Wall clock time and date at job start Wed Apr 1 2020 00:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47110 * 2 1 4 4 N 1.46504 * 109.47123 * 120.00072 * 2 1 3 5 5 C 1.34774 * 119.99857 * 274.99939 * 4 2 1 6 6 O 1.21600 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.47510 * 119.99734 * 179.97438 * 5 4 2 8 8 C 1.36623 * 125.76407 * 180.30974 * 7 5 4 9 9 N 1.35079 * 106.78917 * 180.13691 * 8 7 5 10 10 C 1.40233 * 126.60747 * 179.84898 * 9 8 7 11 11 C 1.38835 * 120.06140 * 179.71361 * 10 9 8 12 12 C 1.38118 * 119.93218 * 179.97438 * 11 10 9 13 13 C 1.38277 * 120.06665 * 359.97438 * 12 11 10 14 14 C 1.38280 * 120.13319 * 359.97438 * 13 12 11 15 15 C 1.38125 * 120.06569 * 0.02562 * 14 13 12 16 16 N 1.40210 * 106.77903 * 359.58883 * 9 8 7 17 17 N 1.28758 * 108.38201 * 0.26333 * 16 9 8 18 18 C 1.53000 * 109.47391 * 240.00246 * 2 1 3 19 19 C 1.53947 * 113.74336 * 158.73939 * 18 2 1 20 20 N 1.47817 * 86.03697 * 222.08496 * 19 18 2 21 21 C 1.36927 * 134.45519 * 204.64850 * 20 19 18 22 22 H 1.08002 * 119.99855 * 173.34775 * 21 20 19 23 23 C 1.38818 * 120.00259 * 353.34322 * 21 20 19 24 24 N 1.31618 * 119.99762 * 5.06646 * 23 21 20 25 25 Si 1.86793 * 120.00031 * 185.06666 * 23 21 20 26 26 H 1.48506 * 109.47233 * 94.98811 * 25 23 21 27 27 H 1.48499 * 109.47180 * 214.98523 * 25 23 21 28 28 H 1.48497 * 109.47469 * 334.98461 * 25 23 21 29 29 C 1.47581 * 91.04910 * 24.54858 * 20 19 18 30 30 H 1.09008 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47380 * 299.99886 * 1 2 3 32 32 H 1.09000 * 109.47162 * 60.00169 * 1 2 3 33 33 H 0.96994 * 119.99793 * 95.00220 * 4 2 1 34 34 H 1.08001 * 126.60743 * 0.02562 * 8 7 5 35 35 H 1.07997 * 120.03279 * 359.95591 * 11 10 9 36 36 H 1.07999 * 119.96716 * 180.02562 * 12 11 10 37 37 H 1.07999 * 119.93558 * 179.72825 * 13 12 11 38 38 H 1.07997 * 119.96821 * 179.97438 * 14 13 12 39 39 H 1.07993 * 120.03636 * 180.02562 * 15 14 13 40 40 H 1.09004 * 112.94411 * 290.33730 * 18 2 1 41 41 H 1.08999 * 113.76926 * 336.35076 * 19 18 2 42 42 H 1.09001 * 113.76677 * 107.74304 * 19 18 2 43 43 H 0.96998 * 119.99898 * 180.02562 * 24 23 21 44 44 H 1.09006 * 113.76717 * 221.15053 * 29 20 19 45 45 H 1.08999 * 113.87278 * 89.76985 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1615 2.4118 7 6 2.6382 -0.7138 3.5616 8 6 2.8076 -0.1514 4.7952 9 7 3.2741 -1.1250 5.6071 10 6 3.5941 -0.9981 6.9665 11 6 4.0604 -2.0963 7.6766 12 6 4.3753 -1.9682 9.0153 13 6 4.2272 -0.7477 9.6482 14 6 3.7640 0.3480 8.9433 15 6 3.4474 0.2262 7.6044 16 7 3.3708 -2.2882 4.8303 17 7 2.9888 -2.0095 3.6326 18 6 2.0401 -0.7212 -1.2493 19 6 3.4848 -0.3519 -1.6317 20 7 2.9979 -0.3175 -3.0269 21 6 3.5875 -0.4755 -4.2526 22 1 2.9790 -0.5088 -5.1442 23 6 4.9673 -0.5929 -4.3491 24 7 5.7006 -0.6526 -3.2578 25 14 5.7833 -0.6661 -6.0278 26 1 6.2266 0.6952 -6.4226 27 1 6.9589 -1.5714 -5.9677 28 1 4.8133 -1.1802 -7.0278 29 6 1.6214 -0.0471 -2.5684 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1526 34 1 2.6088 0.8744 5.0681 35 1 4.1764 -3.0497 7.1828 36 1 4.7385 -2.8220 9.5681 37 1 4.4699 -0.6511 10.6961 38 1 3.6489 1.2999 9.4404 39 1 3.0861 1.0824 7.0542 40 1 1.8528 -1.7948 -1.2264 41 1 3.8048 0.6192 -1.2539 42 1 4.2071 -1.1446 -1.4366 43 1 6.6648 -0.7342 -3.3252 44 1 0.8587 -0.5968 -3.1200 45 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970025701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:32 Heat of formation + Delta-G solvation = 149.293067 kcal Electronic energy + Delta-G solvation = -27990.112614 eV Core-core repulsion = 24011.966854 eV Total energy + Delta-G solvation = -3978.145760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.68347 -39.87806 -39.42435 -37.94134 -35.06889 -34.73089 -32.21251 -31.93598 -31.23279 -30.61297 -29.67839 -27.46819 -25.22404 -24.63289 -24.37705 -23.80052 -22.71494 -21.85076 -21.09960 -20.28111 -19.48876 -18.61625 -17.20007 -16.73759 -16.44210 -16.40155 -16.12092 -15.60696 -15.32584 -14.84736 -14.68059 -14.53965 -14.26407 -14.08902 -13.80006 -13.55662 -13.43874 -12.98886 -12.64725 -12.42491 -12.31664 -12.09157 -11.76068 -11.62775 -11.57595 -11.52978 -11.29452 -11.24152 -10.86964 -10.69853 -10.30748 -10.11168 -9.80061 -9.78301 -9.71172 -9.66743 -9.35638 -9.00483 -8.75566 -8.73745 -6.80941 -5.73016 -3.04165 0.02257 0.68560 1.34594 1.55856 1.60099 3.12914 3.20128 3.31445 3.42534 3.47340 3.49632 3.89513 3.97415 4.21695 4.42822 4.46001 4.49841 4.60154 4.70826 4.73414 4.93836 5.02481 5.13894 5.31097 5.33860 5.34903 5.46464 5.58148 5.68165 5.71001 5.77291 5.84782 5.86319 5.98462 6.00613 6.08249 6.28413 6.38452 6.40310 6.45441 6.62958 6.71112 6.83885 7.30049 7.41454 7.51384 7.62660 7.77647 8.02844 8.29072 9.09316 9.75678 10.66298 11.44647 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.002018 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.247460 B =13872.968761 C =14808.535940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.090 0.910 4 N -0.698 5.698 5 C 0.603 3.397 6 O -0.541 6.541 7 C -0.086 4.086 8 C 0.091 3.909 9 N -0.314 5.314 10 C 0.136 3.864 11 C -0.105 4.105 12 C -0.098 4.098 13 C -0.116 4.116 14 C -0.096 4.096 15 C -0.125 4.125 16 N -0.056 5.056 17 N -0.191 5.191 18 C -0.148 4.148 19 C 0.173 3.827 20 N -0.613 5.613 21 C -0.223 4.223 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.130 3.870 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.408 0.592 34 H 0.208 0.792 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.068 0.932 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 -0.134 28.529 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.347 5.347 5 C 0.387 3.613 6 O -0.418 6.418 7 C -0.224 4.224 8 C -0.063 4.063 9 N -0.093 5.093 10 C 0.044 3.956 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.135 4.135 14 C -0.114 4.114 15 C -0.146 4.146 16 N -0.035 5.035 17 N -0.065 5.065 18 C -0.168 4.168 19 C 0.048 3.952 20 N -0.339 5.339 21 C -0.351 4.351 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.565 5.565 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.224 0.776 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.515 -0.831 28.210 28.965 hybrid contribution 0.514 0.663 -0.809 1.165 sum -6.001 -0.168 27.401 28.051 Atomic orbital electron populations 1.22138 0.95482 1.01913 1.02150 1.21176 0.93600 0.97608 0.83005 0.89191 1.45901 1.65285 1.14610 1.08950 1.16664 0.77529 0.85584 0.81560 1.90802 1.51568 1.14714 1.84716 1.21619 1.13414 0.91303 0.96084 1.23370 0.96374 0.96711 0.89808 1.47654 1.43706 1.09418 1.08503 1.17649 1.02723 0.96106 0.79097 1.21017 0.98724 0.98143 0.94585 1.21141 0.98672 0.98286 0.93566 1.21372 0.98728 0.92752 1.00630 1.21058 0.97884 0.99557 0.92929 1.21001 1.02221 0.95495 0.95895 1.82082 1.21874 1.03578 0.95981 1.74687 1.07548 1.13134 1.11166 1.23852 1.00974 0.99799 0.92158 1.22239 0.91254 0.98465 0.83238 1.45970 1.03522 1.82419 1.01972 1.19023 0.89825 1.42839 0.83408 0.90236 1.24829 0.95959 1.02494 0.97202 1.69839 1.04825 1.55940 1.25943 0.86140 0.79114 0.77398 0.83387 1.21678 1.21749 1.20558 1.22493 0.89725 0.96593 0.90795 0.92613 0.92721 0.91264 0.75662 0.77582 0.83971 0.84556 0.84995 0.84501 0.84619 0.89253 0.95421 0.91406 0.93673 0.93780 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.31 37.16 0.35 -1.79 16 2 C 0.15 2.39 2.38 -67.93 -0.16 2.22 16 3 H 0.09 1.60 7.41 -51.93 -0.39 1.22 16 4 N -0.70 -10.48 5.07 -54.85 -0.28 -10.76 16 5 C 0.60 9.26 7.78 -12.48 -0.10 9.16 16 6 O -0.54 -9.37 16.53 5.28 0.09 -9.28 16 7 C -0.09 -1.18 6.99 -83.54 -0.58 -1.76 16 8 C 0.09 0.99 10.60 -16.71 -0.18 0.81 16 9 N -0.31 -3.44 3.82 -10.42 -0.04 -3.48 16 10 C 0.14 1.17 6.70 -83.57 -0.56 0.61 16 11 C -0.10 -0.79 9.68 -39.40 -0.38 -1.17 16 12 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 13 C -0.12 -0.50 10.04 -39.55 -0.40 -0.90 16 14 C -0.10 -0.44 10.04 -39.61 -0.40 -0.84 16 15 C -0.13 -0.79 9.47 -39.41 -0.37 -1.16 16 16 N -0.06 -0.75 13.12 60.35 0.79 0.04 16 17 N -0.19 -2.75 12.03 32.85 0.40 -2.35 16 18 C -0.15 -2.72 3.47 -89.69 -0.31 -3.03 16 19 C 0.17 4.15 6.99 -2.84 -0.02 4.13 16 20 N -0.61 -16.01 3.70 -177.68 -0.66 -16.66 16 21 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.92 -27.96 11.51 55.49 0.64 -27.32 16 25 Si 0.91 22.59 29.56 -169.99 -5.02 17.56 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.13 2.65 7.64 -2.97 -0.02 2.63 16 30 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 33 H 0.41 5.77 8.29 -40.82 -0.34 5.44 16 34 H 0.21 1.56 7.13 -52.49 -0.37 1.18 16 35 H 0.14 1.09 7.73 -52.49 -0.41 0.69 16 36 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 37 H 0.13 0.27 8.06 -52.49 -0.42 -0.16 16 38 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 39 H 0.14 0.62 6.81 -52.49 -0.36 0.26 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 42 H 0.07 1.79 7.37 -51.93 -0.38 1.41 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 385.21 15.07 5.81 5.81 Total: -1.00 -35.24 385.21 -8.05 -43.28 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.97 Total: 2.06 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.79 Total: 1.11 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.85 Total: -60.54 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.24 -8.05 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970025701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.577 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds