Wall clock time and date at job start Wed Apr 1 2020 00:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47080 * 2 1 4 4 N 1.46499 * 109.47146 * 120.00521 * 2 1 3 5 5 C 1.34771 * 119.99836 * 274.99611 * 4 2 1 6 6 O 1.21517 * 120.00378 * 0.02562 * 5 4 2 7 7 C 1.48169 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.39220 * 119.68869 * 180.02562 * 7 5 4 9 9 C 1.38709 * 119.18965 * 180.02562 * 8 7 5 10 10 C 1.38411 * 118.55808 * 359.97438 * 9 8 7 11 11 C 1.39254 * 119.29712 * 0.02562 * 10 9 8 12 12 N 1.39826 * 119.61841 * 180.02562 * 11 10 9 13 13 C 1.37184 * 126.49230 * 180.02562 * 12 11 10 14 14 C 1.34612 * 106.83068 * 179.97438 * 13 12 11 15 15 N 1.34154 * 108.21963 * 0.22831 * 14 13 12 16 16 C 1.30486 * 109.37175 * 359.61638 * 15 14 13 17 17 N 1.31972 * 120.76569 * 0.27039 * 11 10 9 18 18 C 1.53004 * 109.46924 * 240.00202 * 2 1 3 19 19 C 1.53936 * 113.74050 * 158.73769 * 18 2 1 20 20 N 1.47807 * 86.03880 * 222.08400 * 19 18 2 21 21 C 1.36940 * 134.45943 * 204.63971 * 20 19 18 22 22 H 1.07999 * 120.00102 * 179.87126 * 21 20 19 23 23 C 1.38809 * 119.99847 * 359.87594 * 21 20 19 24 24 N 1.31622 * 120.00383 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46857 * 89.99718 * 25 23 21 27 27 H 1.48491 * 109.47372 * 209.99827 * 25 23 21 28 28 H 1.48501 * 109.46895 * 330.00536 * 25 23 21 29 29 C 1.47582 * 91.05028 * 24.55487 * 20 19 18 30 30 H 1.08996 * 109.47048 * 299.99592 * 1 2 3 31 31 H 1.08998 * 109.47411 * 59.99677 * 1 2 3 32 32 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99938 * 94.99908 * 4 2 1 34 34 H 1.07996 * 120.40548 * 0.04275 * 8 7 5 35 35 H 1.08006 * 120.72543 * 179.97438 * 9 8 7 36 36 H 1.07992 * 120.35296 * 179.97438 * 10 9 8 37 37 H 1.08003 * 126.58049 * 359.97414 * 13 12 11 38 38 H 1.08002 * 125.88716 * 179.97438 * 14 13 12 39 39 H 1.07994 * 125.72272 * 180.11906 * 16 15 14 40 40 H 1.08997 * 112.94523 * 290.33645 * 18 2 1 41 41 H 1.08997 * 113.77282 * 336.35701 * 19 18 2 42 42 H 1.09011 * 113.76853 * 107.75118 * 19 18 2 43 43 H 0.96994 * 120.00562 * 179.97438 * 24 23 21 44 44 H 1.08996 * 113.76667 * 221.15171 * 29 20 19 45 45 H 1.09001 * 113.87224 * 89.76462 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8578 1.1605 2.4119 7 6 2.6405 -0.7171 3.5669 8 6 2.7705 -0.0165 4.7629 9 6 3.2339 -0.6806 5.8891 10 6 3.5512 -2.0235 5.7815 11 6 3.3976 -2.6639 4.5545 12 7 3.7157 -4.0205 4.4384 13 6 3.6192 -4.7870 3.3048 14 6 4.0239 -6.0271 3.6371 15 7 4.3548 -6.0260 4.9372 16 6 4.1796 -4.8295 5.4274 17 7 2.9599 -2.0039 3.4988 18 6 2.0400 -0.7212 -1.2493 19 6 3.4846 -0.3520 -1.6318 20 7 2.9977 -0.3176 -3.0269 21 6 3.5873 -0.4755 -4.2527 22 1 2.9926 -0.4035 -5.1513 23 6 4.9494 -0.7282 -4.3403 24 7 5.6744 -0.8155 -3.2453 25 14 5.7537 -0.9443 -6.0125 26 1 6.2183 0.3746 -6.5124 27 1 6.9134 -1.8634 -5.8890 28 1 4.7684 -1.5156 -6.9655 29 6 1.6212 -0.0470 -2.5685 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6319 1.1524 34 1 2.5135 1.0313 4.8134 35 1 3.3446 -0.1612 6.8295 36 1 3.9148 -2.5688 6.6398 37 1 3.2830 -4.4585 2.3324 38 1 4.0700 -6.8773 2.9727 39 1 4.3672 -4.5328 6.4487 40 1 1.8527 -1.7947 -1.2264 41 1 3.8047 0.6190 -1.2540 42 1 4.2070 -1.1448 -1.4368 43 1 6.6261 -0.9925 -3.3064 44 1 0.8585 -0.5967 -3.1200 45 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970011744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:13 Heat of formation + Delta-G solvation = 133.354401 kcal Electronic energy + Delta-G solvation = -28724.143689 eV Core-core repulsion = 24745.306777 eV Total energy + Delta-G solvation = -3978.836913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64991 -40.85490 -39.40773 -38.02758 -34.98604 -34.53109 -33.37451 -32.15225 -30.73741 -30.29462 -29.53711 -27.53490 -25.59353 -24.68418 -24.48176 -23.90762 -22.20620 -21.36966 -21.07828 -20.40120 -19.55888 -18.73201 -17.59716 -16.84651 -16.59282 -16.48340 -16.15870 -15.84309 -15.11167 -14.93348 -14.81160 -14.35272 -14.15197 -13.98472 -13.85084 -13.82757 -13.63551 -13.48317 -13.05502 -12.66185 -12.44498 -12.17006 -11.69410 -11.37896 -11.30630 -11.12805 -10.93998 -10.78672 -10.66528 -10.49641 -10.42055 -10.39560 -10.05770 -9.79176 -9.77895 -9.42398 -9.20252 -8.89717 -8.79612 -8.77870 -6.87656 -5.76319 -3.08785 0.06035 0.44406 1.80437 2.02066 2.60745 2.84421 2.99626 3.39306 3.43979 3.46160 3.49156 3.66632 4.01932 4.26715 4.40544 4.44266 4.45663 4.53870 4.84946 4.97603 5.06150 5.11111 5.24346 5.26013 5.31521 5.44528 5.51719 5.53267 5.62322 5.75964 5.77719 5.88109 5.92350 5.99278 6.19336 6.32189 6.37067 6.38937 6.53509 6.61998 6.72065 6.75500 7.13701 7.22968 7.35302 7.55577 7.57486 7.66471 7.98228 8.14312 9.04759 9.71275 10.60115 11.40664 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.002908 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.888161 B = 9627.491915 C =11374.900084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.090 0.910 4 N -0.692 5.692 5 C 0.569 3.431 6 O -0.531 6.531 7 C 0.123 3.877 8 C -0.123 4.123 9 C -0.051 4.051 10 C -0.163 4.163 11 C 0.348 3.652 12 N -0.412 5.412 13 C -0.019 4.019 14 C -0.030 4.030 15 N -0.477 5.477 16 C 0.189 3.811 17 N -0.472 5.472 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.612 5.612 21 C -0.223 4.223 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.409 0.591 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.211 0.789 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -3.330 21.969 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.341 5.341 5 C 0.352 3.648 6 O -0.407 6.407 7 C -0.017 4.017 8 C -0.145 4.145 9 C -0.077 4.077 10 C -0.185 4.185 11 C 0.117 3.883 12 N -0.095 5.095 13 C -0.149 4.149 14 C -0.174 4.174 15 N -0.194 5.194 16 C -0.092 4.092 17 N -0.187 5.187 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.338 5.338 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.245 0.755 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.202 0.798 38 H 0.195 0.805 39 H 0.227 0.773 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.393 -3.612 21.317 22.850 hybrid contribution 0.562 0.592 -0.629 1.031 sum -6.831 -3.020 20.688 21.995 Atomic orbital electron populations 1.22131 0.95362 1.01927 1.02231 1.21225 0.93691 0.97656 0.83097 0.89178 1.45980 1.64454 1.14722 1.08955 1.17717 0.78421 0.86071 0.82590 1.90801 1.50702 1.14722 1.84495 1.21122 0.97354 0.88188 0.95044 1.22220 0.97866 1.02675 0.91727 1.21535 0.93889 0.92950 0.99332 1.21757 1.03506 0.96243 0.96995 1.18076 0.96262 0.83624 0.90339 1.43144 1.48729 1.06195 1.11414 1.23055 1.07518 0.91837 0.92466 1.22441 1.05121 0.97110 0.92761 1.70331 1.19754 1.19312 1.09993 1.25305 1.02730 0.85530 0.95661 1.66827 1.12174 1.09309 1.30369 1.23835 1.00996 0.99742 0.92102 1.22293 0.91349 0.98491 0.83331 1.45988 1.03260 1.82588 1.01996 1.19025 0.91448 1.41682 0.82951 0.90257 1.24781 0.96047 1.02348 0.97251 1.69815 1.06082 1.55146 1.25775 0.86133 0.79033 0.77548 0.83136 1.21637 1.21623 1.20602 1.22485 0.89706 0.96608 0.90768 0.92733 0.91162 0.92615 0.75503 0.82411 0.82766 0.83428 0.79752 0.80488 0.77267 0.89298 0.95666 0.91019 0.93674 0.93708 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.31 37.16 0.35 -1.69 16 2 C 0.15 2.23 2.38 -67.93 -0.16 2.07 16 3 H 0.09 1.55 7.42 -51.93 -0.39 1.16 16 4 N -0.69 -9.67 5.07 -54.65 -0.28 -9.95 16 5 C 0.57 8.09 7.78 -12.18 -0.09 8.00 16 6 O -0.53 -8.77 15.98 5.35 0.09 -8.69 16 7 C 0.12 1.44 6.75 -83.02 -0.56 0.88 16 8 C -0.12 -1.10 9.63 -39.04 -0.38 -1.48 16 9 C -0.05 -0.31 10.16 -39.34 -0.40 -0.71 16 10 C -0.16 -1.08 9.50 -39.14 -0.37 -1.45 16 11 C 0.35 3.45 7.51 -154.53 -1.16 2.29 16 12 N -0.41 -4.21 2.98 -63.81 -0.19 -4.40 16 13 C -0.02 -0.21 11.17 -16.44 -0.18 -0.39 16 14 C -0.03 -0.33 11.85 -17.82 -0.21 -0.54 16 15 N -0.48 -5.54 11.24 -14.46 -0.16 -5.70 16 16 C 0.19 1.73 11.90 -89.57 -1.07 0.66 16 17 N -0.47 -5.48 9.07 -8.85 -0.08 -5.56 16 18 C -0.15 -2.60 3.47 -89.69 -0.31 -2.91 16 19 C 0.17 3.98 7.08 -2.85 -0.02 3.95 16 20 N -0.61 -15.67 3.70 -177.73 -0.66 -16.33 16 21 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.50 11.39 55.49 0.63 -26.87 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.13 2.59 7.64 -2.96 -0.02 2.57 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.86 7.52 -51.93 -0.39 0.47 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.41 5.34 7.93 -40.82 -0.32 5.02 16 34 H 0.16 1.30 7.63 -52.49 -0.40 0.90 16 35 H 0.15 0.38 8.06 -52.48 -0.42 -0.04 16 36 H 0.15 0.49 6.74 -52.49 -0.35 0.13 16 37 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.21 0.98 7.03 -52.49 -0.37 0.61 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 42 H 0.07 1.85 7.17 -51.92 -0.37 1.48 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -35.44 383.03 -10.69 -46.12 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.94 Total: 3.87 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -4.85 Total: 4.48 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.74 Total: -68.80 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.44 -10.69 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970011744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.477 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds