Wall clock time and date at job start Wed Apr 1 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21559 * 120.00344 * 0.02562 * 5 4 2 7 7 C 1.47836 * 120.00149 * 180.02562 * 5 4 2 8 8 N 1.34570 * 126.02124 * 0.02620 * 7 5 4 9 9 C 1.30868 * 107.29114 * 179.97438 * 8 7 5 10 10 N 1.34883 * 107.59027 * 0.02562 * 9 8 7 11 11 C 1.40138 * 125.77451 * 179.97438 * 10 9 8 12 12 C 1.38850 * 120.06731 * 359.72236 * 11 10 9 13 13 C 1.38122 * 119.93324 * 179.69734 * 12 11 10 14 14 C 1.38282 * 120.06471 * 0.60072 * 13 12 11 15 15 C 1.38285 * 120.13495 * 359.67363 * 14 13 12 16 16 C 1.38112 * 120.07061 * 0.02562 * 15 14 13 17 17 N 1.28861 * 108.45603 * 359.72155 * 10 9 8 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 31 31 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 32 32 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.07993 * 126.20769 * 179.97438 * 9 8 7 35 35 H 1.08002 * 120.03221 * 359.97438 * 12 11 10 36 36 H 1.07994 * 119.96836 * 180.31682 * 13 12 11 37 37 H 1.08004 * 119.92950 * 179.69994 * 14 13 12 38 38 H 1.08001 * 119.96341 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.03195 * 180.02562 * 16 15 14 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1613 -2.4116 7 6 2.6394 -0.7153 -3.5643 8 7 2.9917 -2.0117 -3.6412 9 6 3.3697 -2.2397 -4.8732 10 7 3.2509 -1.0829 -5.5567 11 6 3.5554 -0.8971 -6.9119 12 6 4.0306 -1.9588 -7.6700 13 6 4.3239 -1.7742 -9.0071 14 6 4.1566 -0.5303 -9.5876 15 6 3.6889 0.5305 -8.8337 16 6 3.3880 0.3505 -7.4979 17 7 2.8050 -0.1788 -4.7540 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6317 -1.1525 34 1 3.7149 -3.1827 -5.2705 35 1 4.1665 -2.9293 -7.2159 36 1 4.6887 -2.6008 -9.5985 37 1 4.3912 -0.3872 -10.6321 38 1 3.5589 1.5006 -9.2901 39 1 3.0224 1.1793 -6.9098 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969922597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:55 Heat of formation + Delta-G solvation = 168.183390 kcal Electronic energy + Delta-G solvation = -28625.593112 eV Core-core repulsion = 24648.266498 eV Total energy + Delta-G solvation = -3977.326614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.97697 -40.03746 -39.69914 -38.56536 -35.01941 -34.60112 -32.53857 -32.34939 -31.47809 -30.54219 -29.47667 -27.95604 -25.44013 -25.38517 -24.46839 -23.76417 -22.58491 -21.86246 -21.07564 -20.27025 -19.30884 -18.82125 -17.52884 -17.20286 -17.03377 -16.77120 -16.16502 -15.63441 -15.41649 -15.18346 -14.97795 -14.75152 -14.57233 -14.10161 -13.80503 -13.67361 -13.49314 -13.12946 -12.67531 -12.53415 -12.29709 -11.90864 -11.69440 -11.65053 -11.40531 -11.30551 -11.15282 -10.80790 -10.75519 -10.52766 -10.30493 -10.28521 -10.13592 -9.98206 -9.69317 -9.17350 -9.05144 -9.04034 -8.81810 -8.79607 -7.05349 -6.25251 -3.17783 0.13087 0.65928 1.44882 1.71659 1.86999 2.99910 3.11158 3.34069 3.42731 3.46334 3.66703 3.75631 3.94811 4.16737 4.32495 4.48104 4.50569 4.62906 4.68324 4.80979 4.85802 4.96863 5.05480 5.18788 5.31644 5.49337 5.54664 5.58556 5.70067 5.73308 5.82497 5.88669 5.96665 6.05169 6.07030 6.23514 6.27272 6.33937 6.36876 6.41880 6.47658 6.59804 6.81742 6.95293 7.17387 7.30645 7.48118 7.78225 8.24896 8.28938 9.02573 9.55308 10.42608 11.25631 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.002238 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.243611 B =12510.041077 C =12928.224284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.173 3.827 3 H 0.088 0.912 4 N -0.698 5.698 5 C 0.613 3.387 6 O -0.518 6.518 7 C 0.159 3.841 8 N -0.474 5.474 9 C 0.197 3.803 10 N -0.254 5.254 11 C 0.129 3.871 12 C -0.122 4.122 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.102 4.102 17 N -0.252 5.252 18 C -0.146 4.146 19 C 0.132 3.868 20 N -0.624 5.624 21 C -0.297 4.297 22 H 0.082 0.918 23 C -0.025 4.025 24 N -0.936 5.936 25 Si 1.067 2.933 26 H -0.298 1.298 27 H -0.290 1.290 28 H -0.288 1.288 29 C 0.097 3.903 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.229 0.771 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.395 -1.307 -26.819 33.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 H 0.106 0.894 4 N -0.349 5.349 5 C 0.394 3.606 6 O -0.391 6.391 7 C -0.121 4.121 8 N -0.198 5.198 9 C -0.097 4.097 10 N -0.043 5.043 11 C 0.039 3.961 12 C -0.142 4.142 13 C -0.116 4.116 14 C -0.133 4.133 15 C -0.117 4.117 16 C -0.122 4.122 17 N -0.088 5.088 18 C -0.166 4.166 19 C 0.005 3.995 20 N -0.352 5.352 21 C -0.424 4.424 22 H 0.100 0.900 23 C -0.224 4.224 24 N -0.578 5.578 25 Si 0.901 3.099 26 H -0.225 1.225 27 H -0.219 1.219 28 H -0.215 1.215 29 C -0.028 4.028 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.243 0.757 34 H 0.245 0.755 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.216 -1.459 -26.979 32.585 hybrid contribution 0.790 0.615 0.409 1.082 sum 19.006 -0.843 -26.570 32.679 Atomic orbital electron populations 1.22251 0.92962 1.03529 1.02277 1.20722 0.95654 0.95771 0.80839 0.89444 1.45890 1.65515 1.14627 1.08866 1.16196 0.78226 0.85410 0.80794 1.90833 1.49662 1.14629 1.83968 1.24037 1.05182 0.89046 0.93823 1.71372 1.16648 1.14393 1.17375 1.26588 1.01571 0.93651 0.87882 1.44596 1.43507 1.07680 1.08525 1.17675 1.03137 0.96410 0.78914 1.20878 1.01031 0.97651 0.94685 1.21036 0.99001 0.97964 0.93589 1.21385 0.98541 0.92822 1.00594 1.21172 0.97786 0.99860 0.92883 1.21126 0.99450 0.95838 0.95757 1.74386 1.15868 1.17363 1.01230 1.23243 0.98558 0.99661 0.95113 1.22286 0.88369 0.96204 0.92645 1.46069 1.05066 1.20627 1.63473 1.20065 0.83888 1.00473 1.37938 0.90010 1.25659 0.94889 1.00719 1.01095 1.70914 1.19217 1.31626 1.36045 0.83770 0.74386 0.76164 0.75617 1.22511 1.21879 1.21464 1.22874 0.92232 0.93137 0.94585 0.88716 0.94373 0.91893 0.75676 0.75475 0.84596 0.84455 0.84978 0.84552 0.83838 0.90188 0.93402 0.94115 0.92970 0.93721 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.06 37.16 0.30 -2.82 16 2 C 0.17 3.01 2.76 -67.93 -0.19 2.83 16 3 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 4 N -0.70 -11.17 5.07 -54.76 -0.28 -11.44 16 5 C 0.61 10.58 7.79 -12.33 -0.10 10.48 16 6 O -0.52 -10.43 16.75 5.31 0.09 -10.34 16 7 C 0.16 2.45 7.96 -156.31 -1.24 1.21 16 8 N -0.47 -6.14 11.09 -12.29 -0.14 -6.28 16 9 C 0.20 1.86 11.93 -90.21 -1.08 0.79 16 10 N -0.25 -2.79 3.52 -11.77 -0.04 -2.83 16 11 C 0.13 1.09 6.67 -83.61 -0.56 0.53 16 12 C -0.12 -0.63 9.45 -39.40 -0.37 -1.00 16 13 C -0.10 -0.38 10.04 -39.61 -0.40 -0.78 16 14 C -0.11 -0.47 10.04 -39.55 -0.40 -0.87 16 15 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 16 C -0.10 -0.83 9.61 -39.40 -0.38 -1.21 16 17 N -0.25 -3.70 11.32 32.08 0.36 -3.33 16 18 C -0.15 -2.46 4.25 -89.97 -0.38 -2.84 16 19 C 0.13 2.51 7.86 -8.51 -0.07 2.44 16 20 N -0.62 -14.68 2.09 -184.59 -0.39 -15.07 16 21 C -0.30 -8.32 9.92 -15.06 -0.15 -8.47 16 22 H 0.08 2.44 8.05 -52.49 -0.42 2.01 16 23 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 24 N -0.94 -29.57 13.71 55.49 0.76 -28.80 16 25 Si 1.07 26.82 24.89 -169.99 -4.23 22.59 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.29 -6.88 5.95 56.52 0.34 -6.54 16 28 H -0.29 -6.74 6.22 56.52 0.35 -6.39 16 29 C 0.10 1.98 4.68 -8.36 -0.04 1.94 16 30 H 0.09 2.14 5.93 -51.93 -0.31 1.83 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.40 5.50 -51.93 -0.29 1.12 16 33 H 0.41 5.89 8.31 -40.82 -0.34 5.55 16 34 H 0.23 0.89 7.01 -52.49 -0.37 0.52 16 35 H 0.14 0.34 6.71 -52.49 -0.35 -0.01 16 36 H 0.14 0.19 8.06 -52.49 -0.42 -0.24 16 37 H 0.13 0.24 8.06 -52.48 -0.42 -0.19 16 38 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.14 1.34 7.68 -52.49 -0.40 0.93 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 42 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 43 H 0.26 8.14 8.73 -40.82 -0.36 7.79 16 44 H 0.05 0.89 7.61 -51.93 -0.40 0.50 16 45 H 0.06 1.19 3.47 -51.93 -0.18 1.01 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -36.36 367.56 -9.53 -45.89 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.67 Total: 3.62 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -5.54 Total: 0.45 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: 0.28 Total: -67.76 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -4.23 Total: 22.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.36 -9.53 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969922597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.071 kcal (2) G-P(sol) polarization free energy of solvation -36.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds