Wall clock time and date at job start Wed Apr 1 2020 00:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47520 * 2 1 4 4 N 1.46499 * 109.46951 * 119.99839 * 2 1 3 5 5 C 1.34777 * 119.99935 * 274.99983 * 4 2 1 6 6 O 1.21564 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.47839 * 120.00129 * 179.97438 * 5 4 2 8 8 N 1.34565 * 126.02022 * 0.02562 * 7 5 4 9 9 C 1.30871 * 107.28616 * 179.97438 * 8 7 5 10 10 N 1.34894 * 107.59159 * 0.02562 * 9 8 7 11 11 C 1.40143 * 125.76809 * 179.73914 * 10 9 8 12 12 C 1.38845 * 120.07135 * 359.72207 * 11 10 9 13 13 C 1.38118 * 119.93500 * 179.68285 * 12 11 10 14 14 C 1.38281 * 120.06319 * 0.61735 * 13 12 11 15 15 C 1.38285 * 120.13736 * 359.67945 * 14 13 12 16 16 C 1.38111 * 120.06754 * 359.97438 * 15 14 13 17 17 N 1.28847 * 108.45603 * 359.97438 * 10 9 8 18 18 C 1.53002 * 109.47467 * 239.99522 * 2 1 3 19 19 C 1.53938 * 113.74179 * 158.74398 * 18 2 1 20 20 N 1.47820 * 86.03772 * 222.08452 * 19 18 2 21 21 C 1.36938 * 134.45960 * 204.64615 * 20 19 18 22 22 H 1.08001 * 120.00054 * 179.86614 * 21 20 19 23 23 C 1.38807 * 119.99971 * 359.86562 * 21 20 19 24 24 N 1.31622 * 119.99982 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00209 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47201 * 89.99802 * 25 23 21 27 27 H 1.48500 * 109.47352 * 210.00302 * 25 23 21 28 28 H 1.48500 * 109.47048 * 330.00025 * 25 23 21 29 29 C 1.47586 * 91.04775 * 24.54991 * 20 19 18 30 30 H 1.08997 * 109.47520 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47361 * 300.00627 * 1 2 3 32 32 H 1.09006 * 109.46967 * 60.00210 * 1 2 3 33 33 H 0.96999 * 120.00444 * 94.99636 * 4 2 1 34 34 H 1.07999 * 126.20524 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.03658 * 359.97438 * 12 11 10 36 36 H 1.07994 * 119.96955 * 180.31790 * 13 12 11 37 37 H 1.08001 * 119.93619 * 179.70711 * 14 13 12 38 38 H 1.08005 * 119.96745 * 180.02562 * 15 14 13 39 39 H 1.08006 * 120.03601 * 180.02562 * 16 15 14 40 40 H 1.08999 * 112.94176 * 290.33481 * 18 2 1 41 41 H 1.09000 * 113.77432 * 336.34785 * 19 18 2 42 42 H 1.08998 * 113.77325 * 107.74951 * 19 18 2 43 43 H 0.97002 * 120.00026 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.76871 * 221.15196 * 29 20 19 45 45 H 1.08994 * 113.87317 * 89.76552 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1614 2.4116 7 6 2.6392 -0.7152 3.5644 8 7 2.9923 -2.0114 3.6412 9 6 3.3708 -2.2390 4.8731 10 7 3.2505 -1.0825 5.5569 11 6 3.5498 -0.8980 6.9135 12 6 4.0098 -1.9636 7.6756 13 6 4.3101 -1.7771 9.0108 14 6 4.1410 -0.5337 9.5917 15 6 3.6772 0.5280 8.8369 16 6 3.3819 0.3495 7.4995 17 7 2.8093 -0.1774 4.7530 18 6 2.0401 -0.7213 -1.2492 19 6 3.4848 -0.3522 -1.6315 20 7 2.9980 -0.3179 -3.0268 21 6 3.5876 -0.4760 -4.2525 22 1 2.9930 -0.4041 -5.1512 23 6 4.9497 -0.7287 -4.3400 24 7 5.6745 -0.8159 -3.2448 25 14 5.7543 -0.9437 -6.0120 26 1 6.2192 0.3754 -6.5110 27 1 6.9139 -1.8631 -5.8889 28 1 4.7693 -1.5144 -6.9656 29 6 1.6214 -0.0473 -2.5684 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2489 -1.6317 1.1527 34 1 3.7168 -3.1819 5.2702 35 1 4.1371 -2.9363 7.2237 36 1 4.6728 -2.6043 9.6028 37 1 4.3720 -0.3913 10.6371 38 1 3.5465 1.4981 9.2933 39 1 3.0201 1.1792 6.9103 40 1 1.8528 -1.7949 -1.2261 41 1 3.8048 0.6189 -1.2539 42 1 4.2071 -1.1449 -1.4364 43 1 6.6265 -0.9921 -3.3060 44 1 0.8587 -0.5970 -3.1199 45 1 1.3909 1.0130 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969922596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:51 Heat of formation + Delta-G solvation = 126.141223 kcal Electronic energy + Delta-G solvation = -28074.362793 eV Core-core repulsion = 24095.213094 eV Total energy + Delta-G solvation = -3979.149699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.82949 -41.06732 -40.20073 -39.59434 -36.31196 -35.70872 -34.17936 -33.30397 -32.05957 -31.93696 -30.46998 -29.35409 -26.90151 -26.12743 -25.47427 -25.07937 -23.48056 -22.71210 -22.28422 -21.56505 -20.79086 -19.75775 -18.77970 -18.35020 -17.91693 -17.58739 -17.14278 -16.90739 -16.51290 -15.93868 -15.87367 -15.72792 -15.50405 -15.19168 -14.84549 -14.69125 -14.45076 -14.16435 -14.01242 -13.45527 -13.42948 -13.26232 -13.08713 -12.91654 -12.72002 -12.69142 -12.53261 -12.14815 -12.09374 -12.02172 -11.76102 -11.69923 -11.59745 -11.39634 -11.19091 -11.18258 -10.86400 -10.17879 -10.07527 -9.55682 -8.91737 -7.89608 -5.23597 -0.46974 0.28273 0.51747 0.98122 1.13186 1.44818 1.47561 1.56171 1.90631 2.15040 2.47813 2.71143 2.92751 3.22250 3.31310 3.38948 3.59780 3.75162 3.85901 3.89300 3.93484 4.19889 4.28694 4.34028 4.37561 4.45312 4.50646 4.58686 4.72843 4.75107 4.81145 4.85974 4.96945 4.98456 5.01505 5.06679 5.25758 5.27034 5.31761 5.33163 5.39184 5.46862 5.54215 5.55478 5.65331 5.90227 5.93757 6.30991 6.79656 6.91709 7.01386 7.61494 8.57412 9.27388 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018065 B = 0.002038 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.579999 B =13736.632518 C =14670.009346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.066 0.934 4 N -0.685 5.685 5 C 0.612 3.388 6 O -0.559 6.559 7 C 0.132 3.868 8 N -0.492 5.492 9 C 0.210 3.790 10 N -0.249 5.249 11 C 0.092 3.908 12 C -0.114 4.114 13 C -0.093 4.093 14 C -0.107 4.107 15 C -0.105 4.105 16 C -0.128 4.128 17 N -0.282 5.282 18 C -0.110 4.110 19 C 0.166 3.834 20 N -0.644 5.644 21 C -0.233 4.233 22 H 0.087 0.913 23 C -0.073 4.073 24 N -0.956 5.956 25 Si 0.981 3.019 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.264 1.264 29 C 0.133 3.867 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.417 0.583 34 H 0.283 0.717 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.003 0.997 42 H 0.040 0.960 43 H 0.247 0.753 44 H 0.069 0.931 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 -6.665 30.272 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.054 3.946 3 H 0.084 0.916 4 N -0.336 5.336 5 C 0.394 3.606 6 O -0.435 6.435 7 C -0.147 4.147 8 N -0.217 5.217 9 C -0.083 4.083 10 N -0.038 5.038 11 C 0.003 3.997 12 C -0.134 4.134 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.147 4.147 17 N -0.120 5.120 18 C -0.129 4.129 19 C 0.040 3.960 20 N -0.370 5.370 21 C -0.361 4.361 22 H 0.105 0.895 23 C -0.266 4.266 24 N -0.606 5.606 25 Si 0.809 3.191 26 H -0.217 1.217 27 H -0.221 1.221 28 H -0.188 1.188 29 C 0.008 3.992 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.254 0.746 34 H 0.298 0.702 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.179 0.821 38 H 0.168 0.832 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.020 0.980 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.425 -5.439 29.804 30.970 hybrid contribution 1.086 -0.013 -0.988 1.468 sum -5.339 -5.452 28.815 29.809 Atomic orbital electron populations 1.22067 0.92666 1.03406 1.02645 1.21031 0.95567 0.95955 0.82010 0.91571 1.45708 1.65004 1.14886 1.07976 1.16459 0.77489 0.84985 0.81627 1.90785 1.51716 1.16092 1.84915 1.23652 1.07298 0.90166 0.93534 1.71317 1.17699 1.13413 1.19256 1.27591 0.99408 0.94651 0.86635 1.44782 1.42519 1.07373 1.09077 1.18117 1.05914 0.97732 0.77972 1.21296 0.99320 0.97786 0.94983 1.21520 0.97514 0.98875 0.93235 1.21809 0.96548 0.92363 1.01795 1.21392 0.97801 1.01319 0.91863 1.21123 1.01130 0.95533 0.96962 1.74285 1.16958 1.19064 1.01692 1.23459 0.96307 1.00694 0.92480 1.22181 0.94050 0.96411 0.83330 1.46423 1.05901 1.82838 1.01855 1.19482 0.91946 1.40290 0.84420 0.89499 1.25694 0.96865 1.03082 1.00914 1.70038 1.05784 1.56847 1.27895 0.85037 0.77891 0.77116 0.79052 1.21656 1.22065 1.18843 1.22682 0.87651 0.97688 0.91200 0.90553 0.93163 0.89892 0.74572 0.70182 0.81540 0.80983 0.82058 0.83194 0.86564 0.87550 0.97955 0.94121 0.94407 0.91287 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.31 71.98 0.67 -3.28 16 2 C 0.16 5.22 2.38 44.99 0.11 5.33 16 3 H 0.07 2.53 7.41 -2.39 -0.02 2.52 16 4 N -0.68 -22.04 5.07 -445.41 -2.26 -24.30 16 5 C 0.61 22.22 7.79 86.78 0.68 22.90 16 6 O -0.56 -23.77 16.75 -3.92 -0.07 -23.84 16 7 C 0.13 4.34 7.96 137.10 1.09 5.43 16 8 N -0.49 -13.14 11.09 -192.78 -2.14 -15.28 16 9 C 0.21 3.86 11.93 180.20 2.15 6.01 16 10 N -0.25 -5.64 3.52 -191.15 -0.67 -6.32 16 11 C 0.09 1.56 6.67 38.10 0.25 1.81 16 12 C -0.11 -0.91 9.45 22.39 0.21 -0.70 16 13 C -0.09 -0.41 10.04 22.25 0.22 -0.19 16 14 C -0.11 -0.60 10.04 22.29 0.22 -0.38 16 15 C -0.11 -1.11 10.04 22.25 0.22 -0.89 16 16 C -0.13 -2.25 9.61 22.39 0.22 -2.04 16 17 N -0.28 -8.91 11.32 -52.42 -0.59 -9.50 16 18 C -0.11 -4.03 3.47 -10.14 -0.04 -4.07 16 19 C 0.17 8.29 7.08 86.44 0.61 8.91 16 20 N -0.64 -34.05 3.70 -716.09 -2.65 -36.70 16 21 C -0.23 -13.44 10.70 84.03 0.90 -12.54 16 22 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 23 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 24 N -0.96 -60.07 11.39 21.65 0.25 -59.82 16 25 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 29 C 0.13 5.28 7.64 86.49 0.66 5.94 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.99 7.52 -2.38 -0.02 1.97 16 33 H 0.42 12.16 8.31 -92.71 -0.77 11.39 16 34 H 0.28 1.38 7.01 -2.91 -0.02 1.36 16 35 H 0.17 0.19 6.71 -2.91 -0.02 0.17 16 36 H 0.17 -0.39 8.06 -2.91 -0.02 -0.42 16 37 H 0.16 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 39 H 0.12 2.59 7.68 -2.91 -0.02 2.56 16 40 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.00 0.14 7.99 -2.39 -0.02 0.12 16 42 H 0.04 2.27 7.17 -2.39 -0.02 2.25 16 43 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 Total: -1.00 -85.91 384.11 2.80 -83.11 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.26 Total: 15.21 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 8.65 Total: 28.40 kcal Atomic # 7 Polarization: -143.84 SS G_CDS: -8.07 Total: -151.91 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.07 Total: -23.84 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -85.91 2.80 -83.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969922596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.253 kcal (2) G-P(sol) polarization free energy of solvation -85.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds