Wall clock time and date at job start Wed Apr 1 2020 00:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46912 * 2 1 4 4 N 1.46495 * 109.47327 * 240.00178 * 2 1 3 5 5 C 1.34778 * 120.00089 * 84.99489 * 4 2 1 6 6 O 1.21613 * 120.00131 * 0.02562 * 5 4 2 7 7 C 1.47319 * 119.99947 * 179.97438 * 5 4 2 8 8 C 1.37918 * 126.80762 * 0.18074 * 7 5 4 9 9 N 1.34187 * 107.89531 * 180.27939 * 8 7 5 10 10 H 0.96995 * 125.17071 * 179.72233 * 9 8 7 11 11 N 1.39782 * 109.66677 * 359.71418 * 9 8 7 12 12 C 1.31374 * 109.06685 * 0.02562 * 11 9 8 13 13 C 1.48272 * 126.50913 * 180.02562 * 12 11 9 14 14 C 1.39809 * 120.91059 * 144.99596 * 13 12 11 15 15 C 1.37969 * 119.01572 * 180.02562 * 14 13 12 16 16 N 1.31928 * 120.88018 * 359.97438 * 15 14 13 17 17 C 1.31925 * 122.02465 * 0.02562 * 16 15 14 18 18 C 1.37977 * 120.88036 * 0.02562 * 17 16 15 19 19 C 1.52998 * 109.47129 * 119.99856 * 2 1 3 20 20 C 1.53949 * 113.74319 * 281.82509 * 19 2 1 21 21 N 1.47810 * 86.03602 * 222.08660 * 20 19 2 22 22 C 1.36941 * 134.45536 * 204.64617 * 21 20 19 23 23 H 1.07997 * 119.99964 * 179.86681 * 22 21 20 24 24 C 1.38813 * 119.99861 * 359.86394 * 22 21 20 25 25 N 1.31612 * 119.99920 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99690 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47319 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47395 * 120.00330 * 26 24 22 29 29 H 1.48500 * 109.46832 * 239.99671 * 26 24 22 30 30 C 1.47579 * 91.05637 * 24.55047 * 21 20 19 31 31 H 1.08996 * 109.47319 * 300.06769 * 1 2 3 32 32 H 1.08997 * 109.47093 * 60.06817 * 1 2 3 33 33 H 1.09004 * 109.47111 * 180.02562 * 1 2 3 34 34 H 0.96996 * 119.99880 * 264.99468 * 4 2 1 35 35 H 1.08002 * 126.05305 * 359.96944 * 8 7 5 36 36 H 1.07994 * 120.49110 * 359.97438 * 14 13 12 37 37 H 1.08000 * 119.55704 * 180.28066 * 15 14 13 38 38 H 1.07992 * 119.56406 * 180.02562 * 17 16 15 39 39 H 1.07998 * 120.49053 * 180.02562 * 18 17 16 40 40 H 1.09001 * 112.94779 * 53.41871 * 19 2 1 41 41 H 1.09002 * 113.76831 * 336.34903 * 20 19 2 42 42 H 1.09000 * 113.76803 * 107.74656 * 20 19 2 43 43 H 0.97003 * 120.00022 * 179.97438 * 25 24 22 44 44 H 1.09002 * 113.77363 * 221.15632 * 30 21 20 45 45 H 1.08997 * 113.87297 * 89.76153 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 8 1.8581 1.1619 -2.4117 7 6 2.6387 -0.7125 -3.5598 8 6 3.0022 -2.0393 -3.6574 9 7 3.3971 -2.2669 -4.9195 10 1 3.7094 -3.1189 -5.2621 11 7 3.2899 -1.0897 -5.6655 12 6 2.8354 -0.1307 -4.8910 13 6 2.5755 1.2743 -5.2869 14 6 1.5091 1.9905 -4.7350 15 6 1.3028 3.2957 -5.1319 16 7 2.0956 3.8673 -6.0180 17 6 3.1124 3.2271 -6.5628 18 6 3.3896 1.9188 -6.2232 19 6 2.0400 -0.7212 1.2492 20 6 1.9743 0.1330 2.5283 21 7 3.3098 -0.4177 2.8417 22 6 4.0194 -0.6143 3.9963 23 1 5.0066 -1.0502 3.9558 24 6 3.4697 -0.2531 5.2187 25 7 2.2664 0.2778 5.2680 26 14 4.4380 -0.5205 6.7936 27 1 5.7534 -1.1283 6.4688 28 1 4.6487 0.7832 7.4727 29 1 3.6813 -1.4296 7.6915 30 6 3.5702 -0.6728 1.4116 31 1 -0.3634 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6316 -1.1526 35 1 2.9785 -2.7653 -2.8581 36 1 0.8560 1.5286 -4.0095 37 1 0.4844 3.8584 -4.7078 38 1 3.7363 3.7338 -7.2841 39 1 4.2239 1.4010 -6.6727 40 1 1.6177 -1.7193 1.3659 41 1 1.9750 1.2066 2.3401 42 1 1.1953 -0.1777 3.2245 43 1 1.8822 0.5299 6.1223 44 1 4.0629 -1.6256 1.2178 45 1 4.0407 0.1625 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970048562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:13 Heat of formation + Delta-G solvation = 132.113006 kcal Electronic energy + Delta-G solvation = -28787.483451 eV Core-core repulsion = 24808.592707 eV Total energy + Delta-G solvation = -3978.890744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.56699 -39.88240 -39.48260 -37.93306 -34.88618 -33.78558 -32.29259 -31.44961 -31.22390 -30.79142 -29.56681 -27.49033 -24.94720 -24.51930 -24.19097 -23.63775 -23.07875 -21.33825 -20.58244 -20.08382 -19.36926 -18.44848 -16.83596 -16.82264 -16.53373 -16.21224 -15.88109 -15.81255 -15.26975 -14.82449 -14.49873 -14.29575 -14.01578 -13.99227 -13.81279 -13.66168 -13.51313 -13.10852 -12.96018 -12.33667 -12.08555 -11.84889 -11.62825 -11.43488 -11.33595 -11.24054 -10.91231 -10.74870 -10.67757 -10.34918 -10.12782 -9.83113 -9.75453 -9.52483 -9.45041 -9.41645 -9.14311 -8.97220 -8.82292 -8.76049 -6.88744 -5.78351 -3.10351 0.70278 1.15027 1.17709 2.06252 2.25422 3.25032 3.36791 3.37461 3.42727 3.45358 3.79449 3.90592 4.20454 4.41990 4.43695 4.65527 4.85767 4.95799 4.99473 5.07367 5.12722 5.16282 5.22941 5.38733 5.53027 5.55686 5.63513 5.64973 5.79671 5.81399 5.98506 6.05171 6.06839 6.20497 6.27980 6.33763 6.43391 6.57705 6.61323 6.64382 6.65641 6.80457 7.04576 7.21427 7.34962 7.54784 7.64738 7.91343 7.96923 8.34776 9.03400 9.69629 10.58653 11.38932 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002393 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.653440 B =11698.438224 C =12350.633819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.089 0.911 4 N -0.714 5.714 5 C 0.589 3.411 6 O -0.536 6.536 7 C -0.272 4.272 8 C 0.109 3.891 9 N -0.462 5.462 10 H 0.445 0.555 11 N -0.277 5.277 12 C 0.166 3.834 13 C 0.015 3.985 14 C -0.101 4.101 15 C 0.090 3.910 16 N -0.480 5.480 17 C 0.085 3.915 18 C -0.143 4.143 19 C -0.147 4.147 20 C 0.176 3.824 21 N -0.613 5.613 22 C -0.223 4.223 23 H 0.079 0.921 24 C -0.008 4.008 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.290 1.290 30 C 0.126 3.874 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.394 0.606 35 H 0.192 0.808 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.039 0.961 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -5.355 -23.397 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.107 0.893 4 N -0.364 5.364 5 C 0.376 3.624 6 O -0.415 6.415 7 C -0.287 4.287 8 C -0.041 4.041 9 N -0.168 5.168 10 H 0.290 0.710 11 N -0.098 5.098 12 C -0.003 4.003 13 C 0.005 3.995 14 C -0.122 4.122 15 C -0.067 4.067 16 N -0.189 5.189 17 C -0.072 4.072 18 C -0.164 4.164 19 C -0.167 4.167 20 C 0.050 3.950 21 N -0.339 5.339 22 C -0.350 4.350 23 H 0.097 0.903 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.217 1.217 30 C -0.001 4.001 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.227 0.773 35 H 0.208 0.792 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.899 -3.966 -24.451 24.843 hybrid contribution 0.937 -1.872 1.935 2.851 sum -0.961 -5.837 -22.515 23.280 Atomic orbital electron populations 1.22107 0.95399 1.01719 1.02334 1.21118 0.93757 0.97553 0.82769 0.89263 1.45974 1.67106 1.13680 1.09606 1.17114 0.77205 0.86211 0.81844 1.90745 1.51196 1.15175 1.84354 1.21406 1.18551 0.93354 0.95394 1.23100 0.95155 0.97077 0.88754 1.45958 1.51918 1.11491 1.07412 0.70991 1.77349 1.23076 0.91314 1.18093 1.21670 0.95871 0.92649 0.90063 1.17954 0.96088 0.89008 0.96460 1.22606 0.97163 0.95363 0.97096 1.22707 0.97939 0.92443 0.93561 1.67585 1.04265 1.38424 1.08614 1.22582 0.94752 0.91467 0.98425 1.22163 1.00293 0.96396 0.97597 1.23854 0.97503 1.00709 0.94614 1.22229 0.89582 0.93925 0.89280 1.46002 1.16365 1.71877 0.99632 1.19058 0.98442 1.34724 0.82823 0.90315 1.24779 0.97076 1.01134 0.97492 1.69812 1.15328 1.47339 1.24289 0.86065 0.78931 0.77377 0.83495 1.20526 1.21715 1.21705 1.22530 0.93085 0.97588 0.86857 0.91102 0.92718 0.92870 0.77277 0.79152 0.82599 0.82441 0.82723 0.84765 0.89410 0.95368 0.90713 0.93663 0.94322 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.44 37.16 0.35 -1.67 16 2 C 0.15 2.16 2.29 -67.93 -0.16 2.00 16 3 H 0.09 1.50 7.48 -51.93 -0.39 1.11 16 4 N -0.71 -8.17 4.94 -54.92 -0.27 -8.44 16 5 C 0.59 7.53 7.68 -12.57 -0.10 7.43 16 6 O -0.54 -8.39 12.15 5.27 0.06 -8.32 16 7 C -0.27 -2.93 6.28 -102.95 -0.65 -3.58 16 8 C 0.11 0.74 11.50 -16.64 -0.19 0.55 16 9 N -0.46 -3.10 7.20 30.81 0.22 -2.88 16 10 H 0.45 1.32 8.96 -182.84 -1.64 -0.32 16 11 N -0.28 -2.91 12.65 34.57 0.44 -2.48 16 12 C 0.17 1.97 6.98 -80.56 -0.56 1.41 16 13 C 0.02 0.19 5.75 -104.60 -0.60 -0.41 16 14 C -0.10 -1.27 7.89 -39.09 -0.31 -1.58 16 15 C 0.09 1.08 11.17 -17.61 -0.20 0.88 16 16 N -0.48 -6.03 10.35 -13.35 -0.14 -6.17 16 17 C 0.08 0.91 11.17 -17.61 -0.20 0.71 16 18 C -0.14 -1.57 9.88 -39.09 -0.39 -1.95 16 19 C -0.15 -2.46 3.35 -89.69 -0.30 -2.76 16 20 C 0.18 3.95 6.98 -2.84 -0.02 3.93 16 21 N -0.61 -15.38 3.70 -177.69 -0.66 -16.03 16 22 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 23 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.92 -26.99 11.39 55.49 0.63 -26.36 16 26 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 C 0.13 2.43 8.38 -2.96 -0.02 2.41 16 31 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.39 3.39 7.56 -40.82 -0.31 3.08 16 35 H 0.19 0.51 7.48 -52.49 -0.39 0.12 16 36 H 0.16 2.02 5.77 -52.49 -0.30 1.71 16 37 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 42 H 0.07 1.86 7.16 -51.93 -0.37 1.48 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -35.82 379.71 -9.77 -45.59 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.17 Total: 1.72 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -3.59 Total: 0.68 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.22 Total: -62.36 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.06 Total: -8.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.82 -9.77 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970048562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.706 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds