Wall clock time and date at job start Wed Apr 1 2020 00:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47080 * 2 1 4 4 N 1.46499 * 109.47146 * 120.00521 * 2 1 3 5 5 C 1.34771 * 119.99836 * 274.99611 * 4 2 1 6 6 O 1.21517 * 120.00378 * 0.02562 * 5 4 2 7 7 C 1.48169 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.39220 * 119.68869 * 180.02562 * 7 5 4 9 9 C 1.38709 * 119.18965 * 180.02562 * 8 7 5 10 10 C 1.38411 * 118.55808 * 359.97438 * 9 8 7 11 11 C 1.39254 * 119.29712 * 0.02562 * 10 9 8 12 12 N 1.39826 * 119.61841 * 180.02562 * 11 10 9 13 13 C 1.37184 * 126.49230 * 180.02562 * 12 11 10 14 14 C 1.34612 * 106.83068 * 179.97438 * 13 12 11 15 15 N 1.34154 * 108.21963 * 0.22831 * 14 13 12 16 16 C 1.30486 * 109.37175 * 359.61638 * 15 14 13 17 17 N 1.31972 * 120.76569 * 0.27039 * 11 10 9 18 18 C 1.53004 * 109.46924 * 240.00202 * 2 1 3 19 19 C 1.53936 * 113.74050 * 158.73769 * 18 2 1 20 20 N 1.47807 * 86.03880 * 222.08400 * 19 18 2 21 21 C 1.36940 * 134.45943 * 204.63971 * 20 19 18 22 22 H 1.07999 * 120.00102 * 179.87126 * 21 20 19 23 23 C 1.38809 * 119.99847 * 359.87594 * 21 20 19 24 24 N 1.31622 * 120.00383 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00086 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46857 * 89.99718 * 25 23 21 27 27 H 1.48491 * 109.47372 * 209.99827 * 25 23 21 28 28 H 1.48501 * 109.46895 * 330.00536 * 25 23 21 29 29 C 1.47582 * 91.05028 * 24.55487 * 20 19 18 30 30 H 1.08996 * 109.47048 * 299.99592 * 1 2 3 31 31 H 1.08998 * 109.47411 * 59.99677 * 1 2 3 32 32 H 1.08998 * 109.47080 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99938 * 94.99908 * 4 2 1 34 34 H 1.07996 * 120.40548 * 0.04275 * 8 7 5 35 35 H 1.08006 * 120.72543 * 179.97438 * 9 8 7 36 36 H 1.07992 * 120.35296 * 179.97438 * 10 9 8 37 37 H 1.08003 * 126.58049 * 359.97414 * 13 12 11 38 38 H 1.08002 * 125.88716 * 179.97438 * 14 13 12 39 39 H 1.07994 * 125.72272 * 180.11906 * 16 15 14 40 40 H 1.08997 * 112.94523 * 290.33645 * 18 2 1 41 41 H 1.08997 * 113.77282 * 336.35701 * 19 18 2 42 42 H 1.09011 * 113.76853 * 107.75118 * 19 18 2 43 43 H 0.96994 * 120.00562 * 179.97438 * 24 23 21 44 44 H 1.08996 * 113.76667 * 221.15171 * 29 20 19 45 45 H 1.09001 * 113.87224 * 89.76462 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8578 1.1605 2.4119 7 6 2.6405 -0.7171 3.5669 8 6 2.7705 -0.0165 4.7629 9 6 3.2339 -0.6806 5.8891 10 6 3.5512 -2.0235 5.7815 11 6 3.3976 -2.6639 4.5545 12 7 3.7157 -4.0205 4.4384 13 6 3.6192 -4.7870 3.3048 14 6 4.0239 -6.0271 3.6371 15 7 4.3548 -6.0260 4.9372 16 6 4.1796 -4.8295 5.4274 17 7 2.9599 -2.0039 3.4988 18 6 2.0400 -0.7212 -1.2493 19 6 3.4846 -0.3520 -1.6318 20 7 2.9977 -0.3176 -3.0269 21 6 3.5873 -0.4755 -4.2527 22 1 2.9926 -0.4035 -5.1513 23 6 4.9494 -0.7282 -4.3403 24 7 5.6744 -0.8155 -3.2453 25 14 5.7537 -0.9443 -6.0125 26 1 6.2183 0.3746 -6.5124 27 1 6.9134 -1.8634 -5.8890 28 1 4.7684 -1.5156 -6.9655 29 6 1.6212 -0.0470 -2.5685 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6319 1.1524 34 1 2.5135 1.0313 4.8134 35 1 3.3446 -0.1612 6.8295 36 1 3.9148 -2.5688 6.6398 37 1 3.2830 -4.4585 2.3324 38 1 4.0700 -6.8773 2.9727 39 1 4.3672 -4.5328 6.4487 40 1 1.8527 -1.7947 -1.2264 41 1 3.8047 0.6190 -1.2540 42 1 4.2070 -1.1448 -1.4368 43 1 6.6261 -0.9925 -3.3064 44 1 0.8585 -0.5967 -3.1200 45 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970011744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:12 Heat of formation + Delta-G solvation = 111.355941 kcal Electronic energy + Delta-G solvation = -28725.097614 eV Core-core repulsion = 24745.306777 eV Total energy + Delta-G solvation = -3979.790837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.37502 -41.71434 -40.55562 -39.52364 -36.31560 -35.28903 -34.34599 -33.86723 -31.84501 -31.18575 -30.32682 -29.37505 -26.82668 -26.07748 -25.50053 -25.16685 -23.37838 -22.19641 -22.12528 -21.46674 -20.84797 -19.73663 -18.78574 -18.55937 -17.59892 -17.18022 -16.95777 -16.91136 -16.79558 -16.15179 -15.88571 -15.74119 -15.22883 -14.95653 -14.85569 -14.82194 -14.57319 -14.49697 -14.26064 -14.07027 -13.45418 -13.28938 -13.21135 -13.11545 -12.93544 -12.73646 -12.55473 -12.05819 -11.86790 -11.77307 -11.69005 -11.49916 -11.27621 -11.20922 -11.11894 -10.89813 -10.78557 -10.15928 -9.90018 -9.53353 -8.94329 -7.92246 -5.26175 -0.63199 -0.20786 1.09337 1.33113 1.43540 1.45750 1.54484 1.67783 1.98181 2.07285 2.45699 2.70556 2.86854 3.28323 3.35421 3.44950 3.64120 3.66605 3.78010 3.84924 3.90433 3.93249 4.22808 4.26007 4.35932 4.44311 4.46007 4.55497 4.58515 4.71699 4.79457 4.81408 4.83325 4.94064 4.97832 5.04537 5.09808 5.23006 5.28844 5.30594 5.40743 5.52080 5.62016 5.63166 5.91134 6.02672 6.32030 6.57724 6.89308 6.91793 7.04872 7.59124 8.54577 9.24572 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.002908 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.888161 B = 9627.491915 C =11374.900084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.068 0.932 4 N -0.693 5.693 5 C 0.566 3.434 6 O -0.561 6.561 7 C 0.091 3.909 8 C -0.122 4.122 9 C -0.035 4.035 10 C -0.142 4.142 11 C 0.324 3.676 12 N -0.416 5.416 13 C -0.041 4.041 14 C -0.040 4.040 15 N -0.513 5.513 16 C 0.202 3.798 17 N -0.496 5.496 18 C -0.111 4.111 19 C 0.168 3.832 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.086 0.914 23 C -0.069 4.069 24 N -0.955 5.955 25 Si 0.979 3.021 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.265 1.265 29 C 0.132 3.868 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.413 0.587 34 H 0.162 0.838 35 H 0.202 0.798 36 H 0.191 0.809 37 H 0.181 0.819 38 H 0.188 0.812 39 H 0.256 0.744 40 H 0.100 0.900 41 H 0.004 0.996 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -3.480 24.193 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.086 0.914 4 N -0.342 5.342 5 C 0.352 3.648 6 O -0.440 6.440 7 C -0.047 4.047 8 C -0.144 4.144 9 C -0.060 4.060 10 C -0.164 4.164 11 C 0.093 3.907 12 N -0.099 5.099 13 C -0.171 4.171 14 C -0.184 4.184 15 N -0.230 5.230 16 C -0.079 4.079 17 N -0.210 5.210 18 C -0.130 4.130 19 C 0.042 3.958 20 N -0.371 5.371 21 C -0.363 4.363 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.215 1.215 27 H -0.221 1.221 28 H -0.189 1.189 29 C 0.007 3.993 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.179 0.821 35 H 0.219 0.781 36 H 0.208 0.792 37 H 0.198 0.802 38 H 0.205 0.795 39 H 0.272 0.728 40 H 0.118 0.882 41 H 0.022 0.978 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.388 -3.759 23.533 25.265 hybrid contribution 0.854 0.664 -1.214 1.626 sum -7.533 -3.095 22.319 23.759 Atomic orbital electron populations 1.22046 0.92868 1.03062 1.02691 1.20976 0.95406 0.95981 0.82456 0.91421 1.45932 1.64650 1.14835 1.08812 1.18144 0.77606 0.85833 0.83260 1.90765 1.52150 1.15946 1.85163 1.20779 1.00294 0.88722 0.94904 1.22439 0.97292 1.02928 0.91712 1.22051 0.91560 0.92615 0.99824 1.22286 1.00957 0.96478 0.96663 1.18466 0.97348 0.83537 0.91341 1.43261 1.48803 1.06496 1.11343 1.23109 1.08635 0.92277 0.93086 1.22693 1.05022 0.97557 0.93126 1.70333 1.21485 1.20931 1.10272 1.26198 1.00275 0.84581 0.96819 1.66606 1.12988 1.09463 1.31994 1.23441 0.96344 1.00404 0.92844 1.22155 0.93937 0.96356 0.83308 1.46419 1.05897 1.82874 1.01874 1.19473 0.91961 1.40497 0.84416 0.89598 1.25656 0.96794 1.02929 1.00825 1.70024 1.05794 1.56754 1.27878 0.85068 0.77900 0.77191 0.79130 1.21509 1.22086 1.18936 1.22678 0.87607 0.97683 0.91295 0.92743 0.90216 0.91109 0.75069 0.82071 0.78126 0.79179 0.80164 0.79542 0.72845 0.88167 0.97794 0.94386 0.94410 0.91610 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.31 71.98 0.67 -2.96 16 2 C 0.16 4.78 2.38 44.99 0.11 4.89 16 3 H 0.07 2.40 7.42 -2.39 -0.02 2.39 16 4 N -0.69 -19.96 5.07 -445.10 -2.26 -22.22 16 5 C 0.57 16.58 7.78 86.88 0.68 17.26 16 6 O -0.56 -19.09 15.98 -3.77 -0.06 -19.15 16 7 C 0.09 2.14 6.75 41.88 0.28 2.42 16 8 C -0.12 -1.97 9.63 22.62 0.22 -1.75 16 9 C -0.03 -0.27 10.16 22.42 0.23 -0.05 16 10 C -0.14 -1.30 9.50 22.56 0.21 -1.08 16 11 C 0.32 5.88 7.51 132.94 1.00 6.88 16 12 N -0.42 -7.99 2.98 -355.80 -1.06 -9.05 16 13 C -0.04 -0.92 11.17 83.02 0.93 0.01 16 14 C -0.04 -0.89 11.85 83.51 0.99 0.10 16 15 N -0.51 -11.41 11.24 -199.67 -2.24 -13.65 16 16 C 0.20 3.21 11.90 179.98 2.14 5.35 16 17 N -0.50 -11.45 9.07 -181.91 -1.65 -13.10 16 18 C -0.11 -3.95 3.47 -10.13 -0.04 -3.98 16 19 C 0.17 8.20 7.08 86.44 0.61 8.81 16 20 N -0.64 -33.58 3.70 -716.20 -2.65 -36.23 16 21 C -0.24 -13.43 10.70 84.03 0.90 -12.53 16 22 H 0.09 4.65 7.83 -2.91 -0.02 4.62 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 24 N -0.96 -59.25 11.39 21.65 0.25 -59.01 16 25 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 29 C 0.13 5.16 7.64 86.49 0.66 5.82 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.80 7.52 -2.39 -0.02 1.78 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.41 11.24 7.93 -92.70 -0.74 10.50 16 34 H 0.16 2.43 7.63 -2.91 -0.02 2.41 16 35 H 0.20 -0.26 8.06 -2.91 -0.02 -0.29 16 36 H 0.19 0.04 6.74 -2.91 -0.02 0.03 16 37 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.19 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.26 1.17 7.03 -2.91 -0.02 1.15 16 40 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 42 H 0.04 2.09 7.17 -2.38 -0.02 2.07 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -81.62 383.03 2.70 -78.93 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.29 Total: 19.28 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 10.06 Total: 25.61 kcal Atomic # 7 Polarization: -143.63 SS G_CDS: -9.62 Total: -153.25 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.06 Total: -19.15 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -81.62 2.70 -78.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970011744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.283 kcal (2) G-P(sol) polarization free energy of solvation -81.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds