Wall clock time and date at job start Wed Apr 1 2020 00:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47520 * 2 1 4 4 N 1.46499 * 109.46951 * 119.99839 * 2 1 3 5 5 C 1.34777 * 119.99935 * 274.99983 * 4 2 1 6 6 O 1.21564 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.47839 * 120.00129 * 179.97438 * 5 4 2 8 8 N 1.34565 * 126.02022 * 0.02562 * 7 5 4 9 9 C 1.30871 * 107.28616 * 179.97438 * 8 7 5 10 10 N 1.34894 * 107.59159 * 0.02562 * 9 8 7 11 11 C 1.40143 * 125.76809 * 179.73914 * 10 9 8 12 12 C 1.38845 * 120.07135 * 359.72207 * 11 10 9 13 13 C 1.38118 * 119.93500 * 179.68285 * 12 11 10 14 14 C 1.38281 * 120.06319 * 0.61735 * 13 12 11 15 15 C 1.38285 * 120.13736 * 359.67945 * 14 13 12 16 16 C 1.38111 * 120.06754 * 359.97438 * 15 14 13 17 17 N 1.28847 * 108.45603 * 359.97438 * 10 9 8 18 18 C 1.53002 * 109.47467 * 239.99522 * 2 1 3 19 19 C 1.53938 * 113.74179 * 158.74398 * 18 2 1 20 20 N 1.47820 * 86.03772 * 222.08452 * 19 18 2 21 21 C 1.36938 * 134.45960 * 204.64615 * 20 19 18 22 22 H 1.08001 * 120.00054 * 179.86614 * 21 20 19 23 23 C 1.38807 * 119.99971 * 359.86562 * 21 20 19 24 24 N 1.31622 * 119.99982 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00209 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47201 * 89.99802 * 25 23 21 27 27 H 1.48500 * 109.47352 * 210.00302 * 25 23 21 28 28 H 1.48500 * 109.47048 * 330.00025 * 25 23 21 29 29 C 1.47586 * 91.04775 * 24.54991 * 20 19 18 30 30 H 1.08997 * 109.47520 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47361 * 300.00627 * 1 2 3 32 32 H 1.09006 * 109.46967 * 60.00210 * 1 2 3 33 33 H 0.96999 * 120.00444 * 94.99636 * 4 2 1 34 34 H 1.07999 * 126.20524 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.03658 * 359.97438 * 12 11 10 36 36 H 1.07994 * 119.96955 * 180.31790 * 13 12 11 37 37 H 1.08001 * 119.93619 * 179.70711 * 14 13 12 38 38 H 1.08005 * 119.96745 * 180.02562 * 15 14 13 39 39 H 1.08006 * 120.03601 * 180.02562 * 16 15 14 40 40 H 1.08999 * 112.94176 * 290.33481 * 18 2 1 41 41 H 1.09000 * 113.77432 * 336.34785 * 19 18 2 42 42 H 1.08998 * 113.77325 * 107.74951 * 19 18 2 43 43 H 0.97002 * 120.00026 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.76871 * 221.15196 * 29 20 19 45 45 H 1.08994 * 113.87317 * 89.76552 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1614 2.4116 7 6 2.6392 -0.7152 3.5644 8 7 2.9923 -2.0114 3.6412 9 6 3.3708 -2.2390 4.8731 10 7 3.2505 -1.0825 5.5569 11 6 3.5498 -0.8980 6.9135 12 6 4.0098 -1.9636 7.6756 13 6 4.3101 -1.7771 9.0108 14 6 4.1410 -0.5337 9.5917 15 6 3.6772 0.5280 8.8369 16 6 3.3819 0.3495 7.4995 17 7 2.8093 -0.1774 4.7530 18 6 2.0401 -0.7213 -1.2492 19 6 3.4848 -0.3522 -1.6315 20 7 2.9980 -0.3179 -3.0268 21 6 3.5876 -0.4760 -4.2525 22 1 2.9930 -0.4041 -5.1512 23 6 4.9497 -0.7287 -4.3400 24 7 5.6745 -0.8159 -3.2448 25 14 5.7543 -0.9437 -6.0120 26 1 6.2192 0.3754 -6.5110 27 1 6.9139 -1.8631 -5.8889 28 1 4.7693 -1.5144 -6.9656 29 6 1.6214 -0.0473 -2.5684 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1527 34 1 3.7168 -3.1819 5.2702 35 1 4.1371 -2.9363 7.2237 36 1 4.6728 -2.6043 9.6028 37 1 4.3720 -0.3913 10.6371 38 1 3.5465 1.4981 9.2933 39 1 3.0201 1.1792 6.9103 40 1 1.8528 -1.7949 -1.2261 41 1 3.8048 0.6189 -1.2539 42 1 4.2071 -1.1449 -1.4364 43 1 6.6265 -0.9921 -3.3060 44 1 0.8587 -0.5970 -3.1199 45 1 1.3909 1.0130 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969922596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:52 Heat of formation + Delta-G solvation = 149.798991 kcal Electronic energy + Delta-G solvation = -28073.336915 eV Core-core repulsion = 24095.213094 eV Total energy + Delta-G solvation = -3978.123822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.91491 -39.88243 -39.46062 -37.93961 -34.97139 -34.75441 -32.48550 -32.15909 -31.43159 -30.72364 -29.65610 -27.46605 -25.59156 -24.58080 -24.41494 -23.81619 -22.61078 -21.84380 -21.10236 -20.28466 -19.39701 -18.81177 -17.30300 -16.97639 -16.81087 -16.61042 -16.16489 -15.52116 -15.37378 -14.85425 -14.74513 -14.62297 -14.22002 -13.99974 -13.80519 -13.49724 -13.40066 -12.97873 -12.61964 -12.41124 -12.25286 -12.08110 -11.64777 -11.61017 -11.35159 -11.27376 -11.23070 -10.87918 -10.74135 -10.67695 -10.32201 -10.22262 -10.15148 -9.79962 -9.70168 -9.65073 -9.35896 -8.99405 -8.76202 -8.74205 -6.81588 -5.70916 -3.03156 0.17963 0.70172 1.50228 1.77298 1.93175 3.05658 3.15584 3.39405 3.42759 3.47184 3.49373 3.81760 4.00138 4.21503 4.37276 4.49745 4.53397 4.55140 4.72436 4.89410 5.01494 5.14869 5.33008 5.34305 5.35922 5.58180 5.59291 5.64095 5.71293 5.75409 5.85053 5.86736 6.01004 6.02006 6.08252 6.11490 6.28875 6.40352 6.42315 6.46138 6.62742 6.70682 6.84080 7.30582 7.43227 7.52625 7.62839 7.83531 8.03876 8.29707 9.10132 9.76508 10.66246 11.46096 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.002038 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.579999 B =13736.632518 C =14670.009346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.090 0.910 4 N -0.693 5.693 5 C 0.613 3.387 6 O -0.521 6.521 7 C 0.159 3.841 8 N -0.472 5.472 9 C 0.197 3.803 10 N -0.255 5.255 11 C 0.130 3.870 12 C -0.122 4.122 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.099 4.099 16 C -0.102 4.102 17 N -0.253 5.253 18 C -0.146 4.146 19 C 0.170 3.830 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.229 0.771 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -4.340 28.471 29.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 H 0.108 0.892 4 N -0.344 5.344 5 C 0.394 3.606 6 O -0.394 6.394 7 C -0.120 4.120 8 N -0.196 5.196 9 C -0.097 4.097 10 N -0.043 5.043 11 C 0.040 3.960 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.122 4.122 17 N -0.090 5.090 18 C -0.166 4.166 19 C 0.045 3.955 20 N -0.339 5.339 21 C -0.349 4.349 22 H 0.097 0.903 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.245 0.755 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.866 -3.097 27.991 28.766 hybrid contribution 0.888 -0.743 -0.655 1.331 sum -4.978 -3.841 27.336 28.050 Atomic orbital electron populations 1.22146 0.95385 1.01981 1.02240 1.21210 0.93673 0.97636 0.82755 0.89151 1.45810 1.65410 1.14704 1.08478 1.16226 0.78126 0.85355 0.80873 1.90826 1.49891 1.14505 1.84136 1.24031 1.05157 0.89027 0.93824 1.71380 1.16515 1.14521 1.17154 1.26597 1.01597 0.93645 0.87868 1.44592 1.43711 1.07645 1.08400 1.17674 1.03175 0.96353 0.78848 1.20879 1.01073 0.97638 0.94664 1.21032 0.98924 0.97979 0.93657 1.21377 0.98598 0.92848 1.00574 1.21167 0.97863 0.99805 0.92889 1.21124 0.99492 0.95859 0.95720 1.74376 1.16060 1.17191 1.01324 1.23833 1.00965 0.99823 0.92014 1.22308 0.91419 0.98572 0.83224 1.45997 1.03297 1.82580 1.02010 1.19023 0.91428 1.41492 0.82981 0.90274 1.24789 0.96088 1.02500 0.97228 1.69826 1.06034 1.55240 1.25717 0.86127 0.79006 0.77501 0.83173 1.21686 1.21684 1.20637 1.22489 0.89661 0.96637 0.90780 0.92529 0.92692 0.91161 0.75439 0.75499 0.84581 0.84479 0.85013 0.84582 0.83842 0.89164 0.95583 0.90950 0.93706 0.93696 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.31 37.16 0.35 -1.87 16 2 C 0.15 2.47 2.38 -67.93 -0.16 2.31 16 3 H 0.09 1.66 7.41 -51.93 -0.39 1.28 16 4 N -0.69 -10.87 5.07 -54.75 -0.28 -11.14 16 5 C 0.61 10.56 7.79 -12.33 -0.10 10.47 16 6 O -0.52 -10.39 16.75 5.31 0.09 -10.30 16 7 C 0.16 2.50 7.96 -156.30 -1.24 1.26 16 8 N -0.47 -6.32 11.09 -12.28 -0.14 -6.46 16 9 C 0.20 1.95 11.93 -90.20 -1.08 0.88 16 10 N -0.25 -2.89 3.52 -11.77 -0.04 -2.93 16 11 C 0.13 1.14 6.67 -83.60 -0.56 0.58 16 12 C -0.12 -0.68 9.45 -39.40 -0.37 -1.05 16 13 C -0.10 -0.41 10.04 -39.61 -0.40 -0.81 16 14 C -0.12 -0.51 10.04 -39.55 -0.40 -0.91 16 15 C -0.10 -0.57 10.04 -39.61 -0.40 -0.97 16 16 C -0.10 -0.86 9.61 -39.40 -0.38 -1.24 16 17 N -0.25 -3.79 11.32 32.08 0.36 -3.43 16 18 C -0.15 -2.71 3.47 -89.70 -0.31 -3.02 16 19 C 0.17 4.09 7.08 -2.84 -0.02 4.07 16 20 N -0.61 -16.04 3.70 -177.69 -0.66 -16.70 16 21 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.92 -27.99 11.39 55.49 0.63 -27.36 16 25 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.13 2.68 7.64 -2.96 -0.02 2.65 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 33 H 0.41 5.90 8.31 -40.82 -0.34 5.57 16 34 H 0.23 1.01 7.01 -52.49 -0.37 0.64 16 35 H 0.14 0.40 6.71 -52.49 -0.35 0.04 16 36 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 37 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 38 H 0.14 0.51 8.06 -52.48 -0.42 0.08 16 39 H 0.14 1.37 7.68 -52.48 -0.40 0.97 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 42 H 0.07 1.92 7.17 -51.93 -0.37 1.55 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -36.87 384.11 -10.56 -47.43 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.95 Total: 2.06 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -5.34 Total: 5.47 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -0.12 Total: -68.01 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.87 -10.56 -47.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969922596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.230 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds