Wall clock time and date at job start Wed Apr 1 2020 00:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21601 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.47509 * 119.99784 * 180.02562 * 5 4 2 8 8 C 1.36623 * 125.76466 * 179.71590 * 7 5 4 9 9 N 1.35080 * 106.79204 * 179.89620 * 8 7 5 10 10 C 1.40228 * 126.61079 * 180.15050 * 9 8 7 11 11 C 1.38830 * 120.06533 * 0.02562 * 10 9 8 12 12 C 1.38122 * 119.92916 * 179.72207 * 11 10 9 13 13 C 1.38281 * 120.06818 * 0.55444 * 12 11 10 14 14 C 1.38277 * 120.12887 * 359.72390 * 13 12 11 15 15 C 1.38125 * 120.06827 * 359.97438 * 14 13 12 16 16 N 1.40206 * 106.77353 * 0.36533 * 9 8 7 17 17 N 1.28755 * 108.38861 * 359.76461 * 16 9 8 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 32 32 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.08003 * 126.60194 * 0.04926 * 8 7 5 35 35 H 1.07994 * 120.03343 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.96512 * 180.28092 * 12 11 10 37 37 H 1.07998 * 119.93385 * 179.74719 * 13 12 11 38 38 H 1.08001 * 119.96781 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.02815 * 180.02562 * 15 14 13 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1616 -2.4116 7 6 2.6383 -0.7139 -3.5616 8 6 2.8081 -0.1514 -4.7950 9 7 3.2738 -1.1251 -5.6072 10 6 3.5939 -0.9984 -6.9666 11 6 3.4409 0.2244 -7.6061 12 6 3.7625 0.3475 -8.9437 13 6 4.2255 -0.7483 -9.6486 14 6 4.3734 -1.9688 -9.0158 15 6 4.0594 -2.0966 -7.6768 16 7 3.3707 -2.2882 -4.8302 17 7 2.9889 -2.0095 -3.6326 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.6106 0.8748 -5.0675 35 1 3.0747 1.0793 -7.0572 36 1 3.6480 1.2996 -9.4406 37 1 4.4724 -0.6506 -10.6955 38 1 4.7357 -2.8229 -9.5688 39 1 4.1755 -3.0501 -7.1831 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970025702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:34 Heat of formation + Delta-G solvation = 157.741548 kcal Electronic energy + Delta-G solvation = -28122.546376 eV Core-core repulsion = 24144.766969 eV Total energy + Delta-G solvation = -3977.779407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79388 -40.01216 -39.62408 -38.44557 -35.19978 -34.96512 -32.43051 -32.04068 -31.38461 -30.79142 -29.85111 -27.71529 -25.55657 -24.91393 -24.56024 -23.72501 -22.68681 -21.93093 -21.00392 -20.44184 -19.65772 -18.87485 -17.45256 -17.32188 -16.61364 -16.54349 -16.31177 -15.73228 -15.44553 -15.24736 -14.85081 -14.65405 -14.44914 -14.15898 -13.87245 -13.72721 -13.58271 -13.12291 -12.95965 -12.74610 -12.40761 -12.28906 -11.87590 -11.84836 -11.79956 -11.68372 -11.63222 -11.47171 -10.90808 -10.63053 -10.32806 -10.31290 -10.05541 -9.90007 -9.73399 -9.24977 -9.09785 -9.07328 -8.88399 -8.86036 -7.12416 -6.25788 -3.19622 -0.06337 0.61912 1.25071 1.43633 1.50106 3.03998 3.05918 3.16360 3.45857 3.48985 3.68733 3.79598 3.86931 4.13959 4.34127 4.37137 4.51620 4.60471 4.63535 4.65100 4.74010 4.86105 4.93718 4.95115 5.12383 5.27289 5.34905 5.46704 5.51892 5.60589 5.61404 5.69570 5.78941 5.79506 5.89903 5.90562 6.03572 6.17999 6.27241 6.30344 6.30940 6.34285 6.42671 6.58599 6.95450 7.16200 7.36897 7.62801 8.12427 8.27090 9.01225 9.53748 10.40639 11.24163 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002207 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.605558 B =12684.408555 C =13619.047040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 H 0.093 0.907 4 N -0.702 5.702 5 C 0.604 3.396 6 O -0.539 6.539 7 C -0.089 4.089 8 C 0.092 3.908 9 N -0.313 5.313 10 C 0.134 3.866 11 C -0.125 4.125 12 C -0.096 4.096 13 C -0.115 4.115 14 C -0.098 4.098 15 C -0.104 4.104 16 N -0.055 5.055 17 N -0.193 5.193 18 C -0.140 4.140 19 C 0.135 3.865 20 N -0.629 5.629 21 C -0.303 4.303 22 H 0.083 0.917 23 C -0.025 4.025 24 N -0.935 5.935 25 Si 1.069 2.931 26 H -0.296 1.296 27 H -0.292 1.292 28 H -0.287 1.287 29 C 0.102 3.898 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.408 0.592 34 H 0.208 0.792 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.260 0.740 44 H 0.045 0.955 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 0.452 -34.403 35.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.111 0.889 4 N -0.352 5.352 5 C 0.388 3.612 6 O -0.415 6.415 7 C -0.227 4.227 8 C -0.061 4.061 9 N -0.091 5.091 10 C 0.042 3.958 11 C -0.146 4.146 12 C -0.114 4.114 13 C -0.134 4.134 14 C -0.117 4.117 15 C -0.124 4.124 16 N -0.034 5.034 17 N -0.067 5.067 18 C -0.160 4.160 19 C 0.008 3.992 20 N -0.357 5.357 21 C -0.429 4.429 22 H 0.101 0.899 23 C -0.224 4.224 24 N -0.577 5.577 25 Si 0.902 3.098 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.214 1.214 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.225 0.775 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.039 -0.328 -34.547 34.914 hybrid contribution -1.690 0.736 0.459 1.900 sum -6.729 0.408 -34.088 34.748 Atomic orbital electron populations 1.22127 0.94966 1.02176 1.02412 1.21101 0.94081 0.97482 0.82590 0.88933 1.45926 1.65615 1.14653 1.09007 1.16668 0.77466 0.85591 0.81519 1.90813 1.51352 1.14668 1.84674 1.21580 1.13691 0.91346 0.96069 1.23377 0.96250 0.96749 0.89758 1.47655 1.43575 1.09354 1.08543 1.17647 1.02904 0.96171 0.79029 1.20999 1.02151 0.95499 0.95909 1.21066 0.97841 0.99576 0.92933 1.21385 0.98597 0.92725 1.00658 1.21152 0.98631 0.98323 0.93546 1.21017 0.98710 0.98095 0.94590 1.82087 1.21797 1.03581 0.95923 1.74682 1.07654 1.13077 1.11284 1.23577 0.99053 1.00454 0.92933 1.22256 0.90060 0.97136 0.89760 1.45959 1.04083 1.83728 1.01915 1.20152 0.92124 1.47537 0.83055 0.89941 1.25709 0.94250 0.99306 1.03140 1.70914 1.37276 1.52342 0.97168 0.83727 0.75687 0.76303 0.74084 1.22291 1.22053 1.21415 1.22841 0.94835 0.98505 0.86145 0.92416 0.91085 0.92463 0.75612 0.77535 0.84622 0.84457 0.84941 0.84510 0.83969 0.88218 0.93473 0.94268 0.92977 0.93723 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.29 37.16 0.35 -1.61 16 2 C 0.15 2.19 2.47 -67.93 -0.17 2.02 16 3 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 4 N -0.70 -9.54 5.07 -54.85 -0.28 -9.82 16 5 C 0.60 8.48 7.78 -12.48 -0.10 8.38 16 6 O -0.54 -8.61 16.53 5.28 0.09 -8.52 16 7 C -0.09 -1.11 6.99 -83.54 -0.58 -1.70 16 8 C 0.09 0.91 10.60 -16.71 -0.18 0.73 16 9 N -0.31 -3.15 3.82 -10.42 -0.04 -3.19 16 10 C 0.13 1.05 6.70 -83.58 -0.56 0.49 16 11 C -0.12 -0.70 9.47 -39.40 -0.37 -1.07 16 12 C -0.10 -0.39 10.04 -39.61 -0.40 -0.78 16 13 C -0.12 -0.44 10.04 -39.55 -0.40 -0.83 16 14 C -0.10 -0.45 10.04 -39.61 -0.40 -0.85 16 15 C -0.10 -0.71 9.68 -39.41 -0.38 -1.10 16 16 N -0.06 -0.68 13.12 60.35 0.79 0.11 16 17 N -0.19 -2.56 12.03 32.85 0.40 -2.17 16 18 C -0.14 -2.37 3.67 -89.96 -0.33 -2.70 16 19 C 0.13 2.62 7.33 -8.50 -0.06 2.55 16 20 N -0.63 -15.74 3.69 -184.57 -0.68 -16.42 16 21 C -0.30 -8.91 11.08 -15.06 -0.17 -9.08 16 22 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 23 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 24 N -0.93 -30.12 13.70 55.49 0.76 -29.36 16 25 Si 1.07 27.76 25.16 -169.99 -4.28 23.48 16 26 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 27 H -0.29 -7.19 6.51 56.52 0.37 -6.82 16 28 H -0.29 -7.04 6.21 56.52 0.35 -6.69 16 29 C 0.10 2.20 5.27 -8.36 -0.04 2.16 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 5.14 8.29 -40.82 -0.34 4.81 16 34 H 0.21 1.36 7.13 -52.48 -0.37 0.99 16 35 H 0.14 0.52 6.81 -52.49 -0.36 0.16 16 36 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 37 H 0.13 0.20 8.06 -52.49 -0.42 -0.22 16 38 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.14 1.00 7.73 -52.49 -0.41 0.59 16 40 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 44 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 45 H 0.05 1.17 4.73 -51.93 -0.25 0.92 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -36.38 377.47 -7.36 -43.74 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.92 Total: 0.71 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.89 Total: -4.25 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.95 Total: -60.85 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 27.76 SS G_CDS: -4.28 Total: 23.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.38 -7.36 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970025702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.479 kcal (2) G-P(sol) polarization free energy of solvation -36.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds