Wall clock time and date at job start Wed Apr 1 2020 00:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21601 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.47509 * 119.99784 * 180.02562 * 5 4 2 8 8 C 1.36623 * 125.76466 * 179.71590 * 7 5 4 9 9 N 1.35080 * 106.79204 * 179.89620 * 8 7 5 10 10 C 1.40228 * 126.61079 * 180.15050 * 9 8 7 11 11 C 1.38830 * 120.06533 * 0.02562 * 10 9 8 12 12 C 1.38122 * 119.92916 * 179.72207 * 11 10 9 13 13 C 1.38281 * 120.06818 * 0.55444 * 12 11 10 14 14 C 1.38277 * 120.12887 * 359.72390 * 13 12 11 15 15 C 1.38125 * 120.06827 * 359.97438 * 14 13 12 16 16 N 1.40206 * 106.77353 * 0.36533 * 9 8 7 17 17 N 1.28755 * 108.38861 * 359.76461 * 16 9 8 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47021 * 299.99820 * 1 2 3 32 32 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.08003 * 126.60194 * 0.04926 * 8 7 5 35 35 H 1.07994 * 120.03343 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.96512 * 180.28092 * 12 11 10 37 37 H 1.07998 * 119.93385 * 179.74719 * 13 12 11 38 38 H 1.08001 * 119.96781 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.02815 * 180.02562 * 15 14 13 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1616 -2.4116 7 6 2.6383 -0.7139 -3.5616 8 6 2.8081 -0.1514 -4.7950 9 7 3.2738 -1.1251 -5.6072 10 6 3.5939 -0.9984 -6.9666 11 6 3.4409 0.2244 -7.6061 12 6 3.7625 0.3475 -8.9437 13 6 4.2255 -0.7483 -9.6486 14 6 4.3734 -1.9688 -9.0158 15 6 4.0594 -2.0966 -7.6768 16 7 3.3707 -2.2882 -4.8302 17 7 2.9889 -2.0095 -3.6326 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.6106 0.8748 -5.0675 35 1 3.0747 1.0793 -7.0572 36 1 3.6480 1.2996 -9.4406 37 1 4.4724 -0.6506 -10.6955 38 1 4.7357 -2.8229 -9.5688 39 1 4.1755 -3.0501 -7.1831 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970025702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:33 Heat of formation + Delta-G solvation = 131.774284 kcal Electronic energy + Delta-G solvation = -28123.672401 eV Core-core repulsion = 24144.766969 eV Total energy + Delta-G solvation = -3978.905432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59536 -41.11502 -40.27037 -39.82466 -36.36301 -35.75782 -34.53020 -32.78456 -32.15010 -31.60116 -30.61831 -29.47317 -27.10058 -25.88929 -25.34552 -24.97699 -23.55430 -22.60756 -22.31485 -21.47337 -20.98522 -19.79011 -19.53986 -18.11779 -17.62321 -17.35715 -17.17211 -16.94113 -16.32621 -16.13184 -16.00549 -15.70401 -15.61789 -15.16570 -15.07217 -14.87658 -14.51038 -14.39858 -14.12215 -13.66250 -13.52191 -13.28703 -13.22837 -13.12944 -12.87283 -12.53063 -12.45970 -12.37296 -12.34175 -12.13496 -12.08203 -11.71153 -11.38124 -11.19417 -11.09788 -10.85579 -10.71779 -10.11065 -10.09246 -9.58478 -9.23122 -8.62284 -5.48204 -0.65519 0.26726 0.44927 0.72153 0.82682 1.36122 1.44651 1.63587 2.00892 2.14852 2.50705 2.68981 2.97912 3.00633 3.16688 3.19758 3.47827 3.64072 3.73550 3.84730 3.86313 4.00345 4.18308 4.21079 4.31797 4.35895 4.39351 4.46060 4.50366 4.58746 4.61797 4.66976 4.69737 4.81863 4.88258 4.96175 5.04242 5.19410 5.22024 5.27831 5.32038 5.39674 5.44248 5.45892 5.52765 5.88144 5.94313 6.36653 6.69214 6.72169 7.07105 7.31666 8.27055 8.89350 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002207 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.605558 B =12684.408555 C =13619.047040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.081 0.919 4 N -0.701 5.701 5 C 0.608 3.392 6 O -0.561 6.561 7 C -0.110 4.110 8 C 0.105 3.895 9 N -0.302 5.302 10 C 0.097 3.903 11 C -0.125 4.125 12 C -0.096 4.096 13 C -0.107 4.107 14 C -0.102 4.102 15 C -0.120 4.120 16 N -0.080 5.080 17 N -0.213 5.213 18 C -0.107 4.107 19 C 0.133 3.867 20 N -0.662 5.662 21 C -0.287 4.287 22 H 0.054 0.946 23 C -0.086 4.086 24 N -0.971 5.971 25 Si 1.107 2.893 26 H -0.304 1.304 27 H -0.273 1.273 28 H -0.267 1.267 29 C 0.092 3.908 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.414 0.586 34 H 0.239 0.761 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.247 0.753 44 H 0.048 0.952 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 1.356 -38.750 39.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 H 0.099 0.901 4 N -0.351 5.351 5 C 0.393 3.607 6 O -0.439 6.439 7 C -0.249 4.249 8 C -0.050 4.050 9 N -0.080 5.080 10 C 0.007 3.993 11 C -0.146 4.146 12 C -0.114 4.114 13 C -0.125 4.125 14 C -0.120 4.120 15 C -0.140 4.140 16 N -0.059 5.059 17 N -0.086 5.086 18 C -0.126 4.126 19 C 0.008 3.992 20 N -0.391 5.391 21 C -0.415 4.415 22 H 0.072 0.928 23 C -0.278 4.278 24 N -0.617 5.617 25 Si 0.934 3.066 26 H -0.232 1.232 27 H -0.199 1.199 28 H -0.192 1.192 29 C -0.033 4.033 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.255 0.745 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.148 0.852 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.916 0.549 -38.953 39.403 hybrid contribution -1.513 0.494 1.638 2.284 sum -7.429 1.043 -37.315 38.061 Atomic orbital electron populations 1.22069 0.92948 1.03166 1.02817 1.20910 0.95467 0.96316 0.81705 0.90122 1.45868 1.65616 1.14868 1.08747 1.16767 0.76873 0.85279 0.81817 1.90794 1.52470 1.15531 1.85101 1.21488 1.15445 0.91517 0.96478 1.23835 0.94617 0.97728 0.88796 1.47786 1.42262 1.08618 1.09301 1.18041 1.05454 0.97681 0.78160 1.21302 1.01561 0.94996 0.96707 1.21475 0.96740 1.00901 0.92299 1.21808 0.96730 0.92033 1.01966 1.21441 0.98189 0.99703 0.92678 1.21120 0.99502 0.97628 0.95715 1.82017 1.22913 1.04919 0.96027 1.74637 1.08394 1.13666 1.11934 1.23271 0.95213 1.01150 0.93005 1.22482 0.87848 0.98389 0.90509 1.46098 1.07080 1.84206 1.01710 1.20047 0.91930 1.45133 0.84406 0.92795 1.26951 0.96222 0.99915 1.04703 1.71005 1.37387 1.55671 0.97609 0.83266 0.73582 0.77955 0.71811 1.23247 1.19922 1.19220 1.23042 0.97254 0.98605 0.84394 0.91161 0.90348 0.92402 0.75005 0.74454 0.82982 0.81665 0.82107 0.82562 0.85163 0.86953 0.92437 0.92658 0.94401 0.93466 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.29 71.98 0.67 -2.64 16 2 C 0.16 4.25 2.47 44.99 0.11 4.36 16 3 H 0.08 2.39 7.32 -2.39 -0.02 2.37 16 4 N -0.70 -17.81 5.07 -445.72 -2.26 -20.07 16 5 C 0.61 16.20 7.78 86.69 0.67 16.88 16 6 O -0.56 -17.02 16.53 -4.04 -0.07 -17.09 16 7 C -0.11 -2.66 6.99 40.82 0.29 -2.37 16 8 C 0.10 1.92 10.60 83.82 0.89 2.81 16 9 N -0.30 -5.84 3.82 -186.88 -0.71 -6.55 16 10 C 0.10 1.41 6.70 38.08 0.25 1.66 16 11 C -0.13 -1.07 9.47 22.38 0.21 -0.86 16 12 C -0.10 -0.43 10.04 22.25 0.22 -0.21 16 13 C -0.11 -0.44 10.04 22.29 0.22 -0.21 16 14 C -0.10 -0.72 10.04 22.25 0.22 -0.50 16 15 C -0.12 -1.55 9.68 22.38 0.22 -1.34 16 16 N -0.08 -1.99 13.12 37.02 0.49 -1.50 16 17 N -0.21 -5.61 12.03 -49.98 -0.60 -6.21 16 18 C -0.11 -3.35 3.67 -10.37 -0.04 -3.39 16 19 C 0.13 4.90 7.33 83.18 0.61 5.51 16 20 N -0.66 -32.62 3.69 -737.86 -2.72 -35.34 16 21 C -0.29 -17.20 11.08 84.03 0.93 -16.27 16 22 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 23 C -0.09 -5.33 5.50 84.86 0.47 -4.87 16 24 N -0.97 -64.58 13.70 21.65 0.30 -64.29 16 25 Si 1.11 56.32 25.16 68.60 1.73 58.05 16 26 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 27 H -0.27 -12.82 6.51 99.48 0.65 -12.17 16 28 H -0.27 -12.49 6.21 99.48 0.62 -11.88 16 29 C 0.09 3.80 5.27 83.27 0.44 4.23 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.60 7.48 -2.39 -0.02 1.58 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.41 9.75 8.29 -92.71 -0.77 8.98 16 34 H 0.24 2.51 7.13 -2.91 -0.02 2.49 16 35 H 0.15 0.69 6.81 -2.91 -0.02 0.67 16 36 H 0.17 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.16 -0.25 8.06 -2.91 -0.02 -0.27 16 38 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 39 H 0.13 1.90 7.73 -2.91 -0.02 1.88 16 40 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 43 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 44 H 0.05 1.96 7.44 -2.39 -0.02 1.94 16 45 H 0.04 1.92 4.73 -2.39 -0.01 1.91 16 Total: -1.00 -81.43 377.47 2.61 -78.82 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.08 Total: 11.39 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.39 Total: 2.79 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -5.52 Total: -133.96 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.07 Total: -17.09 kcal Atomic # 14 Polarization: 56.32 SS G_CDS: 1.73 Total: 58.05 kcal Total: -81.43 2.61 -78.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970025702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.598 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds