Wall clock time and date at job start Wed Apr 1 2020 00:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21515 * 120.00247 * 0.02562 * 5 4 2 7 7 C 1.48165 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.39223 * 119.68487 * 180.02562 * 7 5 4 9 9 C 1.38712 * 119.19150 * 180.02562 * 8 7 5 10 10 C 1.38409 * 118.55291 * 359.97438 * 9 8 7 11 11 C 1.39261 * 119.30422 * 0.02562 * 10 9 8 12 12 N 1.39820 * 119.62112 * 179.97438 * 11 10 9 13 13 C 1.37178 * 126.48976 * 184.71285 * 12 11 10 14 14 C 1.34616 * 106.82987 * 179.90149 * 13 12 11 15 15 N 1.34154 * 108.21552 * 0.36530 * 14 13 12 16 16 C 1.30476 * 109.37238 * 359.76932 * 15 14 13 17 17 N 1.31975 * 120.75806 * 359.72757 * 11 10 9 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.08003 * 120.40336 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.72551 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.34673 * 180.02562 * 10 9 8 37 37 H 1.08010 * 126.58475 * 0.02562 * 13 12 11 38 38 H 1.07999 * 125.88837 * 180.13711 * 14 13 12 39 39 H 1.08007 * 125.71688 * 179.97438 * 16 15 14 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1609 -2.4116 7 6 2.6416 -0.7166 -3.5666 8 6 2.7725 -0.0156 -4.7624 9 6 3.2359 -0.6797 -5.8886 10 6 3.5534 -2.0226 -5.7810 11 6 3.3989 -2.6633 -4.5543 12 7 3.7171 -4.0199 -4.4383 13 6 3.5352 -4.8086 -3.3308 14 6 3.9726 -6.0402 -3.6533 15 7 4.4181 -6.0091 -4.9183 16 6 4.2708 -4.8053 -5.3995 17 7 2.9602 -2.0036 -3.4988 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 2.5164 1.0324 -4.8125 35 1 3.3474 -0.1600 -6.8288 36 1 3.9171 -2.5678 -6.6395 37 1 3.1189 -4.5011 -2.3828 38 1 3.9692 -6.9034 -3.0042 39 1 4.5434 -4.4864 -6.3948 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970011746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:15 Heat of formation + Delta-G solvation = 129.028230 kcal Electronic energy + Delta-G solvation = -29321.631058 eV Core-core repulsion = 25342.606548 eV Total energy + Delta-G solvation = -3979.024509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.37106 -41.81876 -41.01724 -39.81160 -36.14683 -35.29216 -34.55002 -33.94795 -31.64775 -31.11025 -30.30781 -29.83435 -27.03578 -26.43440 -25.35388 -25.15550 -23.29656 -22.31424 -22.11654 -21.38385 -20.71242 -19.83236 -19.30658 -18.63776 -17.55952 -17.21039 -17.01807 -16.93339 -16.79328 -16.62262 -16.11401 -15.78832 -15.49363 -15.13910 -15.06531 -14.89557 -14.67192 -14.55238 -14.25989 -14.01337 -13.57742 -13.38685 -13.21393 -13.08030 -12.98602 -12.54170 -12.22485 -12.07512 -11.86536 -11.78679 -11.67772 -11.23186 -11.19747 -11.12774 -11.02571 -10.85935 -10.80396 -10.22700 -9.90764 -9.52738 -9.09711 -8.57351 -5.40925 -0.64269 -0.21819 1.09291 1.32677 1.35411 1.45632 1.64022 1.65713 1.92020 2.08545 2.54781 2.68882 2.84775 3.04320 3.26313 3.44270 3.48036 3.67732 3.68378 3.76175 3.84085 3.92822 4.18723 4.22263 4.35678 4.39108 4.45865 4.46938 4.59273 4.64494 4.68409 4.77281 4.81711 4.84927 4.92644 4.95696 4.98976 5.08958 5.25409 5.27521 5.29986 5.42578 5.55480 5.64337 6.00044 6.02630 6.30131 6.56246 6.74963 6.93127 7.02217 7.38016 8.33451 8.95918 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.003351 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.850693 B = 8352.609993 C = 9895.359164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.178 3.822 3 H 0.090 0.910 4 N -0.694 5.694 5 C 0.568 3.432 6 O -0.560 6.560 7 C 0.093 3.907 8 C -0.122 4.122 9 C -0.035 4.035 10 C -0.142 4.142 11 C 0.326 3.674 12 N -0.416 5.416 13 C -0.042 4.042 14 C -0.040 4.040 15 N -0.514 5.514 16 C 0.202 3.798 17 N -0.494 5.494 18 C -0.115 4.115 19 C 0.128 3.872 20 N -0.652 5.652 21 C -0.271 4.271 22 H 0.049 0.951 23 C -0.085 4.085 24 N -0.978 5.978 25 Si 1.103 2.897 26 H -0.313 1.313 27 H -0.274 1.274 28 H -0.257 1.257 29 C 0.090 3.910 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.414 0.586 34 H 0.160 0.840 35 H 0.200 0.800 36 H 0.191 0.809 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.254 0.746 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.245 0.755 44 H 0.061 0.939 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.955 -0.829 -23.955 31.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.074 3.926 3 H 0.108 0.892 4 N -0.344 5.344 5 C 0.353 3.647 6 O -0.439 6.439 7 C -0.046 4.046 8 C -0.143 4.143 9 C -0.060 4.060 10 C -0.163 4.163 11 C 0.095 3.905 12 N -0.099 5.099 13 C -0.171 4.171 14 C -0.184 4.184 15 N -0.231 5.231 16 C -0.079 4.079 17 N -0.209 5.209 18 C -0.135 4.135 19 C 0.003 3.997 20 N -0.381 5.381 21 C -0.399 4.399 22 H 0.067 0.933 23 C -0.277 4.277 24 N -0.625 5.625 25 Si 0.931 3.069 26 H -0.242 1.242 27 H -0.201 1.201 28 H -0.182 1.182 29 C -0.034 4.034 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.251 0.749 34 H 0.178 0.822 35 H 0.218 0.782 36 H 0.208 0.792 37 H 0.201 0.799 38 H 0.205 0.795 39 H 0.270 0.730 40 H 0.140 0.860 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.243 -2.471 -23.932 31.442 hybrid contribution -0.638 2.216 1.385 2.690 sum 19.605 -0.256 -22.546 29.879 Atomic orbital electron populations 1.22045 0.95700 1.01384 1.00559 1.20475 0.93229 0.96441 0.82442 0.89203 1.45911 1.64641 1.14924 1.08941 1.18160 0.77540 0.85867 0.83134 1.90781 1.51916 1.16218 1.84957 1.20709 1.00339 0.88717 0.94800 1.22434 0.97182 1.02981 0.91740 1.22040 0.91580 0.92689 0.99735 1.22293 1.00964 0.96429 0.96639 1.18437 0.97280 0.83540 0.91256 1.43258 1.46714 1.06436 1.13519 1.23143 1.08224 0.91858 0.93877 1.22708 1.04019 0.97774 0.93848 1.70336 1.21768 1.20179 1.10812 1.26179 0.99340 0.85165 0.97206 1.66598 1.13000 1.09223 1.32117 1.23034 1.00079 0.96840 0.93517 1.22530 0.86562 0.95939 0.94700 1.46115 1.04910 1.23048 1.64064 1.19864 0.86324 0.98653 1.35044 0.93349 1.26841 0.94664 1.03808 1.02363 1.71015 1.21104 1.31601 1.38736 0.83358 0.74901 0.72894 0.75760 1.24186 1.20095 1.18178 1.23082 0.92207 0.93991 0.94135 0.94090 0.91665 0.94854 0.74894 0.82190 0.78250 0.79218 0.79879 0.79484 0.72982 0.85975 0.93376 0.91921 0.94594 0.92143 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 8.06 71.98 0.58 -4.88 16 2 C 0.18 5.56 2.76 44.99 0.12 5.68 16 3 H 0.09 2.82 7.58 -2.39 -0.02 2.81 16 4 N -0.69 -18.95 5.07 -445.11 -2.26 -21.21 16 5 C 0.57 15.69 7.78 86.88 0.68 16.37 16 6 O -0.56 -18.49 15.98 -3.76 -0.06 -18.55 16 7 C 0.09 1.97 6.75 41.88 0.28 2.26 16 8 C -0.12 -1.76 9.63 22.62 0.22 -1.54 16 9 C -0.03 -0.22 10.16 22.42 0.23 0.01 16 10 C -0.14 -1.02 9.51 22.56 0.21 -0.81 16 11 C 0.33 5.13 7.50 132.94 1.00 6.13 16 12 N -0.42 -6.93 2.98 -355.80 -1.06 -8.00 16 13 C -0.04 -0.80 11.17 83.03 0.93 0.13 16 14 C -0.04 -0.77 11.85 83.51 0.99 0.22 16 15 N -0.51 -10.30 11.24 -199.68 -2.24 -12.55 16 16 C 0.20 2.77 11.89 179.99 2.14 4.91 16 17 N -0.49 -10.14 9.07 -181.91 -1.65 -11.79 16 18 C -0.12 -3.38 4.25 -10.37 -0.04 -3.43 16 19 C 0.13 4.48 7.86 83.18 0.65 5.13 16 20 N -0.65 -29.64 2.09 -737.90 -1.54 -31.18 16 21 C -0.27 -15.36 9.92 84.03 0.83 -14.53 16 22 H 0.05 3.00 8.05 -2.91 -0.02 2.98 16 23 C -0.09 -5.09 5.50 84.86 0.47 -4.62 16 24 N -0.98 -63.94 13.71 21.65 0.30 -63.65 16 25 Si 1.10 53.72 24.89 68.60 1.71 55.43 16 26 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 27 H -0.27 -12.33 5.95 99.48 0.59 -11.74 16 28 H -0.26 -11.06 6.22 99.48 0.62 -10.44 16 29 C 0.09 3.35 4.68 83.27 0.39 3.74 16 30 H 0.04 1.76 5.50 -2.39 -0.01 1.75 16 31 H 0.06 2.93 5.93 -2.39 -0.01 2.91 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.41 10.18 7.93 -92.71 -0.74 9.45 16 34 H 0.16 2.20 7.63 -2.91 -0.02 2.18 16 35 H 0.20 -0.52 8.06 -2.91 -0.02 -0.54 16 36 H 0.19 -0.28 6.77 -2.91 -0.02 -0.30 16 37 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 38 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.25 0.71 7.06 -2.91 -0.02 0.69 16 40 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 41 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 42 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.25 16.10 8.73 -92.71 -0.81 15.30 16 44 H 0.06 2.12 7.61 -2.39 -0.02 2.10 16 45 H 0.05 1.86 3.47 -2.39 -0.01 1.86 16 Total: -1.00 -82.21 366.53 2.94 -79.27 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.07 Total: 17.44 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 9.68 Total: 14.77 kcal Atomic # 7 Polarization: -139.91 SS G_CDS: -8.45 Total: -148.37 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 1.71 Total: 55.43 kcal Total: -82.21 2.94 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970011746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.303 kcal (2) G-P(sol) polarization free energy of solvation -82.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds