 -18.38339 -17.29186 -16.93767 -16.82152 -16.67156 -16.54482 -16.10413 -15.79224 -15.64533 -15.46827 -15.18983 -14.94113 -14.51895 -14.44750 -14.12331 -13.90645 -13.69054 -13.47533 -13.30310 -12.98683 -12.87427 -12.73619 -12.52088 -12.40061 -12.17533 -12.01200 -11.92218 -11.67314 -11.46830 -11.24968 -11.10926 -11.00855 -10.81657 -10.70124 -10.21592 -10.08192 -9.49900 -8.74278 -7.82915 -5.11880 -0.68941 0.19550 0.70285 1.09925 1.48135 1.48996 1.54140 1.78470 1.90357 2.13042 2.51850 2.74406 3.28311 3.35072 3.39203 3.57024 3.65725 3.68064 3.77426 3.85621 3.93004 3.99047 4.14047 4.34061 4.41517 4.45481 4.58256 4.76230 4.84651 4.88995 4.92023 4.92438 4.96513 5.07106 5.13327 5.14861 5.18613 5.27517 5.32816 5.32871 5.48560 5.55202 5.62531 5.69737 5.82638 5.90561 6.04120 6.59258 6.90885 7.01332 7.22548 7.69576 8.70625 9.33643 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002150 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.789922 B =13022.637270 C =13559.487105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.185 3.815 3 H 0.077 0.923 4 N -0.701 5.701 5 C 0.555 3.445 6 O -0.582 6.582 7 C -0.146 4.146 8 C -0.049 4.049 9 C -0.125 4.125 10 C 0.164 3.836 11 N -0.343 5.343 12 C 0.272 3.728 13 N -0.562 5.562 14 C 0.208 3.792 15 N -0.349 5.349 16 C -0.128 4.128 17 C -0.045 4.045 18 C -0.128 4.128 19 C 0.122 3.878 20 N -0.631 5.631 21 C -0.214 4.214 22 H 0.076 0.924 23 C -0.056 4.056 24 N -0.942 5.942 25 Si 0.961 3.039 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.282 1.282 29 C 0.157 3.843 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.050 0.950 33 H 0.412 0.588 34 H 0.167 0.833 35 H 0.181 0.819 36 H 0.267 0.733 37 H 0.251 0.749 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.245 0.755 44 H 0.020 0.980 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.682 -2.964 -16.800 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.095 0.905 4 N -0.352 5.352 5 C 0.344 3.656 6 O -0.463 6.463 7 C -0.150 4.150 8 C -0.068 4.068 9 C -0.146 4.146 10 C 0.071 3.929 11 N -0.126 5.126 12 C -0.022 4.022 13 N -0.288 5.288 14 C -0.094 4.094 15 N -0.174 5.174 16 C -0.148 4.148 17 C -0.065 4.065 18 C -0.148 4.148 19 C -0.003 4.003 20 N -0.358 5.358 21 C -0.342 4.342 22 H 0.093 0.907 23 C -0.250 4.250 24 N -0.591 5.591 25 Si 0.791 3.209 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.209 1.209 29 C 0.031 3.969 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.250 0.750 34 H 0.184 0.816 35 H 0.199 0.801 36 H 0.283 0.717 37 H 0.267 0.733 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.037 0.963 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.120 -1.812 -17.151 22.936 hybrid contribution -1.331 -0.341 0.722 1.552 sum 13.789 -2.152 -16.429 21.556 Atomic orbital electron populations 1.21935 0.95573 1.01940 0.99452 1.20319 0.93335 0.95665 0.82590 0.90525 1.45885 1.65685 1.14622 1.08991 1.18531 0.77192 0.86174 0.83736 1.90753 1.52467 1.17548 1.85528 1.20016 1.05668 0.95708 0.93616 1.21459 0.93649 0.91961 0.99702 1.21101 1.02110 1.02301 0.89056 1.17956 0.98268 0.92470 0.84213 1.47790 1.47975 1.09289 1.07580 1.27200 0.91818 0.85738 0.97437 1.70702 1.25726 1.28992 1.03395 1.26862 0.95091 0.85077 1.02333 1.78130 1.25718 1.23937 0.89626 1.20843 1.01381 0.92916 0.99625 1.21142 0.94203 1.00653 0.90463 1.23126 0.99790 0.98434 0.93407 1.22549 0.87428 0.95697 0.94663 1.45912 1.04641 1.21830 1.63386 1.19048 0.84893 1.03138 1.27136 0.90660 1.25319 1.00997 0.96799 1.01904 1.69919 1.34586 1.09927 1.44641 0.85415 0.81127 0.76401 0.77974 1.20980 1.22261 1.20892 1.22190 0.89553 0.91426 0.93696 0.91982 0.96157 0.93086 0.75027 0.81557 0.80136 0.71717 0.73289 0.84241 0.84546 0.87015 0.93579 0.92973 0.94545 0.96275 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.07 71.98 0.58 -4.77 16 2 C 0.19 6.03 2.76 44.99 0.12 6.15 16 3 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 4 N -0.70 -18.54 5.03 -445.58 -2.24 -20.78 16 5 C 0.56 15.82 7.73 86.74 0.67 16.49 16 6 O -0.58 -21.39 16.00 -3.93 -0.06 -21.45 16 7 C -0.15 -3.13 5.88 -20.07 -0.12 -3.25 16 8 C -0.05 -0.67 9.53 22.50 0.21 -0.46 16 9 C -0.13 -1.35 9.45 22.34 0.21 -1.14 16 10 C 0.16 2.64 6.70 38.25 0.26 2.89 16 11 N -0.34 -5.64 3.81 -191.16 -0.73 -6.37 16 12 C 0.27 3.26 11.97 180.25 2.16 5.42 16 13 N -0.56 -9.06 11.19 -203.68 -2.28 -11.33 16 14 C 0.21 3.19 13.03 180.74 2.35 5.54 16 15 N -0.35 -6.75 12.03 -61.20 -0.74 -7.49 16 16 C -0.13 -2.42 9.66 22.34 0.22 -2.21 16 17 C -0.04 -0.96 9.58 22.51 0.22 -0.75 16 18 C -0.13 -3.99 4.24 -10.37 -0.04 -4.03 16 19 C 0.12 4.43 7.85 83.18 0.65 5.08 16 20 N -0.63 -29.33 2.18 -737.98 -1.61 -30.94 16 21 C -0.21 -11.28 9.60 84.03 0.81 -10.47 16 22 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 23 C -0.06 -3.06 5.50 84.86 0.47 -2.59 16 24 N -0.94 -52.99 11.50 21.65 0.25 -52.74 16 25 Si 0.96 44.72 29.55 68.60 2.03 46.74 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 29 C 0.16 6.42 6.41 83.27 0.53 6.95 16 30 H 0.06 2.82 5.95 -2.39 -0.01 2.81 16 31 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.05 2.36 6.33 -2.39 -0.02 2.34 16 33 H 0.41 8.39 6.62 -92.71 -0.61 7.78 16 34 H 0.17 1.48 6.39 -2.91 -0.02 1.46 16 35 H 0.18 0.38 6.79 -2.91 -0.02 0.36 16 36 H 0.27 0.34 7.08 -2.91 -0.02 0.32 16 37 H 0.25 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.14 2.68 7.72 -2.91 -0.02 2.66 16 39 H 0.14 3.11 7.64 -2.91 -0.02 3.09 16 40 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 2.47 5.72 -2.39 -0.01 2.46 16 Total: -1.00 -75.43 373.29 4.35 -71.09 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.43 Total: 14.40 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 9.30 Total: 18.87 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -7.35 Total: -129.65 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.06 Total: -21.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -75.43 4.35 -71.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969884248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.189 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds