Wall clock time and date at job start Wed Apr 1 2020 00:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47110 * 2 1 4 4 N 1.46504 * 109.47123 * 120.00072 * 2 1 3 5 5 C 1.34774 * 119.99857 * 274.99939 * 4 2 1 6 6 O 1.21600 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.47510 * 119.99734 * 179.97438 * 5 4 2 8 8 C 1.36623 * 125.76407 * 180.30974 * 7 5 4 9 9 N 1.35079 * 106.78917 * 180.13691 * 8 7 5 10 10 C 1.40233 * 126.60747 * 179.84898 * 9 8 7 11 11 C 1.38835 * 120.06140 * 179.71361 * 10 9 8 12 12 C 1.38118 * 119.93218 * 179.97438 * 11 10 9 13 13 C 1.38277 * 120.06665 * 359.97438 * 12 11 10 14 14 C 1.38280 * 120.13319 * 359.97438 * 13 12 11 15 15 C 1.38125 * 120.06569 * 0.02562 * 14 13 12 16 16 N 1.40210 * 106.77903 * 359.58883 * 9 8 7 17 17 N 1.28758 * 108.38201 * 0.26333 * 16 9 8 18 18 C 1.53000 * 109.47391 * 240.00246 * 2 1 3 19 19 C 1.53947 * 113.74336 * 158.73939 * 18 2 1 20 20 N 1.47817 * 86.03697 * 222.08496 * 19 18 2 21 21 C 1.36927 * 134.45519 * 204.64850 * 20 19 18 22 22 H 1.08002 * 119.99855 * 173.34775 * 21 20 19 23 23 C 1.38818 * 120.00259 * 353.34322 * 21 20 19 24 24 N 1.31618 * 119.99762 * 5.06646 * 23 21 20 25 25 Si 1.86793 * 120.00031 * 185.06666 * 23 21 20 26 26 H 1.48506 * 109.47233 * 94.98811 * 25 23 21 27 27 H 1.48499 * 109.47180 * 214.98523 * 25 23 21 28 28 H 1.48497 * 109.47469 * 334.98461 * 25 23 21 29 29 C 1.47581 * 91.04910 * 24.54858 * 20 19 18 30 30 H 1.09008 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47380 * 299.99886 * 1 2 3 32 32 H 1.09000 * 109.47162 * 60.00169 * 1 2 3 33 33 H 0.96994 * 119.99793 * 95.00220 * 4 2 1 34 34 H 1.08001 * 126.60743 * 0.02562 * 8 7 5 35 35 H 1.07997 * 120.03279 * 359.95591 * 11 10 9 36 36 H 1.07999 * 119.96716 * 180.02562 * 12 11 10 37 37 H 1.07999 * 119.93558 * 179.72825 * 13 12 11 38 38 H 1.07997 * 119.96821 * 179.97438 * 14 13 12 39 39 H 1.07993 * 120.03636 * 180.02562 * 15 14 13 40 40 H 1.09004 * 112.94411 * 290.33730 * 18 2 1 41 41 H 1.08999 * 113.76926 * 336.35076 * 19 18 2 42 42 H 1.09001 * 113.76677 * 107.74304 * 19 18 2 43 43 H 0.96998 * 119.99898 * 180.02562 * 24 23 21 44 44 H 1.09006 * 113.76717 * 221.15053 * 29 20 19 45 45 H 1.08999 * 113.87278 * 89.76985 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8574 1.1615 2.4118 7 6 2.6382 -0.7138 3.5616 8 6 2.8076 -0.1514 4.7952 9 7 3.2741 -1.1250 5.6071 10 6 3.5941 -0.9981 6.9665 11 6 4.0604 -2.0963 7.6766 12 6 4.3753 -1.9682 9.0153 13 6 4.2272 -0.7477 9.6482 14 6 3.7640 0.3480 8.9433 15 6 3.4474 0.2262 7.6044 16 7 3.3708 -2.2882 4.8303 17 7 2.9888 -2.0095 3.6326 18 6 2.0401 -0.7212 -1.2493 19 6 3.4848 -0.3519 -1.6317 20 7 2.9979 -0.3175 -3.0269 21 6 3.5875 -0.4755 -4.2526 22 1 2.9790 -0.5088 -5.1442 23 6 4.9673 -0.5929 -4.3491 24 7 5.7006 -0.6526 -3.2578 25 14 5.7833 -0.6661 -6.0278 26 1 6.2266 0.6952 -6.4226 27 1 6.9589 -1.5714 -5.9677 28 1 4.8133 -1.1802 -7.0278 29 6 1.6214 -0.0471 -2.5684 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1526 34 1 2.6088 0.8744 5.0681 35 1 4.1764 -3.0497 7.1828 36 1 4.7385 -2.8220 9.5681 37 1 4.4699 -0.6511 10.6961 38 1 3.6489 1.2999 9.4404 39 1 3.0861 1.0824 7.0542 40 1 1.8528 -1.7948 -1.2264 41 1 3.8048 0.6192 -1.2539 42 1 4.2071 -1.1446 -1.4366 43 1 6.6648 -0.7342 -3.3252 44 1 0.8587 -0.5968 -3.1200 45 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970025701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:31 Heat of formation + Delta-G solvation = 125.764619 kcal Electronic energy + Delta-G solvation = -27991.132884 eV Core-core repulsion = 24011.966854 eV Total energy + Delta-G solvation = -3979.166030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59150 -40.94565 -40.20075 -39.53580 -36.24078 -35.74517 -34.17767 -32.73546 -32.07065 -31.53414 -30.56767 -29.33589 -26.71325 -25.84765 -25.40184 -25.15111 -23.62794 -22.64421 -22.35676 -21.42105 -20.79920 -19.68334 -18.74790 -18.03527 -17.49792 -17.33824 -17.02418 -16.88344 -16.33900 -16.07880 -15.79526 -15.72745 -15.51602 -15.05604 -14.81917 -14.66085 -14.50899 -14.18425 -14.04937 -13.52544 -13.42170 -13.27209 -13.07572 -12.88937 -12.86830 -12.69734 -12.54125 -12.45376 -12.34059 -12.08446 -11.99325 -11.72862 -11.53195 -11.30908 -11.11544 -10.87021 -10.71620 -10.09133 -10.06993 -9.58090 -8.90641 -7.91834 -5.24402 -0.65510 0.26886 0.45670 0.72207 0.83188 1.44104 1.46599 1.55541 2.03960 2.17048 2.47322 2.69168 3.01205 3.19960 3.29026 3.40138 3.62717 3.70562 3.80088 3.85485 3.95269 4.00301 4.18503 4.31706 4.32823 4.36756 4.49788 4.50487 4.60009 4.63252 4.76233 4.85333 4.88602 4.96420 5.03506 5.10606 5.22435 5.26208 5.28026 5.36925 5.43982 5.45279 5.45987 5.55515 5.66648 5.88477 5.93187 6.38903 6.72845 6.91061 7.08988 7.60840 8.57721 9.25978 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.002018 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.247460 B =13872.968761 C =14808.535940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 H 0.070 0.930 4 N -0.699 5.699 5 C 0.606 3.394 6 O -0.564 6.564 7 C -0.110 4.110 8 C 0.105 3.895 9 N -0.302 5.302 10 C 0.097 3.903 11 C -0.120 4.120 12 C -0.101 4.101 13 C -0.107 4.107 14 C -0.095 4.095 15 C -0.126 4.126 16 N -0.080 5.080 17 N -0.214 5.214 18 C -0.113 4.113 19 C 0.170 3.830 20 N -0.645 5.645 21 C -0.233 4.233 22 H 0.087 0.913 23 C -0.072 4.072 24 N -0.955 5.955 25 Si 0.979 3.021 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.263 1.263 29 C 0.133 3.867 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.240 0.760 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.101 0.899 41 H 0.007 0.993 42 H 0.033 0.967 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 0.590 30.375 31.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.088 0.912 4 N -0.348 5.348 5 C 0.391 3.609 6 O -0.442 6.442 7 C -0.249 4.249 8 C -0.050 4.050 9 N -0.080 5.080 10 C 0.006 3.994 11 C -0.140 4.140 12 C -0.120 4.120 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.146 4.146 16 N -0.059 5.059 17 N -0.087 5.087 18 C -0.133 4.133 19 C 0.044 3.956 20 N -0.371 5.371 21 C -0.362 4.362 22 H 0.105 0.895 23 C -0.265 4.265 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.216 1.216 27 H -0.222 1.222 28 H -0.187 1.187 29 C 0.008 3.992 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.256 0.744 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.119 0.881 41 H 0.025 0.975 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.857 -0.134 30.077 31.087 hybrid contribution 0.934 0.477 -1.164 1.566 sum -6.923 0.342 28.914 29.733 Atomic orbital electron populations 1.22060 0.92830 1.03111 1.02751 1.20968 0.95423 0.96010 0.82128 0.91167 1.45864 1.65368 1.14760 1.08797 1.16806 0.76926 0.85298 0.81909 1.90777 1.52721 1.15559 1.85182 1.21496 1.15363 0.91544 0.96477 1.23817 0.94699 0.97715 0.88764 1.47795 1.42261 1.08593 1.09331 1.18065 1.05471 0.97723 0.78110 1.21124 0.99495 0.97618 0.95771 1.21441 0.98164 0.99733 0.92612 1.21811 0.96693 0.91989 1.01994 1.21476 0.96730 1.00952 0.92207 1.21306 1.01637 0.94924 0.96768 1.82001 1.22909 1.04938 0.96014 1.74642 1.08386 1.13740 1.11919 1.23479 0.96315 1.00518 0.92940 1.22109 0.93817 0.96341 0.83292 1.46396 1.06148 1.82743 1.01843 1.19476 0.90366 1.41498 0.84847 0.89484 1.25717 0.96766 1.03142 1.00873 1.70044 1.04498 1.57767 1.28104 0.85050 0.77925 0.77036 0.79308 1.21629 1.22232 1.18743 1.22683 0.87575 0.97729 0.91217 0.91108 0.92607 0.90170 0.75216 0.74422 0.85207 0.82484 0.81993 0.81607 0.83063 0.88088 0.97508 0.94871 0.94407 0.91582 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.31 71.98 0.67 -3.05 16 2 C 0.16 4.98 2.38 44.99 0.11 5.09 16 3 H 0.07 2.51 7.41 -2.39 -0.02 2.50 16 4 N -0.70 -21.17 5.07 -445.72 -2.26 -23.43 16 5 C 0.61 18.82 7.78 86.69 0.67 19.50 16 6 O -0.56 -19.52 16.53 -4.03 -0.07 -19.58 16 7 C -0.11 -3.06 6.99 40.82 0.29 -2.77 16 8 C 0.10 2.24 10.60 83.82 0.89 3.13 16 9 N -0.30 -6.64 3.82 -186.87 -0.71 -7.36 16 10 C 0.10 1.61 6.70 38.08 0.25 1.86 16 11 C -0.12 -1.78 9.68 22.38 0.22 -1.56 16 12 C -0.10 -0.86 10.04 22.25 0.22 -0.64 16 13 C -0.11 -0.57 10.04 22.29 0.22 -0.35 16 14 C -0.10 -0.57 10.04 22.25 0.22 -0.35 16 15 C -0.13 -1.32 9.47 22.38 0.21 -1.11 16 16 N -0.08 -2.22 13.12 37.02 0.49 -1.74 16 17 N -0.21 -6.39 12.03 -49.98 -0.60 -6.99 16 18 C -0.11 -4.11 3.47 -10.13 -0.04 -4.14 16 19 C 0.17 8.44 6.99 86.44 0.60 9.04 16 20 N -0.64 -34.02 3.70 -716.05 -2.65 -36.67 16 21 C -0.23 -13.47 10.70 84.04 0.90 -12.58 16 22 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 23 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 24 N -0.96 -60.24 11.51 21.65 0.25 -59.99 16 25 Si 0.98 47.15 29.56 68.60 2.03 49.18 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 29 C 0.13 5.24 7.64 86.49 0.66 5.90 16 30 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.83 7.52 -2.39 -0.02 1.81 16 33 H 0.41 11.89 8.29 -92.71 -0.77 11.12 16 34 H 0.24 3.21 7.13 -2.91 -0.02 3.19 16 35 H 0.13 2.14 7.73 -2.91 -0.02 2.12 16 36 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.16 -0.08 8.06 -2.91 -0.02 -0.11 16 38 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.15 1.00 6.81 -2.91 -0.02 0.98 16 40 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 41 H 0.01 0.38 7.99 -2.39 -0.02 0.36 16 42 H 0.03 1.85 7.37 -2.39 -0.02 1.83 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 Total: -1.00 -79.49 385.21 3.30 -76.19 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.26 Total: 16.22 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 6.58 Total: 14.17 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -5.49 Total: -136.17 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.07 Total: -19.58 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -79.49 3.30 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970025701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.952 kcal (2) G-P(sol) polarization free energy of solvation -79.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds