Wall clock time and date at job start Wed Apr 1 2020 00:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21559 * 120.00344 * 0.02562 * 5 4 2 7 7 C 1.47836 * 120.00149 * 180.02562 * 5 4 2 8 8 N 1.34570 * 126.02124 * 0.02620 * 7 5 4 9 9 C 1.30868 * 107.29114 * 179.97438 * 8 7 5 10 10 N 1.34883 * 107.59027 * 0.02562 * 9 8 7 11 11 C 1.40138 * 125.77451 * 179.97438 * 10 9 8 12 12 C 1.38850 * 120.06731 * 359.72236 * 11 10 9 13 13 C 1.38122 * 119.93324 * 179.69734 * 12 11 10 14 14 C 1.38282 * 120.06471 * 0.60072 * 13 12 11 15 15 C 1.38285 * 120.13495 * 359.67363 * 14 13 12 16 16 C 1.38112 * 120.07061 * 0.02562 * 15 14 13 17 17 N 1.28861 * 108.45603 * 359.72155 * 10 9 8 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 31 31 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 32 32 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.07993 * 126.20769 * 179.97438 * 9 8 7 35 35 H 1.08002 * 120.03221 * 359.97438 * 12 11 10 36 36 H 1.07994 * 119.96836 * 180.31682 * 13 12 11 37 37 H 1.08004 * 119.92950 * 179.69994 * 14 13 12 38 38 H 1.08001 * 119.96341 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.03195 * 180.02562 * 16 15 14 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1613 -2.4116 7 6 2.6394 -0.7153 -3.5643 8 7 2.9917 -2.0117 -3.6412 9 6 3.3697 -2.2397 -4.8732 10 7 3.2509 -1.0829 -5.5567 11 6 3.5554 -0.8971 -6.9119 12 6 4.0306 -1.9588 -7.6700 13 6 4.3239 -1.7742 -9.0071 14 6 4.1566 -0.5303 -9.5876 15 6 3.6889 0.5305 -8.8337 16 6 3.3880 0.3505 -7.4979 17 7 2.8050 -0.1788 -4.7540 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6317 -1.1525 34 1 3.7149 -3.1827 -5.2705 35 1 4.1665 -2.9293 -7.2159 36 1 4.6887 -2.6008 -9.5985 37 1 4.3912 -0.3872 -10.6321 38 1 3.5589 1.5006 -9.2901 39 1 3.0224 1.1793 -6.9098 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969922597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:54 Heat of formation + Delta-G solvation = 143.901984 kcal Electronic energy + Delta-G solvation = -28626.646033 eV Core-core repulsion = 24648.266498 eV Total energy + Delta-G solvation = -3978.379535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.83934 -41.43495 -40.33755 -39.94097 -36.16473 -35.68421 -34.47197 -33.31160 -31.94295 -31.81308 -30.42789 -29.81451 -26.99484 -26.59522 -25.30276 -25.08099 -23.41666 -22.74908 -22.34268 -21.50916 -20.64110 -19.84047 -19.35590 -18.37451 -17.92700 -17.52235 -17.14386 -17.01366 -16.85037 -16.16909 -15.88236 -15.87073 -15.73290 -15.20085 -15.14251 -15.05782 -14.45360 -14.18929 -13.97717 -13.56562 -13.44334 -13.36065 -13.06742 -12.95804 -12.69352 -12.50750 -12.20335 -12.14327 -12.09664 -12.04347 -11.73926 -11.68570 -11.55623 -11.19622 -11.17001 -10.95451 -10.81498 -10.25481 -10.07679 -9.56308 -9.06471 -8.54578 -5.37783 -0.47411 0.28086 0.50093 0.96405 1.12790 1.39741 1.50232 1.67912 1.85853 2.12321 2.58623 2.70916 2.90162 3.07673 3.21193 3.29983 3.53184 3.60531 3.75672 3.85766 3.89607 4.19400 4.21206 4.32987 4.37027 4.40952 4.49790 4.50438 4.66138 4.71683 4.73030 4.80155 4.88012 4.94412 4.97555 4.98567 5.00150 5.25167 5.28869 5.31326 5.31640 5.42757 5.46859 5.54372 5.55647 5.89924 6.02724 6.28740 6.77391 6.78922 6.98681 7.41071 8.36576 8.98581 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.002238 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.243611 B =12510.041077 C =12928.224284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.180 3.820 3 H 0.089 0.911 4 N -0.686 5.686 5 C 0.613 3.387 6 O -0.558 6.558 7 C 0.133 3.867 8 N -0.491 5.491 9 C 0.212 3.788 10 N -0.249 5.249 11 C 0.093 3.907 12 C -0.113 4.113 13 C -0.093 4.093 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.128 4.128 17 N -0.282 5.282 18 C -0.115 4.115 19 C 0.129 3.871 20 N -0.654 5.654 21 C -0.269 4.269 22 H 0.047 0.953 23 C -0.089 4.089 24 N -0.978 5.978 25 Si 1.104 2.896 26 H -0.314 1.314 27 H -0.273 1.273 28 H -0.254 1.254 29 C 0.090 3.910 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.419 0.581 34 H 0.284 0.716 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.244 0.756 44 H 0.065 0.935 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.517 -4.018 -30.092 38.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.077 3.923 3 H 0.107 0.893 4 N -0.338 5.338 5 C 0.396 3.604 6 O -0.434 6.434 7 C -0.146 4.146 8 N -0.216 5.216 9 C -0.081 4.081 10 N -0.037 5.037 11 C 0.003 3.997 12 C -0.133 4.133 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.148 4.148 17 N -0.120 5.120 18 C -0.134 4.134 19 C 0.003 3.997 20 N -0.383 5.383 21 C -0.397 4.397 22 H 0.065 0.935 23 C -0.280 4.280 24 N -0.625 5.625 25 Si 0.931 3.069 26 H -0.242 1.242 27 H -0.200 1.200 28 H -0.179 1.179 29 C -0.034 4.034 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.256 0.744 34 H 0.299 0.701 35 H 0.186 0.814 36 H 0.190 0.810 37 H 0.179 0.821 38 H 0.167 0.833 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 22.425 -4.166 -30.275 37.905 hybrid contribution -0.387 1.578 1.209 2.025 sum 22.038 -2.588 -29.066 36.568 Atomic orbital electron populations 1.22072 0.95630 1.01640 1.00536 1.20521 0.93303 0.96467 0.82045 0.89269 1.45677 1.64991 1.14964 1.08124 1.16457 0.77389 0.85021 0.81540 1.90800 1.51422 1.16400 1.84736 1.23578 1.07388 0.90248 0.93393 1.71310 1.17744 1.13072 1.19428 1.27607 0.99259 0.94611 0.86621 1.44776 1.42347 1.07469 1.09156 1.18102 1.05789 0.97714 0.78106 1.21300 0.99189 0.97828 0.94951 1.21524 0.97600 0.98795 0.93236 1.21808 0.96572 0.92398 1.01768 1.21387 0.97806 1.01329 0.91920 1.21118 1.01111 0.95581 0.96961 1.74299 1.16762 1.19319 1.01633 1.23029 1.00378 0.96893 0.93133 1.22539 0.86583 0.95901 0.94680 1.46124 1.04925 1.23129 1.64102 1.19839 0.86346 0.98565 1.34914 0.93504 1.26915 0.94686 1.03995 1.02446 1.71020 1.21097 1.31540 1.38801 0.83358 0.74952 0.72733 0.75830 1.24234 1.19992 1.17910 1.23108 0.92170 0.93977 0.94184 0.91370 0.95205 0.93681 0.74408 0.70064 0.81399 0.80977 0.82141 0.83298 0.86603 0.85501 0.93487 0.91616 0.94723 0.91737 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.06 71.98 0.58 -5.26 16 2 C 0.18 6.05 2.76 44.99 0.12 6.17 16 3 H 0.09 3.05 7.58 -2.39 -0.02 3.03 16 4 N -0.69 -21.05 5.07 -445.42 -2.26 -23.31 16 5 C 0.61 21.25 7.79 86.78 0.68 21.92 16 6 O -0.56 -23.15 16.75 -3.90 -0.07 -23.22 16 7 C 0.13 4.06 7.96 137.10 1.09 5.15 16 8 N -0.49 -11.79 11.09 -192.80 -2.14 -13.93 16 9 C 0.21 3.38 11.93 180.21 2.15 5.52 16 10 N -0.25 -5.16 3.52 -191.16 -0.67 -5.83 16 11 C 0.09 1.42 6.67 38.11 0.25 1.67 16 12 C -0.11 -0.72 9.45 22.39 0.21 -0.51 16 13 C -0.09 -0.29 10.04 22.25 0.22 -0.07 16 14 C -0.11 -0.50 10.04 22.29 0.22 -0.28 16 15 C -0.11 -1.02 10.04 22.25 0.22 -0.80 16 16 C -0.13 -2.10 9.61 22.39 0.22 -1.89 16 17 N -0.28 -8.39 11.32 -52.42 -0.59 -8.98 16 18 C -0.11 -3.49 4.25 -10.37 -0.04 -3.53 16 19 C 0.13 4.59 7.86 83.18 0.65 5.24 16 20 N -0.65 -30.20 2.09 -737.90 -1.54 -31.74 16 21 C -0.27 -15.44 9.92 84.03 0.83 -14.61 16 22 H 0.05 2.95 8.05 -2.91 -0.02 2.93 16 23 C -0.09 -5.39 5.50 84.86 0.47 -4.93 16 24 N -0.98 -64.59 13.71 21.65 0.30 -64.30 16 25 Si 1.10 54.15 24.89 68.60 1.71 55.86 16 26 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 27 H -0.27 -12.42 5.95 99.48 0.59 -11.83 16 28 H -0.25 -10.96 6.22 99.48 0.62 -10.34 16 29 C 0.09 3.39 4.68 83.27 0.39 3.78 16 30 H 0.07 3.17 5.93 -2.39 -0.01 3.16 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 2.01 5.50 -2.39 -0.01 1.99 16 33 H 0.42 11.10 8.31 -92.71 -0.77 10.33 16 34 H 0.28 0.67 7.01 -2.91 -0.02 0.65 16 35 H 0.17 -0.12 6.71 -2.91 -0.02 -0.14 16 36 H 0.17 -0.60 8.06 -2.91 -0.02 -0.63 16 37 H 0.16 -0.16 8.06 -2.91 -0.02 -0.19 16 38 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.12 2.45 7.68 -2.91 -0.02 2.42 16 40 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 41 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 42 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.24 16.22 8.73 -92.71 -0.81 15.41 16 44 H 0.07 2.26 7.61 -2.39 -0.02 2.24 16 45 H 0.05 1.93 3.47 -2.39 -0.01 1.92 16 Total: -1.00 -86.61 367.56 3.04 -83.57 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.03 Total: 14.26 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 8.27 Total: 17.60 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -6.91 Total: -148.08 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.07 Total: -23.22 kcal Atomic # 14 Polarization: 54.15 SS G_CDS: 1.71 Total: 55.86 kcal Total: -86.61 3.04 -83.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969922597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.474 kcal (2) G-P(sol) polarization free energy of solvation -86.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds