Wall clock time and date at job start Wed Apr 1 2020 00:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21515 * 120.00247 * 0.02562 * 5 4 2 7 7 C 1.48165 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.39223 * 119.68487 * 180.02562 * 7 5 4 9 9 C 1.38712 * 119.19150 * 180.02562 * 8 7 5 10 10 C 1.38409 * 118.55291 * 359.97438 * 9 8 7 11 11 C 1.39261 * 119.30422 * 0.02562 * 10 9 8 12 12 N 1.39820 * 119.62112 * 179.97438 * 11 10 9 13 13 C 1.37178 * 126.48976 * 184.71285 * 12 11 10 14 14 C 1.34616 * 106.82987 * 179.90149 * 13 12 11 15 15 N 1.34154 * 108.21552 * 0.36530 * 14 13 12 16 16 C 1.30476 * 109.37238 * 359.76932 * 15 14 13 17 17 N 1.31975 * 120.75806 * 359.72757 * 11 10 9 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.08003 * 120.40336 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.72551 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.34673 * 180.02562 * 10 9 8 37 37 H 1.08010 * 126.58475 * 0.02562 * 13 12 11 38 38 H 1.07999 * 125.88837 * 180.13711 * 14 13 12 39 39 H 1.08007 * 125.71688 * 179.97438 * 16 15 14 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1609 -2.4116 7 6 2.6416 -0.7166 -3.5666 8 6 2.7725 -0.0156 -4.7624 9 6 3.2359 -0.6797 -5.8886 10 6 3.5534 -2.0226 -5.7810 11 6 3.3989 -2.6633 -4.5543 12 7 3.7171 -4.0199 -4.4383 13 6 3.5352 -4.8086 -3.3308 14 6 3.9726 -6.0402 -3.6533 15 7 4.4181 -6.0091 -4.9183 16 6 4.2708 -4.8053 -5.3995 17 7 2.9602 -2.0036 -3.4988 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 2.5164 1.0324 -4.8125 35 1 3.3474 -0.1600 -6.8288 36 1 3.9171 -2.5678 -6.6395 37 1 3.1189 -4.5011 -2.3828 38 1 3.9692 -6.9034 -3.0042 39 1 4.5434 -4.4864 -6.3948 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970011746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:15 Heat of formation + Delta-G solvation = 151.678350 kcal Electronic energy + Delta-G solvation = -29320.648875 eV Core-core repulsion = 25342.606548 eV Total energy + Delta-G solvation = -3978.042327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.72123 -40.93491 -39.78248 -38.60805 -34.87373 -34.58173 -33.37004 -32.38598 -30.72229 -30.08044 -29.47770 -28.02822 -25.47509 -25.45855 -24.55455 -23.86973 -22.12578 -21.43722 -21.08885 -20.40230 -19.48706 -18.69046 -17.75204 -17.44521 -16.66330 -16.53451 -16.22820 -15.80733 -15.33363 -15.31310 -14.99954 -14.70148 -14.27919 -14.10774 -13.96138 -13.81169 -13.76961 -13.61348 -13.19290 -12.74684 -12.55017 -11.98282 -11.73474 -11.42024 -11.23589 -11.18735 -10.84210 -10.81374 -10.61477 -10.55323 -10.48570 -10.32969 -10.12040 -9.95435 -9.28410 -9.23487 -9.11175 -8.94029 -8.87782 -8.84334 -7.11868 -6.31007 -3.23988 -0.00190 0.37795 1.73572 1.95111 2.54854 2.77527 2.93942 3.35570 3.40188 3.42838 3.60515 3.61168 3.95777 4.20500 4.34171 4.38734 4.47485 4.56965 4.73480 4.80089 4.91163 4.97091 5.03522 5.10154 5.24011 5.37392 5.42807 5.47842 5.64535 5.70983 5.78279 5.83743 5.97510 6.14089 6.19988 6.25537 6.31765 6.34267 6.38073 6.49263 6.65370 6.73026 6.85598 7.07473 7.10648 7.21909 7.52961 7.59822 8.09727 8.23150 8.96700 9.49244 10.36170 11.19859 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.003351 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.850693 B = 8352.609993 C = 9895.359164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.169 3.831 3 H 0.087 0.913 4 N -0.697 5.697 5 C 0.568 3.432 6 O -0.528 6.528 7 C 0.122 3.878 8 C -0.123 4.123 9 C -0.051 4.051 10 C -0.162 4.162 11 C 0.347 3.653 12 N -0.412 5.412 13 C -0.022 4.022 14 C -0.029 4.029 15 N -0.477 5.477 16 C 0.190 3.810 17 N -0.474 5.474 18 C -0.146 4.146 19 C 0.132 3.868 20 N -0.623 5.623 21 C -0.300 4.300 22 H 0.083 0.917 23 C -0.023 4.023 24 N -0.935 5.935 25 Si 1.067 2.933 26 H -0.297 1.297 27 H -0.292 1.292 28 H -0.288 1.288 29 C 0.098 3.902 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.407 0.593 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.211 0.789 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.307 -0.342 -20.358 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.066 3.934 3 H 0.105 0.895 4 N -0.346 5.346 5 C 0.351 3.649 6 O -0.405 6.405 7 C -0.017 4.017 8 C -0.144 4.144 9 C -0.077 4.077 10 C -0.185 4.185 11 C 0.116 3.884 12 N -0.095 5.095 13 C -0.151 4.151 14 C -0.173 4.173 15 N -0.194 5.194 16 C -0.091 4.091 17 N -0.189 5.189 18 C -0.166 4.166 19 C 0.005 3.995 20 N -0.352 5.352 21 C -0.426 4.426 22 H 0.100 0.900 23 C -0.222 4.222 24 N -0.577 5.577 25 Si 0.901 3.099 26 H -0.224 1.224 27 H -0.220 1.220 28 H -0.215 1.215 29 C -0.028 4.028 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.243 0.757 34 H 0.176 0.824 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.202 0.798 38 H 0.195 0.805 39 H 0.228 0.772 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.519 -2.005 -20.330 26.272 hybrid contribution 0.416 1.936 0.371 2.014 sum 16.935 -0.069 -19.959 26.176 Atomic orbital electron populations 1.22235 0.92913 1.03490 1.02252 1.20737 0.95693 0.95782 0.81152 0.89492 1.46061 1.64551 1.14654 1.09336 1.17694 0.78544 0.86126 0.82492 1.90809 1.50527 1.14808 1.84314 1.21130 0.97314 0.88138 0.95147 1.22232 0.97711 1.02771 0.91696 1.21545 0.93840 0.92971 0.99303 1.21768 1.03535 0.96252 0.96895 1.18076 0.96334 0.83613 0.90336 1.43144 1.46604 1.06210 1.13535 1.23050 1.07339 0.91497 0.93213 1.22446 1.04082 0.97242 0.93576 1.70334 1.20138 1.18562 1.10329 1.25317 1.01506 0.86058 0.96250 1.66824 1.12267 1.09239 1.30547 1.23248 0.98465 0.99711 0.95213 1.22282 0.88391 0.96191 0.92635 1.46067 1.05052 1.20577 1.63461 1.20075 0.83866 1.00530 1.38120 0.89971 1.25645 0.94869 1.00658 1.01036 1.70913 1.19216 1.31641 1.35930 0.83770 0.74470 0.76238 0.75467 1.22398 1.22038 1.21461 1.22868 0.92218 0.93124 0.94586 0.91951 0.88720 0.94438 0.75732 0.82366 0.82714 0.83385 0.79815 0.80463 0.77234 0.90319 0.93423 0.94127 0.92901 0.93749 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.06 37.16 0.30 -2.63 16 2 C 0.17 2.74 2.76 -67.93 -0.19 2.56 16 3 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.70 -9.96 5.07 -54.65 -0.28 -10.24 16 5 C 0.57 8.10 7.78 -12.18 -0.09 8.01 16 6 O -0.53 -8.81 15.98 5.35 0.09 -8.72 16 7 C 0.12 1.41 6.75 -83.02 -0.56 0.85 16 8 C -0.12 -1.06 9.63 -39.04 -0.38 -1.43 16 9 C -0.05 -0.29 10.16 -39.34 -0.40 -0.68 16 10 C -0.16 -1.00 9.51 -39.14 -0.37 -1.37 16 11 C 0.35 3.27 7.50 -154.53 -1.16 2.11 16 12 N -0.41 -3.97 2.98 -63.81 -0.19 -4.16 16 13 C -0.02 -0.22 11.17 -16.44 -0.18 -0.40 16 14 C -0.03 -0.30 11.85 -17.82 -0.21 -0.51 16 15 N -0.48 -5.25 11.24 -14.46 -0.16 -5.41 16 16 C 0.19 1.62 11.89 -89.59 -1.07 0.56 16 17 N -0.47 -5.31 9.07 -8.85 -0.08 -5.39 16 18 C -0.15 -2.35 4.25 -89.97 -0.38 -2.73 16 19 C 0.13 2.43 7.86 -8.51 -0.07 2.36 16 20 N -0.62 -14.28 2.09 -184.59 -0.39 -14.67 16 21 C -0.30 -8.23 9.92 -15.06 -0.15 -8.38 16 22 H 0.08 2.40 8.05 -52.49 -0.42 1.98 16 23 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 24 N -0.93 -29.13 13.71 55.49 0.76 -28.37 16 25 Si 1.07 26.30 24.89 -169.99 -4.23 22.07 16 26 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 27 H -0.29 -6.74 5.95 56.52 0.34 -6.41 16 28 H -0.29 -6.60 6.22 56.52 0.35 -6.25 16 29 C 0.10 1.92 4.68 -8.36 -0.04 1.88 16 30 H 0.06 1.33 5.50 -51.93 -0.29 1.05 16 31 H 0.09 2.06 5.93 -51.93 -0.31 1.75 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.41 5.34 7.93 -40.82 -0.32 5.01 16 34 H 0.16 1.26 7.63 -52.48 -0.40 0.86 16 35 H 0.16 0.33 8.06 -52.49 -0.42 -0.10 16 36 H 0.15 0.42 6.77 -52.48 -0.36 0.06 16 37 H 0.18 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.18 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.21 0.87 7.06 -52.48 -0.37 0.50 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 42 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 43 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16 44 H 0.04 0.86 7.61 -51.93 -0.40 0.47 16 45 H 0.06 1.13 3.47 -51.93 -0.18 0.95 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -34.94 366.53 -9.66 -44.60 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.66 Total: 5.36 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -5.04 Total: -0.59 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -0.33 Total: -68.24 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.23 Total: 22.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.94 -9.66 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970011746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.279 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds